Wall clock time and date at job start Mon Mar 30 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 119.99826 * 2 1 4 4 H 1.09002 * 109.50471 * 180.02562 * 3 2 1 5 5 C 1.53119 * 109.50198 * 300.08095 * 3 2 1 6 6 C 1.53119 * 109.15731 * 177.63356 * 5 3 2 7 7 C 1.53039 * 109.28129 * 302.34211 * 6 5 3 8 8 N 1.46848 * 109.51997 * 59.18522 * 7 6 5 9 9 C 1.46897 * 111.00171 * 174.16537 * 8 7 6 10 10 C 1.46855 * 111.19639 * 298.25566 * 8 7 6 11 11 S 1.65596 * 120.00708 * 180.02562 * 2 1 3 12 12 O 1.42104 * 106.39787 * 23.53366 * 11 2 1 13 13 O 1.42096 * 106.40828 * 156.45690 * 11 2 1 14 14 C 1.76202 * 107.21737 * 269.99858 * 11 2 1 15 15 H 1.07996 * 120.00195 * 0.02562 * 14 11 2 16 16 C 1.37881 * 119.99931 * 179.97438 * 14 11 2 17 17 N 1.31507 * 119.99899 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99774 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46569 * 90.00606 * 18 16 14 20 20 H 1.48504 * 109.46927 * 210.00225 * 18 16 14 21 21 H 1.48496 * 109.47346 * 330.00370 * 18 16 14 22 22 H 1.08994 * 109.47741 * 89.99873 * 1 2 3 23 23 H 1.09005 * 109.46647 * 210.00056 * 1 2 3 24 24 H 1.09005 * 109.47433 * 329.99317 * 1 2 3 25 25 H 1.08999 * 109.52613 * 297.53927 * 5 3 2 26 26 H 1.09004 * 109.52408 * 57.66772 * 5 3 2 27 27 H 1.08998 * 109.50840 * 62.28812 * 6 5 3 28 28 H 1.09009 * 109.50099 * 182.36576 * 6 5 3 29 29 H 1.09001 * 109.46699 * 179.19867 * 7 6 5 30 30 H 1.09004 * 109.46628 * 299.18083 * 7 6 5 31 31 H 1.09000 * 109.47656 * 63.94551 * 9 8 7 32 32 H 1.08995 * 109.47203 * 183.95250 * 9 8 7 33 33 H 1.09004 * 109.46800 * 303.95007 * 9 8 7 34 34 H 1.09003 * 109.46449 * 301.72795 * 10 8 7 35 35 H 1.08992 * 109.46444 * 181.76011 * 10 8 7 36 36 H 0.97003 * 120.00099 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2692 1.0703 -0.0005 5 6 1.8265 2.0732 -1.2490 6 6 2.5505 3.4219 -1.2114 7 6 2.1697 4.1643 0.0715 8 7 2.5456 3.3542 1.2372 9 6 2.3218 4.0937 2.4866 10 6 1.8269 2.0736 1.2479 11 16 2.2931 -1.4340 -0.0006 12 8 1.4114 -2.4062 -0.5454 13 8 3.5760 -1.1564 -0.5450 14 6 2.5540 -1.8864 1.6822 15 1 2.1868 -1.2517 2.4752 16 6 3.2260 -3.0512 1.9867 17 7 3.6726 -3.8242 1.0212 18 14 3.5031 -3.5304 3.7709 19 1 2.3638 -4.3570 4.2440 20 1 4.7615 -4.3107 3.8840 21 1 3.6044 -2.3045 4.6027 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5140 25 1 2.1282 1.5225 -2.1399 26 1 0.7491 2.2376 -1.2697 27 1 3.6278 3.2573 -1.2305 28 1 2.2578 4.0163 -2.0770 29 1 2.6946 5.1189 0.1082 30 1 1.0941 4.3406 0.0836 31 1 1.2571 4.2958 2.6035 32 1 2.6734 3.4984 3.3291 33 1 2.8689 5.0360 2.4540 34 1 0.7529 2.2598 1.2543 35 1 2.1028 1.5097 2.1388 36 1 4.1457 -4.6435 1.2354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053246510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:31 Heat of formation + Delta-G solvation = -88.408607 kcal Electronic energy + Delta-G solvation = -19203.306213 eV Core-core repulsion = 16234.721324 eV Total energy + Delta-G solvation = -2968.584889 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.05524 -35.36102 -35.23581 -33.91223 -33.04174 -32.59393 -29.42857 -26.64722 -26.09651 -25.64220 -22.70645 -22.08286 -19.32525 -18.66364 -17.31851 -16.24308 -15.92310 -15.05791 -15.00820 -14.80593 -14.32051 -14.04287 -13.75230 -13.27950 -13.05494 -12.92977 -12.48592 -12.20657 -11.97717 -11.77984 -11.62012 -11.26212 -11.19628 -11.15636 -10.82640 -10.58920 -10.54568 -10.35421 -10.24454 -10.06212 -9.89419 -9.22224 -8.88581 -8.30631 -8.09671 -6.66722 -5.28630 2.28787 3.08263 3.14850 3.21429 3.95589 4.11183 4.58998 4.66996 5.00338 5.07405 5.10234 5.22943 5.44999 5.47005 5.58917 5.63619 5.72311 5.80414 5.85355 5.87449 5.89515 6.00503 6.08510 6.14077 6.22515 6.29054 6.43126 6.51286 6.53705 6.84288 7.14960 7.19446 7.35490 7.65135 8.00263 8.91991 10.26897 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.007552 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.381587 B = 3706.649946 C = 4323.987885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.011 6.011 3 C 0.157 3.843 4 H 0.110 0.890 5 C -0.129 4.129 6 C -0.116 4.116 7 C 0.056 3.944 8 N -0.541 5.541 9 C 0.028 3.972 10 C 0.046 3.954 11 S 2.714 3.286 12 O -1.004 7.004 13 O -1.002 7.002 14 C -1.019 5.019 15 H 0.101 0.899 16 C 0.133 3.867 17 N -0.846 5.846 18 Si 0.919 3.081 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.262 1.262 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 13.908 1.056 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.845 5.845 3 C 0.049 3.951 4 H 0.128 0.872 5 C -0.168 4.168 6 C -0.155 4.155 7 C -0.072 4.072 8 N -0.266 5.266 9 C -0.121 4.121 10 C -0.083 4.083 11 S 2.815 3.185 12 O -0.994 6.994 13 O -0.992 6.992 14 C -1.153 5.153 15 H 0.119 0.881 16 C -0.085 4.085 17 N -0.476 5.476 18 Si 0.743 3.257 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.186 1.186 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.733 13.175 0.148 13.695 hybrid contribution -0.877 0.002 1.700 1.913 sum -4.610 13.178 1.848 14.083 Atomic orbital electron populations 1.21215 0.80519 1.02051 1.00757 1.58009 1.14030 1.21588 1.90884 1.20648 0.98023 0.83490 0.92906 0.87209 1.21950 1.00117 0.95767 0.98981 1.21573 1.01843 0.95847 0.96198 1.22114 0.98023 0.96304 0.90782 1.61824 1.58098 1.04360 1.02348 1.22332 0.98898 0.98600 0.92244 1.22513 0.95667 0.90020 1.00103 1.00566 0.71773 0.69605 0.76546 1.93355 1.67300 1.57808 1.80969 1.93351 1.40911 1.83973 1.80962 1.30622 1.50089 1.16794 1.17753 0.88061 1.24744 0.90135 0.93415 1.00167 1.69895 1.31130 1.12788 1.33801 0.86189 0.78417 0.79179 0.81926 1.19248 1.19950 1.18650 0.93778 0.91001 0.92579 0.91207 0.92144 0.90598 0.91478 0.90964 0.95222 0.96012 0.91173 0.91564 0.94650 0.89812 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 9.30 59.84 0.56 2.28 16 2 N -1.01 -20.74 3.08 -114.52 -0.35 -21.09 16 3 C 0.16 2.84 2.67 -67.85 -0.18 2.66 16 4 H 0.11 2.27 6.91 -51.93 -0.36 1.91 16 5 C -0.13 -1.93 5.32 -26.61 -0.14 -2.07 16 6 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 7 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 8 N -0.54 -7.51 4.91 -242.95 -1.19 -8.71 16 9 C 0.03 0.31 9.59 60.06 0.58 0.89 16 10 C 0.05 0.73 4.74 -3.83 -0.02 0.71 16 11 S 2.71 73.00 4.92 -107.50 -0.53 72.47 16 12 O -1.00 -29.59 17.09 -57.17 -0.98 -30.57 16 13 O -1.00 -29.45 16.58 -57.17 -0.95 -30.40 16 14 C -1.02 -28.27 9.75 30.60 0.30 -27.97 16 15 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 16 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 17 N -0.85 -25.16 13.19 55.43 0.73 -24.43 16 18 Si 0.92 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 1.27 7.79 -51.93 -0.40 0.87 16 24 H 0.06 0.78 6.41 -51.93 -0.33 0.45 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.04 0.51 6.63 -51.93 -0.34 0.17 16 35 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 36 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -34.25 301.80 -8.53 -42.78 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.60 Total: 0.50 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 0.81 Total: -20.83 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.81 Total: -54.23 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -1.93 Total: -60.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 73.00 SS G_CDS: -0.53 Total: 72.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.25 -8.53 -42.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053246510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.626 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds