Wall clock time and date at job start Mon Mar 30 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.49768 * 2 1 4 4 C 1.53041 * 109.49586 * 120.10152 * 2 1 3 5 5 C 1.53044 * 109.53514 * 181.31761 * 4 2 1 6 6 C 1.53191 * 109.30868 * 298.62740 * 5 4 2 7 7 N 1.46926 * 108.77481 * 54.64117 * 6 5 4 8 8 S 1.65603 * 120.63246 * 126.36865 * 7 6 5 9 9 O 1.42101 * 106.40131 * 23.55790 * 8 7 6 10 10 O 1.42101 * 106.39961 * 156.48109 * 8 7 6 11 11 N 1.65602 * 107.21633 * 270.01637 * 8 7 6 12 12 C 1.46502 * 119.99491 * 65.00411 * 11 8 7 13 13 C 1.50700 * 109.47225 * 165.00035 * 12 11 8 14 14 H 1.08003 * 119.99745 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00472 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99720 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00226 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46955 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47099 * 120.00087 * 17 15 13 20 20 H 1.48499 * 109.47223 * 240.00222 * 17 15 13 21 21 C 1.46925 * 118.73721 * 306.38380 * 7 6 5 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46998 * 300.06145 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.06436 * 1 2 3 25 25 H 1.09006 * 109.45409 * 301.33034 * 4 2 1 26 26 H 1.08999 * 109.46592 * 61.29299 * 4 2 1 27 27 H 1.09002 * 109.49832 * 178.68151 * 5 4 2 28 28 H 1.08996 * 109.52661 * 58.60012 * 5 4 2 29 29 H 1.09002 * 109.59162 * 294.84911 * 6 5 4 30 30 H 1.09000 * 109.58544 * 174.42273 * 6 5 4 31 31 H 0.96997 * 120.00410 * 244.99457 * 11 8 7 32 32 H 1.09000 * 109.47168 * 284.99465 * 12 11 8 33 33 H 1.08998 * 109.47508 * 44.99703 * 12 11 8 34 34 H 0.97005 * 120.00010 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.59365 * 293.82736 * 21 7 6 36 36 H 1.09003 * 109.70579 * 173.46232 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 3.5709 -0.6954 1.2658 6 6 4.1052 -1.4268 0.0303 7 7 3.5046 -0.8289 -1.1698 8 16 4.4587 -0.2836 -2.4087 9 8 5.6875 -0.9905 -2.3098 10 8 3.6471 -0.2949 -3.5750 11 7 4.8068 1.3051 -2.0966 12 6 5.6109 1.6622 -0.9253 13 6 6.0911 3.0843 -1.0602 14 1 5.8242 3.6639 -1.9316 15 6 6.8709 3.6455 -0.0713 16 7 7.1954 2.9398 0.9899 17 14 7.4666 5.4080 -0.2390 18 1 6.9673 5.9800 -1.5152 19 1 6.9542 6.2140 0.8981 20 1 8.9514 5.4314 -0.2329 21 6 2.0413 -0.7236 -1.2498 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5148 0.8894 24 1 -0.3633 0.5128 -0.8906 25 1 1.6582 -0.2251 2.1388 26 1 1.6967 -1.7577 1.2348 27 1 3.9335 -1.1904 2.1667 28 1 3.9164 0.3382 1.2545 29 1 3.8375 -2.4820 0.0860 30 1 5.1895 -1.3247 -0.0142 31 1 4.4784 1.9991 -2.6894 32 1 5.0036 1.5678 -0.0251 33 1 6.4693 0.9940 -0.8562 34 1 7.7444 3.3345 1.6855 35 1 1.6052 -1.7212 -1.2985 36 1 1.7615 -0.1586 -2.1391 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054157692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:48 Heat of formation + Delta-G solvation = -122.635836 kcal Electronic energy + Delta-G solvation = -19106.038132 eV Core-core repulsion = 16135.969039 eV Total energy + Delta-G solvation = -2970.069093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64029 -38.38548 -36.96086 -36.45528 -34.37224 -34.12408 -32.69906 -28.73042 -27.63246 -25.47279 -24.48955 -23.05362 -21.21820 -20.11997 -19.29778 -18.70703 -17.79004 -17.32491 -16.65142 -16.02081 -15.73513 -15.19356 -15.08096 -14.94140 -14.62006 -14.42385 -14.10980 -13.62037 -13.59421 -13.27526 -13.21283 -13.00665 -12.85366 -12.80309 -12.57739 -12.53888 -12.13319 -11.96986 -11.72433 -11.42702 -11.39967 -11.20973 -10.85779 -10.11744 -9.95526 -8.26127 -6.38000 -0.35312 1.41877 1.43375 1.55507 1.96130 2.39418 2.58238 3.08321 3.36217 3.66882 3.94809 3.98424 4.14874 4.22504 4.44467 4.54694 4.65379 4.67282 4.80912 4.86319 4.89958 4.96072 5.08748 5.18484 5.21018 5.31904 5.33328 5.37860 5.47980 5.58730 5.66296 5.74936 6.00219 6.30548 6.76041 7.31510 8.84736 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.007118 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.141196 B = 3932.983790 C = 4467.872804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.054 0.946 4 C -0.102 4.102 5 C -0.137 4.137 6 C 0.119 3.881 7 N -1.002 6.002 8 S 2.799 3.201 9 O -1.017 7.017 10 O -1.007 7.007 11 N -1.117 6.117 12 C 0.267 3.733 13 C -0.552 4.552 14 H 0.069 0.931 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.280 1.280 21 C 0.122 3.878 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.413 0.587 32 H 0.017 0.983 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 -6.923 1.246 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.073 0.927 4 C -0.139 4.139 5 C -0.176 4.176 6 C -0.006 4.006 7 N -0.843 5.843 8 S 2.808 3.192 9 O -1.000 7.000 10 O -0.991 6.991 11 N -0.878 5.878 12 C 0.142 3.858 13 C -0.591 4.591 14 H 0.088 0.912 15 C -0.190 4.190 16 N -0.560 5.560 17 Si 0.795 3.205 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.206 1.206 21 C -0.002 4.002 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.035 0.965 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.444 -7.600 0.765 14.601 hybrid contribution 0.586 1.480 0.127 1.597 sum -11.858 -6.121 0.892 13.374 Atomic orbital electron populations 1.21732 0.92569 1.02957 1.02372 1.21538 0.97223 0.99251 0.95098 0.92698 1.21486 0.93640 1.01521 0.97271 1.21936 0.97516 1.00513 0.97645 1.21532 0.97102 0.98254 0.83750 1.57926 1.16888 1.75219 1.34281 1.01147 0.72478 0.72909 0.72707 1.93529 1.45998 1.73402 1.87111 1.93521 1.70226 1.87453 1.47910 1.55709 1.67393 1.25824 1.38906 1.18576 0.88791 0.96066 0.82378 1.21652 1.33047 0.98097 1.06296 0.91243 1.25852 0.95787 1.02734 0.94620 1.70052 1.37632 1.38675 1.09668 0.85320 0.77913 0.78760 0.78516 1.18805 1.20045 1.20560 1.21688 0.77262 1.02373 0.98897 0.91007 0.91829 0.92323 0.91103 0.89926 0.89367 0.93765 0.88603 0.91668 0.75326 0.96535 0.97979 0.92266 0.88889 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.20 71.98 0.66 -1.62 16 2 C -0.11 -2.50 2.87 -10.71 -0.03 -2.53 16 3 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.10 -2.13 5.17 30.62 0.16 -1.97 16 5 C -0.14 -3.68 6.08 30.67 0.19 -3.49 16 6 C 0.12 3.46 6.38 86.36 0.55 4.01 16 7 N -1.00 -31.28 3.35 -513.07 -1.72 -33.00 16 8 S 2.80 109.06 6.14 -56.49 -0.35 108.71 16 9 O -1.02 -46.67 16.32 -128.00 -2.09 -48.76 16 10 O -1.01 -40.26 16.85 -128.00 -2.16 -42.41 16 11 N -1.12 -47.17 6.05 -190.79 -1.15 -48.32 16 12 C 0.27 13.55 6.00 85.63 0.51 14.06 16 13 C -0.55 -29.98 9.27 25.60 0.24 -29.74 16 14 H 0.07 3.61 7.65 -2.91 -0.02 3.59 16 15 C 0.01 0.56 5.46 84.65 0.46 1.03 16 16 N -0.92 -52.68 13.29 21.44 0.28 -52.39 16 17 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.12 3.03 5.66 86.36 0.49 3.52 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.50 6.94 -2.39 -0.02 1.49 16 29 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 2.25 7.13 -2.39 -0.02 2.23 16 31 H 0.41 16.07 8.54 -96.75 -0.83 15.25 16 32 H 0.02 0.87 6.94 -2.39 -0.02 0.85 16 33 H 0.00 0.13 7.75 -2.39 -0.02 0.11 16 34 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 2.10 7.13 -2.39 -0.02 2.08 16 Total: -1.00 -67.20 302.61 -1.68 -68.89 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.24 Total: 19.49 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 3.23 Total: -16.73 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -2.59 Total: -133.71 kcal Atomic # 8 Polarization: -86.93 SS G_CDS: -4.25 Total: -91.17 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 109.06 SS G_CDS: -0.35 Total: 108.71 kcal Total: -67.20 -1.68 -68.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054157692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.749 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds