Wall clock time and date at job start Mon Mar 30 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99865 * 2 1 4 4 C 1.46904 * 110.99828 * 123.95162 * 2 1 3 5 5 C 1.53001 * 109.46863 * 163.37846 * 4 2 1 6 6 H 1.08994 * 109.87784 * 57.99446 * 5 4 2 7 7 C 1.54329 * 109.88210 * 179.17525 * 5 4 2 8 8 C 1.55447 * 102.97026 * 141.60651 * 7 5 4 9 9 C 1.54909 * 101.45107 * 324.51568 * 8 7 5 10 10 N 1.47026 * 109.87969 * 296.97686 * 5 4 2 11 11 S 1.65605 * 125.64612 * 61.67090 * 10 5 4 12 12 O 1.42095 * 106.40378 * 26.76772 * 11 10 5 13 13 O 1.42096 * 106.40230 * 159.69252 * 11 10 5 14 14 C 1.76200 * 107.21338 * 273.23162 * 11 10 5 15 15 H 1.08005 * 120.00422 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99786 * 180.02562 * 14 11 10 17 17 N 1.31509 * 120.00095 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99796 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46821 * 90.00129 * 18 16 14 20 20 H 1.48497 * 109.47075 * 209.99768 * 18 16 14 21 21 H 1.48498 * 109.47347 * 330.00146 * 18 16 14 22 22 H 1.09008 * 109.46736 * 296.04529 * 1 2 3 23 23 H 1.08997 * 109.46997 * 56.04524 * 1 2 3 24 24 H 1.08996 * 109.46771 * 176.05085 * 1 2 3 25 25 H 1.09002 * 109.46766 * 178.31435 * 3 2 1 26 26 H 1.09000 * 109.47352 * 298.31632 * 3 2 1 27 27 H 1.09000 * 109.47271 * 58.31708 * 3 2 1 28 28 H 1.08999 * 109.47175 * 43.37778 * 4 2 1 29 29 H 1.08996 * 109.47315 * 283.37309 * 4 2 1 30 30 H 1.09001 * 110.71633 * 259.97126 * 7 5 4 31 31 H 1.08994 * 110.71875 * 23.24137 * 7 5 4 32 32 H 1.08996 * 111.11825 * 206.46535 * 8 7 5 33 33 H 1.09000 * 111.00923 * 82.52237 * 8 7 5 34 34 H 1.08995 * 110.36897 * 278.11353 * 9 8 7 35 35 H 1.09005 * 110.36608 * 155.89769 * 9 8 7 36 36 H 0.96994 * 120.00171 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.4686 -1.0975 0.8912 6 1 4.0360 -0.1783 0.7457 7 6 4.0372 -1.8848 2.0907 8 6 4.9725 -2.9253 1.4133 9 6 4.1899 -3.2427 0.1146 10 7 3.5961 -1.9570 -0.2948 11 16 3.1475 -1.5481 -1.8356 12 8 3.2339 -0.1321 -1.9164 13 8 3.8560 -2.4209 -2.7048 14 6 1.4411 -1.9530 -2.0067 15 1 0.9029 -2.3858 -1.1764 16 6 0.7933 -1.7183 -3.2010 17 7 1.4488 -1.1918 -4.2123 18 14 -1.0155 -2.1481 -3.3826 19 1 -1.8437 -0.9799 -2.9895 20 1 -1.3003 -2.5036 -4.7960 21 1 -1.3403 -3.3024 -2.5067 22 1 -0.3633 0.4513 0.9234 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0846 1.3425 0.0302 26 1 1.6706 1.8854 -0.9047 27 1 1.6217 1.9041 0.8745 28 1 1.4283 -1.6904 1.2469 29 1 1.9037 -0.1737 2.0481 30 1 4.6049 -1.2274 2.7492 31 1 3.2377 -2.3840 2.6381 32 1 5.0814 -3.8164 2.0314 33 1 5.9447 -2.4877 1.1866 34 1 3.4079 -3.9758 0.3124 35 1 4.8673 -3.6103 -0.6562 36 1 0.9932 -1.0270 -5.0525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061646109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:54 Heat of formation + Delta-G solvation = -96.587234 kcal Electronic energy + Delta-G solvation = -20066.513056 eV Core-core repulsion = 17097.573515 eV Total energy + Delta-G solvation = -2968.939541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82073 -37.60320 -36.81225 -35.75320 -34.90028 -31.42893 -31.14591 -28.46070 -27.75111 -26.59489 -23.40338 -21.92524 -21.67739 -20.25062 -18.97127 -18.04358 -17.09248 -16.81474 -16.15306 -15.85652 -15.63931 -15.44245 -15.14448 -14.31951 -14.09179 -13.91288 -13.65101 -13.49855 -13.12376 -13.00865 -12.80801 -12.70240 -12.46632 -12.27742 -12.26017 -12.12566 -11.96981 -11.89342 -11.72554 -11.59475 -11.37740 -11.06129 -10.63435 -9.59978 -8.81678 -8.48541 -7.04801 0.63815 1.36362 1.37271 1.49971 2.31353 2.81590 3.08613 3.37398 3.80385 3.96469 3.99620 4.24333 4.35627 4.43505 4.48877 4.57456 4.61939 4.74453 4.79560 4.81211 4.91099 4.94983 5.03474 5.10358 5.18231 5.19946 5.27482 5.37771 5.42048 5.50940 5.66709 6.13504 6.22264 6.45996 6.50389 7.05892 8.45253 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.010939 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.316975 B = 2559.026073 C = 3053.933512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.555 5.555 3 C 0.056 3.944 4 C 0.037 3.963 5 C 0.148 3.852 6 H 0.058 0.942 7 C -0.110 4.110 8 C -0.118 4.118 9 C 0.103 3.897 10 N -1.015 6.015 11 S 2.742 3.258 12 O -1.013 7.013 13 O -1.072 7.072 14 C -0.969 4.969 15 H 0.108 0.892 16 C 0.078 3.922 17 N -0.909 5.909 18 Si 0.968 3.032 19 H -0.255 1.255 20 H -0.277 1.277 21 H -0.251 1.251 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -0.959 15.672 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.279 5.279 3 C -0.092 4.092 4 C -0.092 4.092 5 C 0.041 3.959 6 H 0.076 0.924 7 C -0.150 4.150 8 C -0.157 4.157 9 C -0.023 4.023 10 N -0.853 5.853 11 S 2.846 3.154 12 O -1.003 7.003 13 O -1.062 7.062 14 C -1.103 5.103 15 H 0.126 0.874 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.789 3.211 19 H -0.179 1.179 20 H -0.202 1.202 21 H -0.174 1.174 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.594 -0.715 14.328 14.358 hybrid contribution -1.598 0.169 -0.162 1.615 sum -1.004 -0.545 14.166 14.212 Atomic orbital electron populations 1.22139 0.87083 1.01635 0.99319 1.61648 1.08430 1.14779 1.43019 1.22045 1.00187 0.88227 0.98731 1.22739 0.95720 0.98672 0.92021 1.21519 0.95348 0.93443 0.85601 0.92427 1.22709 0.99550 0.97615 0.95091 1.22809 0.97918 1.00499 0.94429 1.22129 0.96684 0.85595 0.97847 1.58701 1.78388 1.24047 1.24140 0.99180 0.75712 0.71790 0.68747 1.93258 1.89133 1.32769 1.85108 1.93267 1.77411 1.70021 1.65550 1.30542 1.21038 1.53763 1.04998 0.87379 1.25642 1.04552 0.89752 0.93261 1.70022 1.40301 1.39354 1.04613 0.85463 0.77412 0.80039 0.78203 1.17909 1.20238 1.17435 0.94410 0.93742 0.92023 0.92321 0.94249 0.94890 0.90284 0.91559 0.88078 0.88817 0.87146 0.91004 0.91506 0.92928 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.63 8.70 127.69 1.11 2.74 16 2 N -0.55 -21.52 1.20 -948.83 -1.14 -22.66 16 3 C 0.06 2.09 7.87 127.69 1.01 3.10 16 4 C 0.04 1.15 4.48 86.30 0.39 1.54 16 5 C 0.15 4.71 2.98 45.34 0.14 4.85 16 6 H 0.06 1.97 6.65 -2.39 -0.02 1.95 16 7 C -0.11 -2.29 6.48 31.89 0.21 -2.08 16 8 C -0.12 -2.61 7.11 32.09 0.23 -2.38 16 9 C 0.10 3.44 7.07 86.85 0.61 4.05 16 10 N -1.01 -41.71 3.40 -484.26 -1.65 -43.36 16 11 S 2.74 151.66 4.44 -56.49 -0.25 151.40 16 12 O -1.01 -59.41 14.19 -128.00 -1.82 -61.23 16 13 O -1.07 -68.11 17.30 -128.00 -2.21 -70.32 16 14 C -0.97 -52.86 7.24 67.74 0.49 -52.37 16 15 H 0.11 5.41 6.96 -2.91 -0.02 5.39 16 16 C 0.08 4.37 5.46 84.66 0.46 4.83 16 17 N -0.91 -55.81 13.19 21.45 0.28 -55.52 16 18 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 19 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 22 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.18 7.22 -2.39 -0.02 2.16 16 25 H 0.06 2.27 6.02 -2.39 -0.01 2.26 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 2.35 7.94 -2.39 -0.02 2.33 16 29 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.59 7.85 -2.39 -0.02 1.57 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.94 7.77 -2.38 -0.02 1.92 16 36 H 0.29 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -77.63 293.88 0.93 -76.70 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.05 Total: 16.30 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 4.64 Total: -35.73 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -2.51 Total: -121.55 kcal Atomic # 8 Polarization: -127.52 SS G_CDS: -4.03 Total: -131.55 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 151.66 SS G_CDS: -0.25 Total: 151.40 kcal Total: -77.63 0.93 -76.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061646109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.891 kcal (2) G-P(sol) polarization free energy of solvation -77.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds