Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21289 * 120.00098 * 2 1 4 4 N 1.34775 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.00127 * 174.83144 * 4 2 1 6 6 C 1.38949 * 120.03491 * 326.36386 * 5 4 2 7 7 C 1.38130 * 120.06584 * 180.02562 * 6 5 4 8 8 C 1.38185 * 120.14650 * 359.95457 * 7 6 5 9 9 C 1.38903 * 120.06349 * 359.97438 * 8 7 6 10 10 N 1.39928 * 120.03011 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00063 * 146.77937 * 10 9 8 12 12 O 1.21288 * 119.99685 * 354.77147 * 11 10 9 13 13 C 1.50696 * 120.00139 * 174.78243 * 11 10 9 14 14 C 1.50706 * 109.46858 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00110 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99455 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99633 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47454 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47279 * 119.99876 * 18 16 14 21 21 H 1.48497 * 109.47478 * 239.99827 * 18 16 14 22 22 C 1.38729 * 120.03276 * 146.61289 * 5 4 2 23 23 H 1.08995 * 109.47737 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.47235 * 300.00184 * 1 2 3 25 25 H 1.09001 * 109.47658 * 59.99788 * 1 2 3 26 26 H 0.96998 * 119.99863 * 354.83815 * 4 2 1 27 27 H 1.07998 * 119.96589 * 0.02562 * 6 5 4 28 28 H 1.08003 * 119.92599 * 179.97438 * 7 6 5 29 29 H 1.07996 * 119.96524 * 180.02562 * 8 7 6 30 30 H 0.97003 * 119.99875 * 326.49314 * 10 9 8 31 31 H 1.09008 * 109.46972 * 299.99327 * 13 11 10 32 32 H 1.08991 * 109.47722 * 59.99539 * 13 11 10 33 33 H 0.97002 * 120.00196 * 179.97438 * 17 16 14 34 34 H 1.07993 * 120.07136 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5758 -1.1697 -0.1086 6 6 4.2154 -0.2008 -0.8720 7 6 5.5925 -0.2030 -0.9807 8 6 6.3384 -1.1674 -0.3303 9 6 5.7050 -2.1378 0.4356 10 7 6.4610 -3.1137 1.0943 11 6 6.0470 -3.5994 2.2813 12 8 5.0718 -3.1246 2.8240 13 6 6.7960 -4.7323 2.9345 14 6 6.1343 -5.0840 4.2421 15 1 5.2592 -4.5412 4.5676 16 6 6.6461 -6.0988 5.0226 17 7 7.7113 -6.7602 4.6258 18 14 5.8264 -6.5344 6.6436 19 1 4.6540 -5.6488 6.8592 20 1 5.3770 -7.9493 6.6067 21 1 6.7959 -6.3517 7.7535 22 6 4.3214 -2.1426 0.5410 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6988 -2.0055 0.0765 27 1 3.6353 0.5548 -1.3810 28 1 6.0873 0.5510 -1.5750 29 1 7.4148 -1.1661 -0.4169 30 1 7.2810 -3.4437 0.6945 31 1 6.7862 -5.6014 2.2766 32 1 7.8261 -4.4281 3.1193 33 1 8.0716 -7.4739 5.1752 34 1 3.8263 -2.8989 1.1320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -74.834540 kcal Electronic energy + Delta-G solvation = -18685.928876 eV Core-core repulsion = 15582.488652 eV Total energy + Delta-G solvation = -3103.440224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75140 -40.88590 -39.09393 -36.32880 -35.14693 -35.07975 -31.81048 -31.68567 -30.16876 -29.27213 -25.97929 -23.89075 -23.71452 -21.78903 -21.02165 -19.33631 -18.56833 -18.00727 -17.62662 -17.24247 -16.81496 -16.50458 -16.36590 -16.16918 -15.19468 -15.02091 -14.71710 -14.44961 -14.24075 -13.92881 -13.42043 -13.31120 -13.12078 -12.93383 -12.81171 -12.65843 -12.62087 -12.08065 -11.75366 -11.46548 -11.20021 -10.83931 -10.64262 -10.58086 -9.40337 -8.95495 -8.27547 -6.34744 0.22221 0.35156 1.38836 1.40332 1.52522 1.54270 1.78308 2.03039 2.27402 2.45641 2.86747 3.08542 3.75965 3.96963 4.15894 4.25016 4.28681 4.40483 4.53201 4.56915 4.63693 4.71331 5.02844 5.04347 5.21276 5.27071 5.31114 5.38546 5.45570 5.58312 5.71611 6.00723 6.08426 6.40512 6.58719 6.78965 7.06909 7.27550 7.38918 8.84703 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.004374 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.628115 B = 6400.415050 C = 7345.299425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.504 3.496 3 O -0.576 6.576 4 N -0.667 5.667 5 C 0.151 3.849 6 C -0.154 4.154 7 C -0.076 4.076 8 C -0.160 4.160 9 C 0.156 3.844 10 N -0.670 5.670 11 C 0.519 3.481 12 O -0.559 6.559 13 C 0.010 3.990 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.963 3.037 19 H -0.276 1.276 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.171 4.171 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.424 0.576 27 H 0.131 0.869 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.425 0.575 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.268 0.732 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 9.580 -14.363 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.295 3.705 3 O -0.455 6.455 4 N -0.313 5.313 5 C 0.056 3.944 6 C -0.175 4.175 7 C -0.095 4.095 8 C -0.181 4.181 9 C 0.061 3.939 10 N -0.316 5.316 11 C 0.310 3.690 12 O -0.436 6.436 13 C -0.029 4.029 14 C -0.575 4.575 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.788 3.212 19 H -0.201 1.201 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.194 4.194 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.179 0.821 29 H 0.172 0.828 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.099 10.449 -13.888 19.618 hybrid contribution 0.029 -1.076 0.922 1.418 sum -9.070 9.373 -12.966 18.391 Atomic orbital electron populations 1.21904 0.86532 1.06817 1.06592 1.21961 0.92788 0.82192 0.73587 1.90712 1.71848 1.32706 1.50237 1.43778 1.04555 1.10933 1.72027 1.17662 0.83924 0.96643 0.96148 1.21170 0.95774 0.99912 1.00641 1.21154 0.92624 0.97686 0.98025 1.21187 1.01428 0.94357 1.01139 1.17847 0.90307 0.90915 0.94848 1.43712 1.27503 1.39864 1.20556 1.21760 0.84286 0.83462 0.79503 1.90543 1.28999 1.60082 1.64020 1.19106 0.96366 0.91500 0.95922 1.21369 1.13436 1.17856 1.04882 0.92639 1.25745 0.95549 0.95653 1.01678 1.70021 1.23217 1.23328 1.39690 0.85426 0.78503 0.78128 0.79155 1.20064 1.19669 1.19875 1.20808 0.93387 1.02558 1.02614 0.87538 0.87742 0.86714 0.73735 0.85157 0.82133 0.82788 0.73630 0.93201 0.93418 0.92316 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.39 71.23 0.74 -1.11 16 2 C 0.50 11.75 7.68 87.66 0.67 12.42 16 3 O -0.58 -18.56 14.80 -3.06 -0.05 -18.61 16 4 N -0.67 -15.87 5.34 -303.56 -1.62 -17.49 16 5 C 0.15 4.56 6.27 38.14 0.24 4.80 16 6 C -0.15 -4.32 8.65 22.41 0.19 -4.12 16 7 C -0.08 -1.81 10.03 22.23 0.22 -1.59 16 8 C -0.16 -4.10 9.96 22.42 0.22 -3.88 16 9 C 0.16 5.11 6.27 38.13 0.24 5.35 16 10 N -0.67 -22.91 5.34 -303.57 -1.62 -24.54 16 11 C 0.52 23.41 7.56 87.66 0.66 24.07 16 12 O -0.56 -29.07 13.16 -3.05 -0.04 -29.11 16 13 C 0.01 0.52 5.46 29.10 0.16 0.68 16 14 C -0.54 -31.04 8.92 25.60 0.23 -30.81 16 15 H 0.06 3.39 6.75 -2.91 -0.02 3.37 16 16 C 0.01 0.71 5.46 84.66 0.46 1.18 16 17 N -0.92 -52.95 13.29 21.45 0.28 -52.67 16 18 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.17 -5.92 8.57 22.51 0.19 -5.72 16 23 H 0.11 0.65 7.92 -2.39 -0.02 0.63 16 24 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.42 7.46 8.66 -92.71 -0.80 6.65 16 27 H 0.13 3.63 6.43 -2.91 -0.02 3.61 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.43 11.40 8.82 -92.71 -0.82 10.58 16 31 H 0.05 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.61 16 34 H 0.12 4.52 6.43 -2.91 -0.02 4.51 16 Total: -1.00 -76.68 300.01 2.75 -73.93 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.47 Total: 20.52 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 4.24 Total: 1.27 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -2.96 Total: -94.69 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.09 Total: -47.72 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.68 2.75 -73.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.907 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds