Wall clock time and date at job start Mon Mar 30 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46902 * 111.00098 * 59.30027 * 12 2 1 14 14 C 1.53238 * 109.34041 * 172.74579 * 13 12 2 15 15 N 1.47076 * 108.52022 * 53.83033 * 14 13 12 16 16 S 1.65598 * 120.88039 * 128.79258 * 15 14 13 17 17 C 1.81395 * 104.45072 * 270.02409 * 16 15 14 18 18 O 1.42104 * 104.27948 * 26.09379 * 16 15 14 19 19 O 1.42100 * 104.28110 * 153.94867 * 16 15 14 20 20 C 1.47077 * 118.24029 * 308.81478 * 15 14 13 21 21 C 1.46901 * 110.99823 * 294.99910 * 12 2 1 22 22 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 24 24 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.49589 * 292.71228 * 13 12 2 27 27 H 1.09000 * 109.48686 * 52.78514 * 13 12 2 28 28 H 1.09000 * 109.62453 * 294.12063 * 14 13 12 29 29 H 1.09000 * 109.62806 * 173.54333 * 14 13 12 30 30 H 1.09001 * 109.47679 * 59.99918 * 17 16 15 31 31 H 1.09010 * 109.47170 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47243 * 299.99868 * 17 16 15 33 33 H 1.09000 * 109.63133 * 291.47591 * 20 15 14 34 34 H 1.09003 * 109.63058 * 170.89449 * 20 15 14 35 35 H 1.08991 * 109.49594 * 307.21469 * 21 12 2 36 36 H 1.09005 * 109.49119 * 67.27086 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0196 -0.6925 1.1995 13 6 1.5349 -2.0786 1.2420 14 6 2.2092 -2.8166 2.4033 15 7 1.9930 -2.0442 3.6361 16 16 1.3885 -2.7678 4.9975 17 6 -0.4100 -2.5873 4.8454 18 8 1.7656 -4.1316 4.8664 19 8 1.8811 -1.9711 6.0661 20 6 2.3275 -0.6120 3.6277 21 6 1.6486 0.0393 2.4181 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 0.7043 1.1577 -3.4845 26 1 0.4546 -2.0819 1.3870 27 1 1.7778 -2.5776 0.3038 28 1 3.2782 -2.9053 2.2094 29 1 1.7702 -3.8085 2.5109 30 1 -0.7495 -3.0833 3.9361 31 1 -0.8952 -3.0416 5.7094 32 1 -0.6663 -1.5289 4.7992 33 1 3.4079 -0.4887 3.5516 34 1 1.9668 -0.1463 4.5448 35 1 1.9739 1.0761 2.3330 36 1 0.5667 0.0069 2.5466 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053604930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:29 Heat of formation + Delta-G solvation = -54.110407 kcal Electronic energy + Delta-G solvation = -19067.111719 eV Core-core repulsion = 16100.014112 eV Total energy + Delta-G solvation = -2967.097607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.61266 -37.15093 -35.95760 -35.05540 -32.41872 -30.76984 -29.54664 -28.94350 -25.47518 -25.12700 -23.28113 -21.21621 -19.63439 -18.46193 -17.45314 -16.38551 -16.26930 -15.96261 -15.11234 -14.44290 -14.38281 -14.10781 -13.94358 -13.41810 -13.26246 -13.14591 -12.79374 -12.32902 -12.16289 -12.08565 -11.82341 -11.47205 -11.20344 -11.16548 -11.04756 -10.81614 -10.77705 -10.59922 -10.35573 -10.04152 -9.80957 -9.00924 -8.75361 -8.45024 -7.23246 -6.07295 -4.11467 0.25299 2.64359 3.26343 3.34950 3.38884 3.85300 4.10470 4.36104 4.61134 4.78608 4.86925 4.95659 5.25047 5.42596 5.54299 5.56243 5.66257 5.76494 5.83989 6.06290 6.21728 6.33486 6.47453 6.51432 6.64977 6.76587 6.81538 7.04246 7.40578 7.63444 7.76407 8.04136 8.30270 8.51486 8.94796 9.54296 10.99696 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.005350 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.444719 B = 5232.751204 C = 5462.183242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.527 5.527 13 C 0.047 3.953 14 C 0.125 3.875 15 N -0.997 5.997 16 S 2.611 3.389 17 C -0.676 4.676 18 O -0.960 6.960 19 O -0.961 6.961 20 C 0.129 3.871 21 C 0.038 3.962 22 H 0.028 0.972 23 H 0.007 0.993 24 H 0.088 0.912 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -4.574 12.028 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.252 5.252 13 C -0.083 4.083 14 C 0.000 4.000 15 N -0.836 5.836 16 S 2.704 3.296 17 C -0.825 4.825 18 O -0.950 6.950 19 O -0.951 6.951 20 C 0.003 3.997 21 C -0.092 4.092 22 H 0.047 0.953 23 H 0.026 0.974 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.597 -4.883 12.553 13.563 hybrid contribution -1.410 -0.040 -1.280 1.905 sum -3.007 -4.923 11.272 12.662 Atomic orbital electron populations 1.22409 1.00897 0.99231 1.00553 1.19327 0.89700 0.94627 0.85884 0.94147 1.21150 1.30509 1.12726 0.89632 0.91758 1.24935 0.95171 0.95089 0.99076 1.69890 1.36855 1.23202 1.23367 0.86465 0.78548 0.79661 0.82871 1.19688 1.21219 1.21072 1.62210 1.59578 1.01234 1.02144 1.22381 0.96128 0.91467 0.98321 1.21677 1.02265 0.93313 0.82790 1.57692 1.78498 1.18995 1.28402 1.04808 0.77428 0.73948 0.73403 1.30615 1.28909 1.11698 1.11260 1.93590 1.81111 1.34432 1.85861 1.93584 1.77732 1.70447 1.53385 1.21560 1.01406 0.78456 0.98240 1.22418 0.97213 0.98323 0.91286 0.95266 0.97424 0.89316 0.93028 0.95483 0.88501 0.90414 0.89893 0.85422 0.85912 0.85519 0.90397 0.89908 0.90334 0.95314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.29 37.16 0.31 -3.57 16 2 C 0.21 4.94 2.35 -68.86 -0.16 4.78 16 3 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 4 C -0.50 -12.94 7.83 -34.44 -0.27 -13.21 16 5 H 0.06 1.66 6.78 -52.49 -0.36 1.30 16 6 C 0.06 1.54 5.31 -17.82 -0.09 1.45 16 7 N -0.89 -24.54 11.31 55.43 0.63 -23.91 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.53 -10.28 4.61 -227.72 -1.05 -11.33 16 13 C 0.05 0.82 4.78 -3.70 -0.02 0.80 16 14 C 0.12 1.81 6.47 -3.60 -0.02 1.78 16 15 N -1.00 -13.49 3.26 -113.24 -0.37 -13.86 16 16 S 2.61 31.87 6.06 -107.50 -0.65 31.22 16 17 C -0.68 -5.96 10.99 101.05 1.11 -4.85 16 18 O -0.96 -14.38 16.79 -57.54 -0.97 -15.35 16 19 O -0.96 -14.16 16.79 -57.54 -0.97 -15.12 16 20 C 0.13 1.76 6.47 -3.60 -0.02 1.74 16 21 C 0.04 0.61 5.14 -3.70 -0.02 0.59 16 22 H 0.03 0.63 6.56 -51.93 -0.34 0.29 16 23 H 0.01 0.14 6.69 -51.93 -0.35 -0.21 16 24 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 25 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.03 0.46 6.71 -51.93 -0.35 0.11 16 27 H 0.10 1.84 6.32 -51.93 -0.33 1.51 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.05 7.19 -51.93 -0.37 0.68 16 30 H 0.13 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.12 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.97 7.19 -51.93 -0.37 0.59 16 35 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 36 H 0.03 0.45 6.81 -51.93 -0.35 0.10 16 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -31.21 292.72 -8.40 -39.61 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.22 Total: -0.76 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 0.81 Total: -10.49 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.79 Total: -49.11 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.93 Total: -30.47 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 31.87 SS G_CDS: -0.65 Total: 31.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.21 -8.40 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053604930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.504 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds