Wall clock time and date at job start Mon Mar 30 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46795 * 2 1 4 4 C 1.50696 * 109.47013 * 119.99740 * 2 1 3 5 5 H 1.07997 * 120.00303 * 120.00314 * 4 2 1 6 6 C 1.37880 * 120.00360 * 299.99571 * 4 2 1 7 7 N 1.31510 * 120.00383 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99622 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46960 * 89.99728 * 8 6 4 10 10 H 1.48500 * 109.46838 * 209.99763 * 8 6 4 11 11 H 1.48498 * 109.47102 * 329.99662 * 8 6 4 12 12 N 1.46899 * 109.46770 * 239.99718 * 2 1 3 13 13 C 1.46898 * 111.00078 * 60.00175 * 12 2 1 14 14 C 1.53239 * 109.36131 * 172.75912 * 13 12 2 15 15 N 1.47082 * 108.52172 * 53.81212 * 14 13 12 16 16 S 1.65603 * 120.87671 * 128.83784 * 15 14 13 17 17 C 1.81405 * 104.44716 * 90.00010 * 16 15 14 18 18 O 1.42094 * 104.27434 * 206.06949 * 16 15 14 19 19 O 1.42098 * 104.28074 * 333.92997 * 16 15 14 20 20 C 1.47079 * 118.23783 * 308.81567 * 15 14 13 21 21 C 1.46895 * 111.02270 * 295.67693 * 12 2 1 22 22 H 1.08996 * 109.47522 * 60.00178 * 1 2 3 23 23 H 1.09004 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47184 * 300.00460 * 1 2 3 25 25 H 0.96998 * 120.00224 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.49547 * 52.78254 * 13 12 2 27 27 H 1.08996 * 109.48904 * 292.72845 * 13 12 2 28 28 H 1.08992 * 109.62993 * 173.52545 * 14 13 12 29 29 H 1.09000 * 109.62499 * 293.91021 * 14 13 12 30 30 H 1.09005 * 109.46945 * 60.00259 * 17 16 15 31 31 H 1.09001 * 109.46456 * 179.97438 * 17 16 15 32 32 H 1.08992 * 109.47387 * 299.99567 * 17 16 15 33 33 H 1.08996 * 109.62593 * 170.89556 * 20 15 14 34 34 H 1.09003 * 109.62988 * 291.47633 * 20 15 14 35 35 H 1.08998 * 109.46755 * 67.27279 * 21 12 2 36 36 H 1.09001 * 109.51714 * 307.22017 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6249 1.2793 2.6541 9 1 -0.8027 0.8729 2.6997 10 1 0.9761 1.9953 3.9067 11 1 0.8472 2.1766 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.5486 -0.0265 -2.4211 14 6 2.2230 -0.6648 -3.6400 15 7 1.9922 -2.1167 -3.5947 16 16 1.3876 -2.9226 -4.9091 17 6 2.8566 -3.4207 -5.8496 18 8 0.7406 -4.0601 -4.3555 19 8 0.6528 -1.9346 -5.6184 20 6 2.3130 -2.8339 -2.3514 21 6 1.6351 -2.1102 -1.1832 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9027 -0.5282 4.4376 26 1 1.8017 1.0329 -2.3785 27 1 0.4675 -0.1391 -2.5029 28 1 1.7930 -0.2540 -4.5534 29 1 3.2934 -0.4604 -3.6151 30 1 3.4833 -4.0634 -5.2312 31 1 2.5489 -3.9646 -6.7428 32 1 3.4202 -2.5341 -6.1399 33 1 1.9425 -3.8571 -2.4129 34 1 3.3926 -2.8409 -2.2008 35 1 0.5528 -2.1942 -1.2822 36 1 1.9505 -2.5624 -0.2429 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053604927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:25 Heat of formation + Delta-G solvation = -72.046220 kcal Electronic energy + Delta-G solvation = -19079.631267 eV Core-core repulsion = 16111.755905 eV Total energy + Delta-G solvation = -2967.875362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10966 -38.20031 -37.01757 -36.62844 -34.31562 -32.01793 -31.46839 -30.21822 -27.33988 -26.74610 -24.62757 -22.71406 -21.09636 -19.55045 -18.67339 -18.55925 -17.28079 -17.11773 -16.99922 -16.02491 -15.79655 -15.60092 -15.24157 -14.92588 -14.43383 -14.23496 -13.99076 -13.91394 -13.81622 -13.41237 -13.20546 -13.14841 -13.02861 -12.80437 -12.51928 -12.26757 -12.12111 -11.95648 -11.87294 -11.54702 -11.31323 -10.98344 -10.74110 -9.96074 -8.93200 -8.26028 -6.28058 -0.66981 1.30759 1.35721 1.45355 1.66741 2.32913 2.99598 3.08055 3.18952 3.25307 3.68114 4.12210 4.16236 4.24204 4.34448 4.39378 4.44938 4.49076 4.53396 4.58824 4.76700 4.81590 4.91329 4.96866 5.01713 5.12447 5.19191 5.26172 5.41939 5.63099 5.65023 6.06084 6.39143 6.71497 6.78646 7.36625 8.89885 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043413 B = 0.005499 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.815278 B = 5090.404556 C = 5309.101842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.182 3.818 3 H 0.040 0.960 4 C -0.502 4.502 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.299 1.299 11 H -0.248 1.248 12 N -0.524 5.524 13 C 0.032 3.968 14 C 0.128 3.872 15 N -1.004 6.004 16 S 2.609 3.391 17 C -0.642 4.642 18 O -0.999 6.999 19 O -0.994 6.994 20 C 0.131 3.869 21 C 0.049 3.951 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.090 0.910 27 H 0.023 0.977 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.015 0.985 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -1.901 -19.993 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.074 3.926 3 H 0.058 0.942 4 C -0.540 4.540 5 H 0.068 0.932 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.227 1.227 11 H -0.172 1.172 12 N -0.248 5.248 13 C -0.098 4.098 14 C 0.003 3.997 15 N -0.842 5.842 16 S 2.708 3.292 17 C -0.797 4.797 18 O -0.990 6.990 19 O -0.984 6.984 20 C 0.005 3.995 21 C -0.081 4.081 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.041 0.959 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.033 0.967 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.006 -2.024 -20.009 20.211 hybrid contribution -0.944 0.450 0.941 1.407 sum 1.062 -1.574 -19.068 19.163 Atomic orbital electron populations 1.22719 1.00732 1.00749 0.99799 1.19606 0.89338 0.94957 0.88725 0.94215 1.21223 1.30419 1.12680 0.89716 0.93172 1.25691 0.97347 0.99653 0.95558 1.70014 1.47827 1.42410 0.98482 0.85919 0.78823 0.80621 0.77326 1.20298 1.22674 1.17173 1.61999 1.59259 1.01990 1.01519 1.22561 0.97090 0.99461 0.90684 1.21621 1.02113 0.77988 0.97994 1.57631 1.82963 1.16897 1.26682 1.04669 0.77576 0.72954 0.74007 1.30303 1.19815 1.14240 1.15303 1.93544 1.74363 1.53603 1.77470 1.93536 1.70586 1.59984 1.74336 1.21549 1.01138 0.95090 0.81681 1.22301 0.96669 0.89915 0.99221 0.92415 0.93652 0.94572 0.92654 0.89126 0.95884 0.87494 0.88715 0.83504 0.83635 0.83080 0.88357 0.89183 0.96717 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.75 7.99 71.98 0.58 -7.17 16 2 C 0.18 8.29 2.00 44.17 0.09 8.37 16 3 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 4 C -0.50 -27.68 8.42 25.60 0.22 -27.46 16 5 H 0.05 3.04 6.65 -2.91 -0.02 3.02 16 6 C 0.01 0.85 5.45 84.66 0.46 1.31 16 7 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 8 Si 0.94 44.73 24.37 68.60 1.67 46.40 16 9 H -0.28 -12.76 6.87 99.48 0.68 -12.08 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.25 -10.81 6.53 99.48 0.65 -10.16 16 12 N -0.52 -20.17 4.65 -874.45 -4.06 -24.23 16 13 C 0.03 0.97 4.99 86.38 0.43 1.40 16 14 C 0.13 2.92 6.62 86.35 0.57 3.49 16 15 N -1.00 -23.75 3.26 -512.18 -1.67 -25.42 16 16 S 2.61 54.86 6.11 -56.49 -0.34 54.51 16 17 C -0.64 -5.91 10.99 113.37 1.25 -4.66 16 18 O -1.00 -29.02 16.61 -127.65 -2.12 -31.14 16 19 O -0.99 -26.93 16.61 -127.65 -2.12 -29.05 16 20 C 0.13 3.58 6.62 86.35 0.57 4.15 16 21 C 0.05 1.83 4.88 86.38 0.42 2.25 16 22 H 0.06 2.13 6.57 -2.39 -0.02 2.12 16 23 H 0.04 1.98 6.67 -2.39 -0.02 1.97 16 24 H 0.04 1.59 3.27 -2.38 -0.01 1.58 16 25 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.09 2.53 8.11 -2.39 -0.02 2.51 16 27 H 0.02 0.76 6.72 -2.39 -0.02 0.74 16 28 H 0.11 2.08 6.87 -2.39 -0.02 2.07 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.15 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 2.51 6.87 -2.39 -0.02 2.49 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.01 0.58 6.79 -2.39 -0.02 0.57 16 36 H 0.07 3.18 5.99 -2.39 -0.01 3.17 16 Total: -1.00 -74.98 284.75 -2.76 -77.74 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.00 Total: 7.52 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.58 Total: -18.32 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -5.43 Total: -107.66 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -4.24 Total: -60.19 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.40 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.34 Total: 54.51 kcal Total: -74.98 -2.76 -77.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053604927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.698 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds