Wall clock time and date at job start Mon Mar 30 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46795 * 2 1 4 4 C 1.50696 * 109.47013 * 119.99740 * 2 1 3 5 5 H 1.07997 * 120.00303 * 120.00314 * 4 2 1 6 6 C 1.37880 * 120.00360 * 299.99571 * 4 2 1 7 7 N 1.31510 * 120.00383 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99622 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46960 * 89.99728 * 8 6 4 10 10 H 1.48500 * 109.46838 * 209.99763 * 8 6 4 11 11 H 1.48498 * 109.47102 * 329.99662 * 8 6 4 12 12 N 1.46899 * 109.46770 * 239.99718 * 2 1 3 13 13 C 1.46898 * 111.00078 * 60.00175 * 12 2 1 14 14 C 1.53239 * 109.36131 * 172.75912 * 13 12 2 15 15 N 1.47082 * 108.52172 * 53.81212 * 14 13 12 16 16 S 1.65603 * 120.87671 * 128.83784 * 15 14 13 17 17 C 1.81405 * 104.44716 * 90.00010 * 16 15 14 18 18 O 1.42094 * 104.27434 * 206.06949 * 16 15 14 19 19 O 1.42098 * 104.28074 * 333.92997 * 16 15 14 20 20 C 1.47079 * 118.23783 * 308.81567 * 15 14 13 21 21 C 1.46895 * 111.02270 * 295.67693 * 12 2 1 22 22 H 1.08996 * 109.47522 * 60.00178 * 1 2 3 23 23 H 1.09004 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47184 * 300.00460 * 1 2 3 25 25 H 0.96998 * 120.00224 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.49547 * 52.78254 * 13 12 2 27 27 H 1.08996 * 109.48904 * 292.72845 * 13 12 2 28 28 H 1.08992 * 109.62993 * 173.52545 * 14 13 12 29 29 H 1.09000 * 109.62499 * 293.91021 * 14 13 12 30 30 H 1.09005 * 109.46945 * 60.00259 * 17 16 15 31 31 H 1.09001 * 109.46456 * 179.97438 * 17 16 15 32 32 H 1.08992 * 109.47387 * 299.99567 * 17 16 15 33 33 H 1.08996 * 109.62593 * 170.89556 * 20 15 14 34 34 H 1.09003 * 109.62988 * 291.47633 * 20 15 14 35 35 H 1.08998 * 109.46755 * 67.27279 * 21 12 2 36 36 H 1.09001 * 109.51714 * 307.22017 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6249 1.2793 2.6541 9 1 -0.8027 0.8729 2.6997 10 1 0.9761 1.9953 3.9067 11 1 0.8472 2.1766 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.5486 -0.0265 -2.4211 14 6 2.2230 -0.6648 -3.6400 15 7 1.9922 -2.1167 -3.5947 16 16 1.3876 -2.9226 -4.9091 17 6 2.8566 -3.4207 -5.8496 18 8 0.7406 -4.0601 -4.3555 19 8 0.6528 -1.9346 -5.6184 20 6 2.3130 -2.8339 -2.3514 21 6 1.6351 -2.1102 -1.1832 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9027 -0.5282 4.4376 26 1 1.8017 1.0329 -2.3785 27 1 0.4675 -0.1391 -2.5029 28 1 1.7930 -0.2540 -4.5534 29 1 3.2934 -0.4604 -3.6151 30 1 3.4833 -4.0634 -5.2312 31 1 2.5489 -3.9646 -6.7428 32 1 3.4202 -2.5341 -6.1399 33 1 1.9425 -3.8571 -2.4129 34 1 3.3926 -2.8409 -2.2008 35 1 0.5528 -2.1942 -1.2822 36 1 1.9505 -2.5624 -0.2429 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053604927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:25 Heat of formation + Delta-G solvation = -43.598888 kcal Electronic energy + Delta-G solvation = -19078.397698 eV Core-core repulsion = 16111.755905 eV Total energy + Delta-G solvation = -2966.641793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.71174 -37.18742 -35.97941 -35.20559 -32.35708 -30.77919 -29.87054 -29.51012 -25.64737 -25.11249 -23.31983 -21.19167 -19.68220 -18.47727 -17.52057 -16.67558 -16.33098 -16.03041 -15.25371 -14.52739 -14.47810 -14.32262 -13.84462 -13.55996 -13.33641 -13.23798 -12.78178 -12.53640 -12.32041 -12.20492 -12.11042 -11.74478 -11.51326 -11.26962 -11.14794 -10.98434 -10.77459 -10.50040 -10.29539 -9.92592 -9.50981 -9.07219 -8.82930 -8.61178 -7.37156 -6.09565 -4.08353 0.19171 2.60444 3.25376 3.35380 3.37574 3.82892 4.04941 4.37692 4.52873 4.70268 4.79060 4.86568 5.22600 5.42178 5.45496 5.49810 5.63264 5.75927 5.81399 5.96009 6.14717 6.18361 6.24354 6.35233 6.43600 6.56125 6.59619 6.72041 6.91163 7.21156 7.57604 7.90146 8.04526 8.61392 8.95448 9.52517 11.03017 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043413 B = 0.005499 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.815278 B = 5090.404556 C = 5309.101842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.042 0.958 4 C -0.507 4.507 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.519 5.519 13 C 0.039 3.961 14 C 0.125 3.875 15 N -0.998 5.998 16 S 2.609 3.391 17 C -0.675 4.675 18 O -0.956 6.956 19 O -0.960 6.960 20 C 0.120 3.880 21 C 0.049 3.951 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.264 0.736 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -2.638 -17.116 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.074 3.926 3 H 0.060 0.940 4 C -0.545 4.545 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.193 1.193 12 N -0.243 5.243 13 C -0.091 4.091 14 C -0.001 4.001 15 N -0.837 5.837 16 S 2.702 3.298 17 C -0.824 4.824 18 O -0.947 6.947 19 O -0.951 6.951 20 C -0.005 4.005 21 C -0.080 4.080 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.375 -2.783 -17.126 17.405 hybrid contribution -0.809 0.777 0.151 1.132 sum 0.566 -2.006 -16.975 17.103 Atomic orbital electron populations 1.22831 1.01720 1.01024 0.98999 1.19779 0.88696 0.95443 0.88727 0.94033 1.20959 1.31802 1.13839 0.87880 0.89812 1.24911 0.95775 0.96571 0.95833 1.69870 1.45609 1.40294 0.97900 0.86873 0.80538 0.83883 0.76892 1.20834 1.22483 1.19346 1.62055 1.59149 1.01662 1.01392 1.22369 0.97348 0.98527 0.90882 1.21568 1.01041 0.78277 0.99176 1.57693 1.82814 1.16698 1.26525 1.04867 0.76453 0.74178 0.74328 1.30609 1.23603 1.12588 1.15591 1.93597 1.71998 1.52692 1.76396 1.93581 1.68305 1.58966 1.74206 1.21735 1.00743 0.95285 0.82694 1.22355 0.97244 0.89957 0.98469 0.95056 0.92724 0.93740 0.92602 0.90342 0.94728 0.89364 0.90932 0.85419 0.85941 0.85544 0.89223 0.90870 0.95104 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.06 7.99 37.16 0.30 -3.77 16 2 C 0.18 4.14 2.00 -68.87 -0.14 4.00 16 3 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 4 C -0.51 -13.58 8.42 -34.44 -0.29 -13.87 16 5 H 0.08 2.41 6.65 -52.49 -0.35 2.06 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 8 Si 0.89 21.63 24.37 -169.99 -4.14 17.49 16 9 H -0.28 -6.77 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.52 -10.11 4.65 -227.74 -1.06 -11.17 16 13 C 0.04 0.63 4.99 -3.70 -0.02 0.62 16 14 C 0.12 1.61 6.62 -3.60 -0.02 1.58 16 15 N -1.00 -12.94 3.26 -113.24 -0.37 -13.31 16 16 S 2.61 30.50 6.11 -107.50 -0.66 29.84 16 17 C -0.67 -4.82 10.99 101.05 1.11 -3.71 16 18 O -0.96 -14.37 16.61 -57.54 -0.96 -15.33 16 19 O -0.96 -13.95 16.61 -57.54 -0.96 -14.90 16 20 C 0.12 1.71 6.62 -3.61 -0.02 1.69 16 21 C 0.05 0.91 4.88 -3.71 -0.02 0.89 16 22 H 0.03 0.60 6.57 -51.93 -0.34 0.26 16 23 H 0.05 1.18 6.67 -51.93 -0.35 0.84 16 24 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 27 H 0.03 0.59 6.72 -51.93 -0.35 0.25 16 28 H 0.09 1.01 6.87 -51.93 -0.36 0.65 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.12 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.18 6.87 -51.93 -0.36 0.82 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.59 6.79 -51.93 -0.35 0.24 16 36 H 0.11 2.15 5.99 -51.93 -0.31 1.84 16 LS Contribution 284.75 15.07 4.29 4.29 Total: -1.00 -33.47 284.75 -7.30 -40.76 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.02 Total: -1.01 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 0.80 Total: -10.67 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.65 Total: -50.47 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.91 Total: -30.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Atomic # 16 Polarization: 30.50 SS G_CDS: -0.66 Total: 29.84 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.47 -7.30 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053604927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.838 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds