Wall clock time and date at job start Mon Mar 30 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00284 * 2 1 4 4 C 1.52999 * 109.46640 * 275.00271 * 3 2 1 5 5 H 1.08996 * 110.64475 * 305.69453 * 4 3 2 6 6 C 1.54597 * 110.72086 * 182.54587 * 4 3 2 7 7 C 1.53990 * 105.14264 * 219.68273 * 6 4 3 8 8 N 1.47900 * 107.05529 * 358.77882 * 7 6 4 9 9 C 1.46904 * 110.99942 * 145.84431 * 8 7 6 10 10 C 1.48723 * 105.94677 * 25.19807 * 8 7 6 11 11 S 1.65601 * 119.99820 * 179.97438 * 2 1 3 12 12 O 1.42101 * 106.40318 * 336.46100 * 11 2 1 13 13 O 1.42100 * 106.40446 * 203.53933 * 11 2 1 14 14 C 1.76202 * 107.21908 * 89.99759 * 11 2 1 15 15 H 1.08005 * 119.99646 * 0.02562 * 14 11 2 16 16 C 1.37875 * 120.00219 * 179.97438 * 14 11 2 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09006 * 109.46892 * 269.99648 * 1 2 3 23 23 H 1.08998 * 109.47525 * 29.99579 * 1 2 3 24 24 H 1.09002 * 109.47129 * 150.00130 * 1 2 3 25 25 H 1.09004 * 109.46736 * 34.99811 * 3 2 1 26 26 H 1.08997 * 109.47022 * 155.00405 * 3 2 1 27 27 H 1.09004 * 110.30848 * 338.60530 * 6 4 3 28 28 H 1.09005 * 110.30980 * 100.76450 * 6 4 3 29 29 H 1.09000 * 109.91808 * 118.12715 * 7 6 4 30 30 H 1.08998 * 109.92101 * 239.42239 * 7 6 4 31 31 H 1.09000 * 109.47201 * 60.12211 * 9 8 7 32 32 H 1.09001 * 109.46985 * 180.12448 * 9 8 7 33 33 H 1.08993 * 109.47003 * 300.12112 * 9 8 7 34 34 H 1.08999 * 110.84278 * 202.57792 * 10 8 7 35 35 H 1.09008 * 110.58361 * 79.38552 * 10 8 7 36 36 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7731 -1.4370 5 1 2.7993 1.0100 -2.0678 6 6 3.1686 3.0800 -1.4768 7 6 2.4720 3.9636 -2.5281 8 7 1.3387 3.1824 -3.0692 9 6 0.2055 4.0574 -3.3983 10 6 0.9704 2.2079 -2.0078 11 16 2.2929 -1.4342 0.0006 12 8 1.4112 -2.4063 0.5455 13 8 3.5759 -1.1567 0.5449 14 6 2.5537 -1.8867 -1.6822 15 1 2.1872 -1.2515 -2.4752 16 6 3.2264 -3.0510 -1.9867 17 7 3.6730 -3.8242 -1.0212 18 14 3.5021 -3.5311 -3.7708 19 1 4.2441 -4.8161 -3.8287 20 1 4.2903 -2.4728 -4.4521 21 1 2.1907 -3.6862 -4.4501 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6501 2.0043 0.5894 26 1 3.1858 1.1176 0.4342 27 1 3.1523 3.5675 -0.5020 28 1 4.1948 2.8705 -1.7787 29 1 2.1037 4.8768 -2.0605 30 1 3.1699 4.2086 -3.3286 31 1 0.5148 4.7861 -4.1476 32 1 -0.6147 3.4571 -3.7920 33 1 -0.1243 4.5782 -2.4994 34 1 0.4422 1.3539 -2.4317 35 1 0.3686 2.6899 -1.2372 36 1 3.5295 -3.5751 -0.0948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070822874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:48 Heat of formation + Delta-G solvation = -88.028607 kcal Electronic energy + Delta-G solvation = -19117.696644 eV Core-core repulsion = 16149.128233 eV Total energy + Delta-G solvation = -2968.568411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.08347 -35.73740 -35.56168 -34.37647 -33.16152 -32.16895 -29.05467 -27.33876 -25.54888 -25.30262 -23.13366 -21.03604 -20.15799 -19.17138 -17.59568 -16.37174 -16.14168 -15.53571 -15.00329 -14.70979 -14.31900 -13.96076 -13.70963 -13.45635 -13.24046 -12.97996 -12.71759 -12.17415 -12.02845 -11.85802 -11.43744 -11.28592 -11.25745 -11.05843 -10.98316 -10.74881 -10.57347 -10.48177 -10.33822 -10.27474 -10.18447 -9.15559 -8.78250 -8.42240 -8.12849 -7.14653 -5.35958 2.09241 3.26120 3.26995 3.48067 4.03295 4.13030 4.33015 4.73330 4.74023 4.80192 5.01414 5.23425 5.31355 5.35605 5.48198 5.56432 5.57563 5.59695 5.69980 5.75706 5.81879 5.90118 5.99328 6.06159 6.07616 6.17057 6.20927 6.26585 6.58552 6.63567 6.90328 7.04241 7.42105 7.64947 8.08720 8.65133 10.22511 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.007773 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.520668 B = 3601.354255 C = 4232.285408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.009 6.009 3 C 0.133 3.867 4 C -0.116 4.116 5 H 0.099 0.901 6 C -0.126 4.126 7 C 0.038 3.962 8 N -0.526 5.526 9 C 0.018 3.982 10 C 0.044 3.956 11 S 2.689 3.311 12 O -1.011 7.011 13 O -1.011 7.011 14 C -1.081 5.081 15 H 0.104 0.896 16 C 0.091 3.909 17 N -0.846 5.846 18 Si 1.078 2.922 19 H -0.272 1.272 20 H -0.275 1.275 21 H -0.276 1.276 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 14.605 -2.890 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.844 5.844 3 C 0.006 3.994 4 C -0.137 4.137 5 H 0.117 0.883 6 C -0.165 4.165 7 C -0.090 4.090 8 N -0.249 5.249 9 C -0.131 4.131 10 C -0.083 4.083 11 S 2.791 3.209 12 O -1.001 7.001 13 O -1.001 7.001 14 C -1.216 5.216 15 H 0.122 0.878 16 C -0.128 4.128 17 N -0.475 5.475 18 Si 0.901 3.099 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.201 1.201 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.205 12.777 -3.462 13.890 hybrid contribution -1.152 1.895 1.008 2.436 sum -5.357 14.672 -2.455 15.811 Atomic orbital electron populations 1.21354 0.80013 1.02500 1.00874 1.57563 1.14089 1.21610 1.91114 1.21198 0.97706 0.85615 0.94875 1.22682 0.95193 0.97708 0.98097 0.88266 1.22422 1.00151 0.95365 0.98568 1.22849 0.93788 0.95227 0.97150 1.64722 1.06458 1.14990 1.38777 1.22486 0.94098 0.96636 0.99881 1.23399 0.97134 0.95671 0.92135 1.01127 0.72065 0.70487 0.77184 1.93411 1.67088 1.58196 1.81435 1.93396 1.41017 1.84196 1.81491 1.31496 1.53110 1.19937 1.17029 0.87788 1.25948 0.88686 0.90405 1.07712 1.70858 1.37556 1.37580 1.01517 0.83475 0.77523 0.77097 0.71838 1.19691 1.20001 1.20103 0.93736 0.92032 0.90993 0.91549 0.88908 0.91369 0.90486 0.94123 0.90503 0.91619 0.91364 0.95744 0.89559 0.93928 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 9.97 59.85 0.60 2.23 16 2 N -1.01 -20.05 3.16 -121.76 -0.38 -20.43 16 3 C 0.13 2.23 5.10 -4.04 -0.02 2.21 16 4 C -0.12 -1.82 3.29 -88.76 -0.29 -2.11 16 5 H 0.10 1.85 8.06 -51.93 -0.42 1.43 16 6 C -0.13 -1.61 6.51 -25.38 -0.17 -1.77 16 7 C 0.04 0.45 6.70 -2.76 -0.02 0.43 16 8 N -0.53 -6.98 5.55 -238.55 -1.32 -8.31 16 9 C 0.02 0.19 9.40 60.07 0.56 0.75 16 10 C 0.04 0.61 4.34 -1.79 -0.01 0.61 16 11 S 2.69 70.53 4.29 -107.50 -0.46 70.07 16 12 O -1.01 -29.08 16.72 -57.17 -0.96 -30.04 16 13 O -1.01 -28.70 16.19 -57.17 -0.93 -29.62 16 14 C -1.08 -29.73 9.75 30.60 0.30 -29.43 16 15 H 0.10 2.65 7.73 -52.48 -0.41 2.24 16 16 C 0.09 2.59 5.46 -17.82 -0.10 2.49 16 17 N -0.85 -26.02 13.66 55.43 0.76 -25.27 16 18 Si 1.08 24.23 29.90 -169.99 -5.08 19.14 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.82 5.56 -51.93 -0.29 0.53 16 24 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 25 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 26 H 0.09 1.68 6.91 -51.93 -0.36 1.32 16 27 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.42 7.73 -51.93 -0.40 0.02 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.24 8.01 -51.93 -0.42 -0.18 16 34 H 0.09 1.29 7.70 -51.93 -0.40 0.89 16 35 H 0.04 0.54 7.26 -51.92 -0.38 0.16 16 36 H 0.28 8.71 6.52 -40.82 -0.27 8.44 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -34.16 301.15 -8.45 -42.61 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.47 Total: 1.91 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 0.86 Total: -24.60 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.95 Total: -54.01 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -1.88 Total: -59.66 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.08 Total: 19.14 kcal Atomic # 16 Polarization: 70.53 SS G_CDS: -0.46 Total: 70.07 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.16 -8.45 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.423 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds