Wall clock time and date at job start Mon Mar 30 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46491 * 120.00295 * 2 1 4 4 C 1.53003 * 109.47035 * 84.99939 * 3 2 1 5 5 H 1.08999 * 110.64445 * 51.85162 * 4 3 2 6 6 C 1.54594 * 110.72619 * 175.00065 * 4 3 2 7 7 C 1.53991 * 105.14285 * 140.49275 * 6 4 3 8 8 N 1.47905 * 107.22505 * 1.12969 * 7 6 4 9 9 C 1.46897 * 111.00050 * 214.25344 * 8 7 6 10 10 C 1.48813 * 105.67450 * 334.90354 * 8 7 6 11 11 S 1.65602 * 119.99669 * 180.02562 * 2 1 3 12 12 O 1.42101 * 106.40371 * 23.54031 * 11 2 1 13 13 O 1.42096 * 106.40045 * 156.46147 * 11 2 1 14 14 C 1.76201 * 107.21833 * 269.99833 * 11 2 1 15 15 H 1.07999 * 119.99929 * 0.02562 * 14 11 2 16 16 C 1.37876 * 119.99983 * 180.02562 * 14 11 2 17 17 N 1.31519 * 120.00116 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99986 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47254 * 60.00004 * 18 16 14 20 20 H 1.48498 * 109.47032 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46823 * 299.99765 * 18 16 14 22 22 H 1.08994 * 109.47267 * 89.99744 * 1 2 3 23 23 H 1.09006 * 109.47322 * 210.00038 * 1 2 3 24 24 H 1.09004 * 109.47084 * 329.99843 * 1 2 3 25 25 H 1.09005 * 109.47142 * 325.00082 * 3 2 1 26 26 H 1.09000 * 109.47332 * 204.99955 * 3 2 1 27 27 H 1.09005 * 110.30718 * 21.58080 * 6 4 3 28 28 H 1.08997 * 110.30992 * 259.41600 * 6 4 3 29 29 H 1.09002 * 109.91707 * 120.58029 * 7 6 4 30 30 H 1.09002 * 109.91668 * 241.67819 * 7 6 4 31 31 H 1.09003 * 109.47065 * 59.87544 * 9 8 7 32 32 H 1.08999 * 109.47271 * 179.87278 * 9 8 7 33 33 H 1.09003 * 109.47401 * 299.87547 * 9 8 7 34 34 H 1.08998 * 110.51915 * 280.54171 * 10 8 7 35 35 H 1.09004 * 110.69711 * 157.49494 * 10 8 7 36 36 H 0.96996 * 120.00081 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7731 1.4370 5 1 2.7595 0.9950 2.0771 6 6 3.2199 3.0459 1.4836 7 6 2.5473 3.9595 2.5249 8 7 1.3752 3.2300 3.0555 9 6 0.2766 4.1542 3.3667 10 6 0.9835 2.2686 1.9893 11 16 2.2929 -1.4342 -0.0006 12 8 1.4113 -2.4063 -0.5455 13 8 3.5759 -1.1566 -0.5449 14 6 2.5538 -1.8866 1.6822 15 1 2.1867 -1.2519 2.4751 16 6 3.2265 -3.0510 1.9867 17 7 3.6730 -3.8242 1.0211 18 14 3.5023 -3.5310 3.7708 19 1 2.1909 -3.6862 4.4501 20 1 4.2454 -4.8154 3.8286 21 1 4.2905 -2.4727 4.4519 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6502 2.0042 -0.5895 26 1 3.1858 1.1176 -0.4343 27 1 3.2343 3.5312 0.5077 28 1 4.2334 2.7962 1.7977 29 1 3.2454 4.1784 3.3329 30 1 2.2245 4.8869 2.0518 31 1 -0.0198 4.6842 2.4615 32 1 -0.5733 3.5915 3.7529 33 1 0.6076 4.8727 4.1166 34 1 0.4130 2.7738 1.2100 35 1 0.4135 1.4395 2.4086 36 1 4.1460 -4.6435 1.2353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070822871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:44 Heat of formation + Delta-G solvation = -86.123795 kcal Electronic energy + Delta-G solvation = -19054.301662 eV Core-core repulsion = 16085.815850 eV Total energy + Delta-G solvation = -2968.485812 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01185 -35.59801 -35.24544 -33.92489 -33.04500 -32.10418 -28.98974 -27.23866 -26.09296 -25.24397 -23.04777 -20.98468 -20.08832 -18.55346 -17.20506 -16.28559 -16.08648 -15.44996 -14.98365 -14.80715 -14.23521 -14.09623 -13.62440 -13.26280 -13.11901 -12.86002 -12.17659 -12.04696 -11.94434 -11.90565 -11.40870 -11.32848 -11.20198 -11.16253 -11.05145 -10.60532 -10.59204 -10.30370 -10.25233 -10.09650 -9.99300 -9.19719 -8.88573 -8.40368 -8.15202 -6.65630 -5.27488 2.30427 3.12383 3.16180 3.22744 4.07183 4.10035 4.54073 4.68169 4.79798 4.86014 5.07808 5.31455 5.36177 5.39482 5.61152 5.66469 5.70827 5.75258 5.79015 5.83474 5.89523 5.97942 6.06834 6.15768 6.19653 6.27809 6.34935 6.41141 6.69490 6.79924 6.94456 7.08507 7.37056 7.62086 8.02411 8.93467 10.27932 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.007701 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.042841 B = 3635.130895 C = 4266.956782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.016 6.016 3 C 0.133 3.867 4 C -0.116 4.116 5 H 0.099 0.901 6 C -0.127 4.127 7 C 0.037 3.963 8 N -0.526 5.526 9 C 0.018 3.982 10 C 0.043 3.957 11 S 2.714 3.286 12 O -1.005 7.005 13 O -1.005 7.005 14 C -1.018 5.018 15 H 0.103 0.897 16 C 0.134 3.866 17 N -0.847 5.847 18 Si 0.918 3.082 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.263 1.263 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 13.806 2.818 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.850 5.850 3 C 0.006 3.994 4 C -0.136 4.136 5 H 0.118 0.882 6 C -0.165 4.165 7 C -0.091 4.091 8 N -0.249 5.249 9 C -0.131 4.131 10 C -0.084 4.084 11 S 2.815 3.185 12 O -0.995 6.995 13 O -0.995 6.995 14 C -1.151 5.151 15 H 0.121 0.879 16 C -0.084 4.084 17 N -0.477 5.477 18 Si 0.742 3.258 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.188 1.188 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.234 12.946 2.420 13.835 hybrid contribution -0.217 0.348 0.921 1.008 sum -4.452 13.294 3.341 14.412 Atomic orbital electron populations 1.21315 0.80331 1.02290 1.00750 1.57878 1.14047 1.21978 1.91112 1.21167 0.97799 0.85814 0.94608 1.22693 0.94762 0.97799 0.98396 0.88243 1.22424 1.00031 0.95496 0.98581 1.22848 0.93420 0.95535 0.97288 1.64782 1.05536 1.15432 1.39194 1.22483 0.94689 0.96014 0.99898 1.23416 0.97349 0.95550 0.92091 1.00541 0.71736 0.69671 0.76586 1.93354 1.67274 1.57907 1.81006 1.93338 1.41023 1.84081 1.81065 1.30597 1.50026 1.16836 1.17645 0.87875 1.24736 0.90131 0.93394 1.00112 1.69892 1.31135 1.12844 1.33860 0.86236 0.79305 0.78228 0.82023 1.18866 1.20209 1.18774 0.93846 0.91028 0.92328 0.91727 0.88845 0.91348 0.90500 0.90620 0.94177 0.95735 0.91393 0.91667 0.93933 0.89619 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 10.04 59.85 0.60 2.26 16 2 N -1.02 -20.36 3.17 -121.76 -0.39 -20.74 16 3 C 0.13 2.25 5.10 -4.04 -0.02 2.23 16 4 C -0.12 -1.82 3.28 -88.76 -0.29 -2.11 16 5 H 0.10 1.85 7.96 -51.93 -0.41 1.44 16 6 C -0.13 -1.64 6.51 -25.38 -0.17 -1.80 16 7 C 0.04 0.44 6.69 -2.75 -0.02 0.43 16 8 N -0.53 -7.03 5.56 -238.47 -1.33 -8.36 16 9 C 0.02 0.19 9.41 60.06 0.57 0.76 16 10 C 0.04 0.61 4.39 -1.74 -0.01 0.60 16 11 S 2.71 72.29 4.93 -107.50 -0.53 71.76 16 12 O -1.01 -29.57 17.09 -57.17 -0.98 -30.55 16 13 O -1.00 -29.17 16.57 -57.17 -0.95 -30.12 16 14 C -1.02 -27.93 9.75 30.60 0.30 -27.64 16 15 H 0.10 2.60 7.63 -52.49 -0.40 2.20 16 16 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 17 N -0.85 -25.09 13.19 55.43 0.73 -24.36 16 18 Si 0.92 20.82 29.54 -169.99 -5.02 15.79 16 19 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.26 -5.79 7.11 56.52 0.40 -5.38 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.26 7.79 -51.93 -0.40 0.85 16 24 H 0.06 0.78 5.70 -51.93 -0.30 0.49 16 25 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 26 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 27 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.42 7.73 -51.93 -0.40 0.02 16 31 H 0.02 0.24 8.01 -51.93 -0.42 -0.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.54 7.43 -51.93 -0.39 0.15 16 35 H 0.09 1.27 7.66 -51.93 -0.40 0.87 16 36 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -34.26 303.67 -8.56 -42.82 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.54 Total: 0.79 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 0.86 Total: -21.62 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.98 Total: -53.45 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -1.92 Total: -60.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 72.29 SS G_CDS: -0.53 Total: 71.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.26 -8.56 -42.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.304 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds