Wall clock time and date at job start Mon Mar 30 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46491 * 120.00295 * 2 1 4 4 C 1.53003 * 109.47035 * 84.99939 * 3 2 1 5 5 H 1.08999 * 110.64445 * 51.85162 * 4 3 2 6 6 C 1.54594 * 110.72619 * 175.00065 * 4 3 2 7 7 C 1.53991 * 105.14285 * 140.49275 * 6 4 3 8 8 N 1.47905 * 107.22505 * 1.12969 * 7 6 4 9 9 C 1.46897 * 111.00050 * 214.25344 * 8 7 6 10 10 C 1.48813 * 105.67450 * 334.90354 * 8 7 6 11 11 S 1.65602 * 119.99669 * 180.02562 * 2 1 3 12 12 O 1.42101 * 106.40371 * 23.54031 * 11 2 1 13 13 O 1.42096 * 106.40045 * 156.46147 * 11 2 1 14 14 C 1.76201 * 107.21833 * 269.99833 * 11 2 1 15 15 H 1.07999 * 119.99929 * 0.02562 * 14 11 2 16 16 C 1.37876 * 119.99983 * 180.02562 * 14 11 2 17 17 N 1.31519 * 120.00116 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99986 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47254 * 60.00004 * 18 16 14 20 20 H 1.48498 * 109.47032 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46823 * 299.99765 * 18 16 14 22 22 H 1.08994 * 109.47267 * 89.99744 * 1 2 3 23 23 H 1.09006 * 109.47322 * 210.00038 * 1 2 3 24 24 H 1.09004 * 109.47084 * 329.99843 * 1 2 3 25 25 H 1.09005 * 109.47142 * 325.00082 * 3 2 1 26 26 H 1.09000 * 109.47332 * 204.99955 * 3 2 1 27 27 H 1.09005 * 110.30718 * 21.58080 * 6 4 3 28 28 H 1.08997 * 110.30992 * 259.41600 * 6 4 3 29 29 H 1.09002 * 109.91707 * 120.58029 * 7 6 4 30 30 H 1.09002 * 109.91668 * 241.67819 * 7 6 4 31 31 H 1.09003 * 109.47065 * 59.87544 * 9 8 7 32 32 H 1.08999 * 109.47271 * 179.87278 * 9 8 7 33 33 H 1.09003 * 109.47401 * 299.87547 * 9 8 7 34 34 H 1.08998 * 110.51915 * 280.54171 * 10 8 7 35 35 H 1.09004 * 110.69711 * 157.49494 * 10 8 7 36 36 H 0.96996 * 120.00081 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7731 1.4370 5 1 2.7595 0.9950 2.0771 6 6 3.2199 3.0459 1.4836 7 6 2.5473 3.9595 2.5249 8 7 1.3752 3.2300 3.0555 9 6 0.2766 4.1542 3.3667 10 6 0.9835 2.2686 1.9893 11 16 2.2929 -1.4342 -0.0006 12 8 1.4113 -2.4063 -0.5455 13 8 3.5759 -1.1566 -0.5449 14 6 2.5538 -1.8866 1.6822 15 1 2.1867 -1.2519 2.4751 16 6 3.2265 -3.0510 1.9867 17 7 3.6730 -3.8242 1.0211 18 14 3.5023 -3.5310 3.7708 19 1 2.1909 -3.6862 4.4501 20 1 4.2454 -4.8154 3.8286 21 1 4.2905 -2.4727 4.4519 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6502 2.0042 -0.5895 26 1 3.1858 1.1176 -0.4343 27 1 3.2343 3.5312 0.5077 28 1 4.2334 2.7962 1.7977 29 1 3.2454 4.1784 3.3329 30 1 2.2245 4.8869 2.0518 31 1 -0.0198 4.6842 2.4615 32 1 -0.5733 3.5915 3.7529 33 1 0.6076 4.8727 4.1166 34 1 0.4130 2.7738 1.2100 35 1 0.4135 1.4395 2.4086 36 1 4.1460 -4.6435 1.2353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070822871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:44 Heat of formation + Delta-G solvation = -114.035623 kcal Electronic energy + Delta-G solvation = -19055.512009 eV Core-core repulsion = 16085.815850 eV Total energy + Delta-G solvation = -2969.696159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09067 -37.45418 -36.98309 -36.12931 -35.15725 -33.23992 -30.07417 -28.43698 -28.24483 -26.34044 -24.39979 -21.99582 -21.33924 -20.50282 -19.09284 -18.20418 -17.40900 -17.01809 -16.56289 -16.27549 -15.86832 -15.31476 -15.05767 -14.67093 -14.46693 -13.99640 -13.92379 -13.68873 -13.27834 -13.17215 -13.08468 -13.00579 -12.51464 -12.43656 -12.42131 -12.33726 -12.28606 -12.15994 -11.84606 -11.64230 -11.33841 -11.23338 -10.95188 -9.78061 -9.30184 -8.73433 -7.46190 0.32576 1.32806 1.34810 1.47625 2.20354 2.58473 2.83933 3.13495 3.70802 3.77514 3.80376 4.02144 4.17078 4.26253 4.35898 4.47465 4.58318 4.58915 4.62838 4.70031 4.78649 4.85312 4.86541 4.95867 4.99491 5.03727 5.06205 5.18719 5.28047 5.36746 5.42586 5.92676 5.96565 6.02040 6.18842 6.79880 8.21543 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.007701 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.042841 B = 3635.130895 C = 4266.956782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.010 6.010 3 C 0.128 3.872 4 C -0.119 4.119 5 H 0.061 0.939 6 C -0.125 4.125 7 C 0.040 3.960 8 N -0.548 5.548 9 C 0.018 3.982 10 C 0.049 3.951 11 S 2.717 3.283 12 O -1.043 7.043 13 O -1.040 7.040 14 C -1.035 5.035 15 H 0.116 0.884 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.984 3.016 19 H -0.251 1.251 20 H -0.263 1.263 21 H -0.252 1.252 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 15.941 4.127 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.848 5.848 3 C 0.003 3.997 4 C -0.140 4.140 5 H 0.080 0.920 6 C -0.163 4.163 7 C -0.087 4.087 8 N -0.272 5.272 9 C -0.130 4.130 10 C -0.079 4.079 11 S 2.819 3.181 12 O -1.033 7.033 13 O -1.031 7.031 14 C -1.168 5.168 15 H 0.135 0.865 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.802 3.198 19 H -0.174 1.174 20 H -0.187 1.187 21 H -0.176 1.176 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.201 15.093 3.717 16.391 hybrid contribution 0.039 -0.217 0.472 0.521 sum -5.161 14.876 4.189 16.294 Atomic orbital electron populations 1.21600 0.78001 1.03575 1.02221 1.57351 1.15401 1.21049 1.91025 1.21432 0.97150 0.84982 0.96172 1.22579 0.96714 0.98038 0.96707 0.92044 1.22439 0.99229 0.94442 1.00212 1.22855 0.92985 0.95789 0.97119 1.64742 1.06823 1.16504 1.39165 1.22533 0.93917 0.95802 1.00775 1.23310 0.96066 0.95691 0.92812 1.00050 0.71163 0.70582 0.76348 1.93292 1.67877 1.60525 1.81640 1.93279 1.43150 1.84976 1.81654 1.30937 1.49984 1.17349 1.18533 0.86548 1.25956 0.89493 0.93265 1.05310 1.69985 1.32420 1.13802 1.36515 0.85249 0.80078 0.78698 0.75733 1.17439 1.18677 1.17589 0.92315 0.92464 0.88354 0.87605 0.90839 0.89305 0.91188 0.90375 0.92053 0.94487 0.91248 0.90574 0.91799 0.90890 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 10.04 127.77 1.28 4.19 16 2 N -1.01 -40.11 3.17 -539.12 -1.71 -41.81 16 3 C 0.13 4.18 5.10 86.38 0.44 4.62 16 4 C -0.12 -3.62 3.28 -9.59 -0.03 -3.65 16 5 H 0.06 2.32 7.96 -2.39 -0.02 2.30 16 6 C -0.12 -2.97 6.51 31.47 0.20 -2.77 16 7 C 0.04 0.84 6.69 86.44 0.58 1.42 16 8 N -0.55 -13.18 5.56 -908.37 -5.05 -18.23 16 9 C 0.02 0.32 9.41 127.69 1.20 1.52 16 10 C 0.05 1.24 4.39 86.59 0.38 1.62 16 11 S 2.72 148.66 4.93 -56.49 -0.28 148.38 16 12 O -1.04 -63.34 17.09 -128.00 -2.19 -65.52 16 13 O -1.04 -62.67 16.57 -128.00 -2.12 -64.79 16 14 C -1.03 -57.87 9.75 67.73 0.66 -57.21 16 15 H 0.12 5.96 7.63 -2.91 -0.02 5.94 16 16 C 0.07 4.10 5.46 84.65 0.46 4.57 16 17 N -0.90 -54.38 13.19 21.45 0.28 -54.10 16 18 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 19 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.99 7.79 -2.38 -0.02 1.97 16 24 H 0.10 2.33 5.70 -2.38 -0.01 2.32 16 25 H 0.11 2.58 7.97 -2.38 -0.02 2.57 16 26 H 0.07 2.69 6.91 -2.39 -0.02 2.67 16 27 H 0.09 1.74 7.85 -2.38 -0.02 1.73 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.04 7.73 -2.39 -0.02 1.02 16 31 H 0.04 0.57 8.01 -2.39 -0.02 0.55 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.35 7.43 -2.39 -0.02 1.33 16 35 H 0.07 2.03 7.66 -2.38 -0.02 2.01 16 36 H 0.30 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -76.24 303.67 -2.81 -79.04 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.05 Total: 18.37 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 5.18 Total: -45.69 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -6.48 Total: -114.14 kcal Atomic # 8 Polarization: -126.00 SS G_CDS: -4.31 Total: -130.31 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 148.66 SS G_CDS: -0.28 Total: 148.38 kcal Total: -76.24 -2.81 -79.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.993 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds