Wall clock time and date at job start Mon Mar 30 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46902 * 111.00098 * 59.30027 * 12 2 1 14 14 C 1.53238 * 109.34041 * 172.74579 * 13 12 2 15 15 N 1.47076 * 108.52022 * 53.83033 * 14 13 12 16 16 S 1.65598 * 120.88039 * 128.79258 * 15 14 13 17 17 C 1.81395 * 104.45072 * 270.02409 * 16 15 14 18 18 O 1.42104 * 104.27948 * 26.09379 * 16 15 14 19 19 O 1.42100 * 104.28110 * 153.94867 * 16 15 14 20 20 C 1.47077 * 118.24029 * 308.81478 * 15 14 13 21 21 C 1.46901 * 110.99823 * 294.99910 * 12 2 1 22 22 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 24 24 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.49589 * 292.71228 * 13 12 2 27 27 H 1.09000 * 109.48686 * 52.78514 * 13 12 2 28 28 H 1.09000 * 109.62453 * 294.12063 * 14 13 12 29 29 H 1.09000 * 109.62806 * 173.54333 * 14 13 12 30 30 H 1.09001 * 109.47679 * 59.99918 * 17 16 15 31 31 H 1.09010 * 109.47170 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47243 * 299.99868 * 17 16 15 33 33 H 1.09000 * 109.63133 * 291.47591 * 20 15 14 34 34 H 1.09003 * 109.63058 * 170.89449 * 20 15 14 35 35 H 1.08991 * 109.49594 * 307.21469 * 21 12 2 36 36 H 1.09005 * 109.49119 * 67.27086 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0196 -0.6925 1.1995 13 6 1.5349 -2.0786 1.2420 14 6 2.2092 -2.8166 2.4033 15 7 1.9930 -2.0442 3.6361 16 16 1.3885 -2.7678 4.9975 17 6 -0.4100 -2.5873 4.8454 18 8 1.7656 -4.1316 4.8664 19 8 1.8811 -1.9711 6.0661 20 6 2.3275 -0.6120 3.6277 21 6 1.6486 0.0393 2.4181 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 0.7043 1.1577 -3.4845 26 1 0.4546 -2.0819 1.3870 27 1 1.7778 -2.5776 0.3038 28 1 3.2782 -2.9053 2.2094 29 1 1.7702 -3.8085 2.5109 30 1 -0.7495 -3.0833 3.9361 31 1 -0.8952 -3.0416 5.7094 32 1 -0.6663 -1.5289 4.7992 33 1 3.4079 -0.4887 3.5516 34 1 1.9668 -0.1463 4.5448 35 1 1.9739 1.0761 2.3330 36 1 0.5667 0.0069 2.5466 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053604930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:28 Heat of formation + Delta-G solvation = -78.357899 kcal Electronic energy + Delta-G solvation = -19068.163169 eV Core-core repulsion = 16100.014112 eV Total energy + Delta-G solvation = -2968.149057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99866 -38.20480 -37.02542 -36.54363 -34.22592 -32.01458 -30.64055 -30.26506 -27.32736 -26.62997 -24.56787 -22.74961 -21.00988 -19.58067 -18.60551 -18.16160 -17.28083 -17.09395 -16.86465 -15.90908 -15.57443 -15.53737 -15.39568 -14.49094 -14.45188 -14.12311 -13.97788 -13.71983 -13.45554 -13.34509 -13.16691 -12.91446 -12.76560 -12.63381 -12.57096 -12.36721 -12.16550 -12.03389 -11.96065 -11.78200 -11.30223 -10.84248 -10.46761 -9.96458 -8.75993 -8.08367 -6.18262 -0.67849 1.43004 1.46512 1.56861 1.64821 2.45253 2.95631 3.16875 3.21753 3.39308 3.68091 4.08673 4.11615 4.24394 4.39191 4.43514 4.48336 4.58847 4.76502 4.86822 4.91025 4.94013 5.00709 5.11620 5.15060 5.23224 5.30102 5.54398 5.65938 5.75995 5.84859 6.24601 6.53652 6.80588 6.96873 7.51421 8.97664 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.005350 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.444719 B = 5232.751204 C = 5462.183242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.511 4.511 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.286 1.286 12 N -0.541 5.541 13 C 0.050 3.950 14 C 0.133 3.867 15 N -1.002 6.002 16 S 2.620 3.380 17 C -0.655 4.655 18 O -0.991 6.991 19 O -0.989 6.989 20 C 0.134 3.866 21 C 0.037 3.963 22 H 0.032 0.968 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.259 0.741 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 -5.471 13.123 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.024 0.976 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.212 1.212 12 N -0.265 5.265 13 C -0.080 4.080 14 C 0.007 3.993 15 N -0.840 5.840 16 S 2.718 3.282 17 C -0.809 4.809 18 O -0.982 6.982 19 O -0.980 6.980 20 C 0.009 3.991 21 C -0.093 4.093 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.462 -5.793 13.667 15.047 hybrid contribution -1.172 0.250 -1.552 1.961 sum -3.634 -5.542 12.115 13.809 Atomic orbital electron populations 1.22192 1.00201 0.99216 1.00036 1.19058 0.90081 0.92935 0.87135 0.97571 1.21443 1.30128 1.12537 0.90850 0.92254 1.25645 0.95504 0.95772 1.01737 1.70016 1.37927 1.24402 1.23795 0.85545 0.78003 0.78663 0.79624 1.19142 1.20869 1.21172 1.62072 1.60083 1.02262 1.02066 1.22353 0.96734 0.90251 0.98675 1.21530 1.01659 0.93901 0.82203 1.57677 1.79486 1.18697 1.28111 1.04428 0.78888 0.72669 0.72258 1.30407 1.23968 1.13319 1.13172 1.93550 1.82742 1.35890 1.85980 1.93548 1.79496 1.70742 1.54179 1.21512 1.00959 0.78666 0.98012 1.22497 0.98008 0.98130 0.90622 0.94848 0.95320 0.92337 0.93134 0.94817 0.90631 0.91241 0.87793 0.84224 0.83311 0.83995 0.91029 0.87394 0.90656 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.06 8.29 71.98 0.60 -6.46 16 2 C 0.22 10.20 2.35 44.17 0.10 10.30 16 3 H 0.01 0.34 8.07 -2.39 -0.02 0.32 16 4 C -0.51 -26.69 7.83 25.60 0.20 -26.49 16 5 H 0.06 3.09 6.78 -2.92 -0.02 3.07 16 6 C 0.01 0.63 5.31 84.66 0.45 1.07 16 7 N -0.92 -51.38 11.31 21.45 0.24 -51.14 16 8 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 12 N -0.54 -20.87 4.61 -874.38 -4.03 -24.90 16 13 C 0.05 1.68 4.78 86.38 0.41 2.09 16 14 C 0.13 3.65 6.47 86.35 0.56 4.20 16 15 N -1.00 -25.05 3.26 -512.17 -1.67 -26.72 16 16 S 2.62 57.39 6.06 -56.49 -0.34 57.05 16 17 C -0.66 -8.69 10.99 113.37 1.25 -7.44 16 18 O -0.99 -27.84 16.79 -127.65 -2.14 -29.98 16 19 O -0.99 -27.05 16.79 -127.65 -2.14 -29.19 16 20 C 0.13 3.42 6.47 86.35 0.56 3.98 16 21 C 0.04 1.15 5.14 86.39 0.44 1.59 16 22 H 0.03 1.42 6.56 -2.39 -0.02 1.41 16 23 H 0.03 1.12 6.69 -2.39 -0.02 1.10 16 24 H 0.06 3.00 6.06 -2.38 -0.01 2.99 16 25 H 0.26 13.85 8.31 -92.71 -0.77 13.07 16 26 H 0.03 1.09 6.71 -2.39 -0.02 1.07 16 27 H 0.08 2.86 6.32 -2.39 -0.02 2.85 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.10 2.42 7.19 -2.39 -0.02 2.41 16 30 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 2.23 7.19 -2.39 -0.02 2.22 16 35 H 0.08 2.35 8.05 -2.39 -0.02 2.33 16 36 H 0.04 1.10 6.81 -2.38 -0.02 1.08 16 Total: -1.00 -67.17 292.72 -2.42 -69.59 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.07 Total: 7.88 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.57 Total: -17.14 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -5.46 Total: -102.76 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -4.29 Total: -59.17 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 57.39 SS G_CDS: -0.34 Total: 57.05 kcal Total: -67.17 -2.42 -69.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053604930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.763 kcal (2) G-P(sol) polarization free energy of solvation -67.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds