Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.49768 * 2 1 4 4 C 1.53041 * 109.49586 * 120.10152 * 2 1 3 5 5 C 1.53044 * 109.53514 * 181.31761 * 4 2 1 6 6 C 1.53191 * 109.30868 * 298.62740 * 5 4 2 7 7 N 1.46926 * 108.77481 * 54.64117 * 6 5 4 8 8 S 1.65603 * 120.63246 * 126.36865 * 7 6 5 9 9 O 1.42101 * 106.40131 * 23.55790 * 8 7 6 10 10 O 1.42101 * 106.39961 * 156.48109 * 8 7 6 11 11 N 1.65602 * 107.21633 * 270.01637 * 8 7 6 12 12 C 1.46502 * 119.99491 * 65.00411 * 11 8 7 13 13 C 1.50700 * 109.47225 * 165.00035 * 12 11 8 14 14 H 1.08003 * 119.99745 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00472 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99720 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00226 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46955 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47099 * 120.00087 * 17 15 13 20 20 H 1.48499 * 109.47223 * 240.00222 * 17 15 13 21 21 C 1.46925 * 118.73721 * 306.38380 * 7 6 5 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46998 * 300.06145 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.06436 * 1 2 3 25 25 H 1.09006 * 109.45409 * 301.33034 * 4 2 1 26 26 H 1.08999 * 109.46592 * 61.29299 * 4 2 1 27 27 H 1.09002 * 109.49832 * 178.68151 * 5 4 2 28 28 H 1.08996 * 109.52661 * 58.60012 * 5 4 2 29 29 H 1.09002 * 109.59162 * 294.84911 * 6 5 4 30 30 H 1.09000 * 109.58544 * 174.42273 * 6 5 4 31 31 H 0.96997 * 120.00410 * 244.99457 * 11 8 7 32 32 H 1.09000 * 109.47168 * 284.99465 * 12 11 8 33 33 H 1.08998 * 109.47508 * 44.99703 * 12 11 8 34 34 H 0.97005 * 120.00010 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.59365 * 293.82736 * 21 7 6 36 36 H 1.09003 * 109.70579 * 173.46232 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 3.5709 -0.6954 1.2658 6 6 4.1052 -1.4268 0.0303 7 7 3.5046 -0.8289 -1.1698 8 16 4.4587 -0.2836 -2.4087 9 8 5.6875 -0.9905 -2.3098 10 8 3.6471 -0.2949 -3.5750 11 7 4.8068 1.3051 -2.0966 12 6 5.6109 1.6622 -0.9253 13 6 6.0911 3.0843 -1.0602 14 1 5.8242 3.6639 -1.9316 15 6 6.8709 3.6455 -0.0713 16 7 7.1954 2.9398 0.9899 17 14 7.4666 5.4080 -0.2390 18 1 6.9673 5.9800 -1.5152 19 1 6.9542 6.2140 0.8981 20 1 8.9514 5.4314 -0.2329 21 6 2.0413 -0.7236 -1.2498 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5148 0.8894 24 1 -0.3633 0.5128 -0.8906 25 1 1.6582 -0.2251 2.1388 26 1 1.6967 -1.7577 1.2348 27 1 3.9335 -1.1904 2.1667 28 1 3.9164 0.3382 1.2545 29 1 3.8375 -2.4820 0.0860 30 1 5.1895 -1.3247 -0.0142 31 1 4.4784 1.9991 -2.6894 32 1 5.0036 1.5678 -0.0251 33 1 6.4693 0.9940 -0.8562 34 1 7.7444 3.3345 1.6855 35 1 1.6052 -1.7212 -1.2985 36 1 1.7615 -0.1586 -2.1391 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054157692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -99.680396 kcal Electronic energy + Delta-G solvation = -19105.042709 eV Core-core repulsion = 16135.969039 eV Total energy + Delta-G solvation = -2969.073670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.54004 -36.73162 -35.28740 -34.56799 -33.28849 -32.13074 -31.58889 -26.75930 -26.65502 -24.32959 -22.48738 -21.97131 -20.05691 -18.67816 -17.61801 -17.14574 -15.97163 -15.72277 -14.98172 -14.75545 -14.35297 -14.10160 -13.79072 -13.55016 -13.23454 -12.61312 -12.56491 -12.18094 -12.06405 -11.87578 -11.82340 -11.60664 -11.49977 -11.33064 -10.98342 -10.90319 -10.77903 -10.68296 -10.34505 -10.21631 -10.10212 -9.41830 -8.91762 -8.72412 -8.20681 -6.18974 -4.22922 1.20404 3.23102 3.30925 3.34217 3.45300 4.15371 4.33911 4.73139 4.83398 4.92835 5.08156 5.17874 5.21968 5.32146 5.50040 5.58921 5.65463 5.72605 5.81924 5.88419 5.95054 6.07154 6.12852 6.24762 6.34364 6.42729 6.55911 6.60486 6.85843 7.31902 7.36738 7.79481 7.85613 8.19216 8.81656 9.42084 10.91255 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.007118 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.141196 B = 3932.983790 C = 4467.872804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.107 4.107 5 C -0.140 4.140 6 C 0.124 3.876 7 N -1.007 6.007 8 S 2.784 3.216 9 O -0.983 6.983 10 O -1.001 7.001 11 N -1.116 6.116 12 C 0.250 3.750 13 C -0.529 4.529 14 H 0.065 0.935 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.131 3.869 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.407 0.593 32 H 0.022 0.978 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.065 0.935 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.321 -6.850 0.941 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.099 0.901 4 C -0.145 4.145 5 C -0.178 4.178 6 C -0.001 4.001 7 N -0.845 5.845 8 S 2.792 3.208 9 O -0.967 6.967 10 O -0.985 6.985 11 N -0.879 5.879 12 C 0.126 3.874 13 C -0.568 4.568 14 H 0.083 0.917 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.005 3.995 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.240 0.760 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.827 -7.534 0.482 13.199 hybrid contribution 0.129 1.526 0.213 1.547 sum -10.698 -6.007 0.695 12.289 Atomic orbital electron populations 1.21774 0.94931 1.01649 1.01871 1.21551 0.95336 1.00834 0.95414 0.90119 1.21490 0.95706 1.00055 0.97201 1.21965 0.95581 1.02788 0.97508 1.21367 0.98474 0.96402 0.83896 1.58170 1.15829 1.75772 1.34766 1.01766 0.72997 0.73668 0.72395 1.93577 1.43750 1.72913 1.86438 1.93538 1.70344 1.87530 1.47069 1.55827 1.67438 1.24841 1.39775 1.19018 0.89602 0.97458 0.81287 1.21259 1.32601 0.97062 1.05911 0.91734 1.24962 0.95774 0.98424 0.95025 1.69941 1.37100 1.36798 1.08939 0.86385 0.78599 0.83959 0.78128 1.19659 1.20889 1.20799 1.21358 0.79223 1.00588 0.98298 0.92765 0.92498 0.92546 0.92037 0.92310 0.91061 0.90121 0.91824 0.89014 0.76018 0.95976 0.94820 0.92576 0.91697 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.20 37.16 0.34 -1.05 16 2 C -0.11 -1.35 2.87 -90.49 -0.26 -1.61 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.11 -1.24 5.17 -26.69 -0.14 -1.38 16 5 C -0.14 -1.91 6.08 -26.61 -0.16 -2.08 16 6 C 0.12 1.84 6.38 -3.71 -0.02 1.82 16 7 N -1.01 -15.99 3.35 -113.52 -0.38 -16.37 16 8 S 2.78 53.59 6.14 -107.50 -0.66 52.93 16 9 O -0.98 -21.98 16.32 -57.17 -0.93 -22.91 16 10 O -1.00 -20.21 16.85 -57.17 -0.96 -21.18 16 11 N -1.12 -22.98 6.05 -11.66 -0.07 -23.05 16 12 C 0.25 6.12 6.00 -5.19 -0.03 6.09 16 13 C -0.53 -14.14 9.27 -34.44 -0.32 -14.46 16 14 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.13 1.75 5.66 -3.71 -0.02 1.73 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.33 6.94 -51.93 -0.36 0.97 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.53 7.13 -51.93 -0.37 1.16 16 31 H 0.41 7.79 8.54 -34.48 -0.29 7.49 16 32 H 0.02 0.55 6.94 -51.93 -0.36 0.19 16 33 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.15 7.13 -51.93 -0.37 0.78 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -31.29 302.61 -8.94 -40.23 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.50 Total: 3.70 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.71 Total: -9.39 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.29 Total: -63.68 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.90 Total: -44.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 53.59 SS G_CDS: -0.66 Total: 52.93 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.29 -8.94 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054157692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.446 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds