Wall clock time and date at job start Mon Mar 30 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 119.99826 * 2 1 4 4 H 1.09002 * 109.50471 * 180.02562 * 3 2 1 5 5 C 1.53119 * 109.50198 * 300.08095 * 3 2 1 6 6 C 1.53119 * 109.15731 * 177.63356 * 5 3 2 7 7 C 1.53039 * 109.28129 * 302.34211 * 6 5 3 8 8 N 1.46848 * 109.51997 * 59.18522 * 7 6 5 9 9 C 1.46897 * 111.00171 * 174.16537 * 8 7 6 10 10 C 1.46855 * 111.19639 * 298.25566 * 8 7 6 11 11 S 1.65596 * 120.00708 * 180.02562 * 2 1 3 12 12 O 1.42104 * 106.39787 * 23.53366 * 11 2 1 13 13 O 1.42096 * 106.40828 * 156.45690 * 11 2 1 14 14 C 1.76202 * 107.21737 * 269.99858 * 11 2 1 15 15 H 1.07996 * 120.00195 * 0.02562 * 14 11 2 16 16 C 1.37881 * 119.99931 * 179.97438 * 14 11 2 17 17 N 1.31507 * 119.99899 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99774 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46569 * 90.00606 * 18 16 14 20 20 H 1.48504 * 109.46927 * 210.00225 * 18 16 14 21 21 H 1.48496 * 109.47346 * 330.00370 * 18 16 14 22 22 H 1.08994 * 109.47741 * 89.99873 * 1 2 3 23 23 H 1.09005 * 109.46647 * 210.00056 * 1 2 3 24 24 H 1.09005 * 109.47433 * 329.99317 * 1 2 3 25 25 H 1.08999 * 109.52613 * 297.53927 * 5 3 2 26 26 H 1.09004 * 109.52408 * 57.66772 * 5 3 2 27 27 H 1.08998 * 109.50840 * 62.28812 * 6 5 3 28 28 H 1.09009 * 109.50099 * 182.36576 * 6 5 3 29 29 H 1.09001 * 109.46699 * 179.19867 * 7 6 5 30 30 H 1.09004 * 109.46628 * 299.18083 * 7 6 5 31 31 H 1.09000 * 109.47656 * 63.94551 * 9 8 7 32 32 H 1.08995 * 109.47203 * 183.95250 * 9 8 7 33 33 H 1.09004 * 109.46800 * 303.95007 * 9 8 7 34 34 H 1.09003 * 109.46449 * 301.72795 * 10 8 7 35 35 H 1.08992 * 109.46444 * 181.76011 * 10 8 7 36 36 H 0.97003 * 120.00099 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2692 1.0703 -0.0005 5 6 1.8265 2.0732 -1.2490 6 6 2.5505 3.4219 -1.2114 7 6 2.1697 4.1643 0.0715 8 7 2.5456 3.3542 1.2372 9 6 2.3218 4.0937 2.4866 10 6 1.8269 2.0736 1.2479 11 16 2.2931 -1.4340 -0.0006 12 8 1.4114 -2.4062 -0.5454 13 8 3.5760 -1.1564 -0.5450 14 6 2.5540 -1.8864 1.6822 15 1 2.1868 -1.2517 2.4752 16 6 3.2260 -3.0512 1.9867 17 7 3.6726 -3.8242 1.0212 18 14 3.5031 -3.5304 3.7709 19 1 2.3638 -4.3570 4.2440 20 1 4.7615 -4.3107 3.8840 21 1 3.6044 -2.3045 4.6027 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5140 25 1 2.1282 1.5225 -2.1399 26 1 0.7491 2.2376 -1.2697 27 1 3.6278 3.2573 -1.2305 28 1 2.2578 4.0163 -2.0770 29 1 2.6946 5.1189 0.1082 30 1 1.0941 4.3406 0.0836 31 1 1.2571 4.2958 2.6035 32 1 2.6734 3.4984 3.3291 33 1 2.8689 5.0360 2.4540 34 1 0.7529 2.2598 1.2543 35 1 2.1028 1.5097 2.1388 36 1 4.1457 -4.6435 1.2354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053246510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:31 Heat of formation + Delta-G solvation = -116.144539 kcal Electronic energy + Delta-G solvation = -19204.508933 eV Core-core repulsion = 16234.721324 eV Total energy + Delta-G solvation = -2969.787609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23261 -37.45475 -36.72872 -36.13879 -35.16791 -33.70990 -30.68935 -28.27895 -27.62316 -27.06684 -23.79910 -23.30942 -20.79848 -20.44785 -19.16051 -18.29692 -17.27055 -17.02086 -16.23571 -16.18047 -15.84075 -15.45452 -15.24304 -14.83364 -14.44373 -14.18129 -13.95916 -13.57369 -13.44377 -13.24169 -13.10901 -13.02266 -12.67275 -12.50589 -12.48012 -12.37569 -12.31798 -12.12879 -11.69248 -11.52225 -11.34490 -11.26040 -10.95013 -9.81376 -9.20299 -8.75108 -7.49243 0.29199 1.31982 1.32992 1.49085 2.19151 2.56711 2.71178 3.13347 3.74428 3.82353 3.89570 4.00244 4.14072 4.23642 4.37170 4.49248 4.55038 4.60084 4.65453 4.67787 4.76765 4.80878 4.85289 4.94670 5.00892 5.06665 5.09889 5.17538 5.28462 5.33061 5.49273 5.89340 5.93072 6.16306 6.23450 6.77072 8.20214 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.007552 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.381587 B = 3706.649946 C = 4323.987885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.006 6.006 3 C 0.149 3.851 4 H 0.073 0.927 5 C -0.126 4.126 6 C -0.113 4.113 7 C 0.056 3.944 8 N -0.562 5.562 9 C 0.028 3.972 10 C 0.055 3.945 11 S 2.716 3.284 12 O -1.041 7.041 13 O -1.040 7.040 14 C -1.039 5.039 15 H 0.118 0.882 16 C 0.069 3.931 17 N -0.896 5.896 18 Si 0.989 3.011 19 H -0.252 1.252 20 H -0.262 1.262 21 H -0.248 1.248 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 16.139 2.574 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.844 5.844 3 C 0.042 3.958 4 H 0.091 0.909 5 C -0.166 4.166 6 C -0.151 4.151 7 C -0.071 4.071 8 N -0.287 5.287 9 C -0.120 4.120 10 C -0.074 4.074 11 S 2.818 3.182 12 O -1.031 7.031 13 O -1.031 7.031 14 C -1.172 5.172 15 H 0.136 0.864 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.807 3.193 19 H -0.176 1.176 20 H -0.186 1.186 21 H -0.171 1.171 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.877 15.423 1.648 16.260 hybrid contribution -0.546 -0.604 1.164 1.421 sum -5.423 14.819 2.812 16.029 Atomic orbital electron populations 1.21500 0.78061 1.03478 1.02185 1.57475 1.15431 1.20547 1.90912 1.20842 0.95869 0.82901 0.96170 0.90903 1.21951 1.01726 0.96502 0.96403 1.21595 1.00591 0.94737 0.98207 1.22192 0.99213 0.96492 0.89186 1.61793 1.58454 1.04266 1.04235 1.22379 0.99997 0.98863 0.90740 1.22303 0.96833 0.90684 0.97603 1.00100 0.71165 0.70465 0.76454 1.93292 1.67829 1.60314 1.81635 1.93289 1.43210 1.84901 1.81662 1.30971 1.50243 1.17471 1.18548 0.86433 1.26038 0.89401 0.93211 1.05683 1.69991 1.32349 1.13772 1.36626 0.85151 0.79254 0.79638 0.75269 1.17641 1.18621 1.17112 0.92419 0.92090 0.88605 0.92891 0.90024 0.92148 0.88522 0.88785 0.93742 0.94763 0.91889 0.89680 0.92741 0.91638 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.04 9.30 127.77 1.19 4.23 16 2 N -1.01 -41.52 3.08 -516.23 -1.59 -43.11 16 3 C 0.15 5.37 2.67 45.04 0.12 5.49 16 4 H 0.07 3.15 6.91 -2.39 -0.02 3.14 16 5 C -0.13 -3.63 5.32 30.67 0.16 -3.46 16 6 C -0.11 -2.54 6.09 30.65 0.19 -2.36 16 7 C 0.06 1.13 5.46 86.33 0.47 1.60 16 8 N -0.56 -14.31 4.91 -922.57 -4.53 -18.84 16 9 C 0.03 0.55 9.59 127.69 1.22 1.77 16 10 C 0.06 1.65 4.74 86.32 0.41 2.06 16 11 S 2.72 151.33 4.92 -56.49 -0.28 151.05 16 12 O -1.04 -63.65 17.09 -128.00 -2.19 -65.84 16 13 O -1.04 -64.34 16.58 -128.00 -2.12 -66.47 16 14 C -1.04 -58.65 9.75 67.74 0.66 -57.99 16 15 H 0.12 6.00 7.81 -2.91 -0.02 5.97 16 16 C 0.07 3.94 5.46 84.66 0.46 4.40 16 17 N -0.90 -54.73 13.19 21.45 0.28 -54.45 16 18 Si 0.99 42.02 29.54 68.60 2.03 44.05 16 19 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 2.13 7.79 -2.38 -0.02 2.11 16 24 H 0.10 2.36 6.41 -2.38 -0.02 2.35 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.98 7.60 -2.38 -0.02 1.97 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.34 8.10 -2.38 -0.02 1.32 16 34 H 0.05 1.39 6.63 -2.39 -0.02 1.38 16 35 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 36 H 0.30 16.36 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -77.07 301.80 -2.46 -79.54 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.05 Total: 18.32 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 4.89 Total: -44.25 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -5.84 Total: -116.40 kcal Atomic # 8 Polarization: -127.99 SS G_CDS: -4.31 Total: -132.31 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 151.33 SS G_CDS: -0.28 Total: 151.05 kcal Total: -77.07 -2.46 -79.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053246510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.609 kcal (2) G-P(sol) polarization free energy of solvation -77.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds