Wall clock time and date at job start Mon Mar 30 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00284 * 2 1 4 4 C 1.52999 * 109.46640 * 275.00271 * 3 2 1 5 5 H 1.08996 * 110.64475 * 305.69453 * 4 3 2 6 6 C 1.54597 * 110.72086 * 182.54587 * 4 3 2 7 7 C 1.53990 * 105.14264 * 219.68273 * 6 4 3 8 8 N 1.47900 * 107.05529 * 358.77882 * 7 6 4 9 9 C 1.46904 * 110.99942 * 145.84431 * 8 7 6 10 10 C 1.48723 * 105.94677 * 25.19807 * 8 7 6 11 11 S 1.65601 * 119.99820 * 179.97438 * 2 1 3 12 12 O 1.42101 * 106.40318 * 336.46100 * 11 2 1 13 13 O 1.42100 * 106.40446 * 203.53933 * 11 2 1 14 14 C 1.76202 * 107.21908 * 89.99759 * 11 2 1 15 15 H 1.08005 * 119.99646 * 0.02562 * 14 11 2 16 16 C 1.37875 * 120.00219 * 179.97438 * 14 11 2 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09006 * 109.46892 * 269.99648 * 1 2 3 23 23 H 1.08998 * 109.47525 * 29.99579 * 1 2 3 24 24 H 1.09002 * 109.47129 * 150.00130 * 1 2 3 25 25 H 1.09004 * 109.46736 * 34.99811 * 3 2 1 26 26 H 1.08997 * 109.47022 * 155.00405 * 3 2 1 27 27 H 1.09004 * 110.30848 * 338.60530 * 6 4 3 28 28 H 1.09005 * 110.30980 * 100.76450 * 6 4 3 29 29 H 1.09000 * 109.91808 * 118.12715 * 7 6 4 30 30 H 1.08998 * 109.92101 * 239.42239 * 7 6 4 31 31 H 1.09000 * 109.47201 * 60.12211 * 9 8 7 32 32 H 1.09001 * 109.46985 * 180.12448 * 9 8 7 33 33 H 1.08993 * 109.47003 * 300.12112 * 9 8 7 34 34 H 1.08999 * 110.84278 * 202.57792 * 10 8 7 35 35 H 1.09008 * 110.58361 * 79.38552 * 10 8 7 36 36 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7731 -1.4370 5 1 2.7993 1.0100 -2.0678 6 6 3.1686 3.0800 -1.4768 7 6 2.4720 3.9636 -2.5281 8 7 1.3387 3.1824 -3.0692 9 6 0.2055 4.0574 -3.3983 10 6 0.9704 2.2079 -2.0078 11 16 2.2929 -1.4342 0.0006 12 8 1.4112 -2.4063 0.5455 13 8 3.5759 -1.1567 0.5449 14 6 2.5537 -1.8867 -1.6822 15 1 2.1872 -1.2515 -2.4752 16 6 3.2264 -3.0510 -1.9867 17 7 3.6730 -3.8242 -1.0212 18 14 3.5021 -3.5311 -3.7708 19 1 4.2441 -4.8161 -3.8287 20 1 4.2903 -2.4728 -4.4521 21 1 2.1907 -3.6862 -4.4501 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6501 2.0043 0.5894 26 1 3.1858 1.1176 0.4342 27 1 3.1523 3.5675 -0.5020 28 1 4.1948 2.8705 -1.7787 29 1 2.1037 4.8768 -2.0605 30 1 3.1699 4.2086 -3.3286 31 1 0.5148 4.7861 -4.1476 32 1 -0.6147 3.4571 -3.7920 33 1 -0.1243 4.5782 -2.4994 34 1 0.4422 1.3539 -2.4317 35 1 0.3686 2.6899 -1.2372 36 1 3.5295 -3.5751 -0.0948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070822874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:47 Heat of formation + Delta-G solvation = -115.696252 kcal Electronic energy + Delta-G solvation = -19118.896403 eV Core-core repulsion = 16149.128233 eV Total energy + Delta-G solvation = -2969.768170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15761 -37.75950 -37.10808 -36.56513 -35.32688 -33.29697 -30.12773 -28.52998 -27.73565 -26.40001 -24.47115 -22.04126 -21.56053 -21.02846 -19.45270 -18.21282 -17.50538 -17.02227 -16.60287 -16.28810 -15.73336 -15.41878 -15.20813 -14.76109 -14.71524 -14.50054 -14.01573 -13.51392 -13.39651 -13.14456 -13.08096 -12.96772 -12.74327 -12.67786 -12.53468 -12.34268 -12.22159 -11.98798 -11.97675 -11.73015 -11.40285 -11.19915 -10.73216 -9.86330 -9.37912 -9.32115 -7.61850 0.10739 1.44526 1.48639 1.74692 2.30910 2.53411 2.59200 3.09441 3.46068 3.66121 3.72893 3.92125 4.04066 4.08576 4.29925 4.42326 4.46678 4.54869 4.57225 4.61868 4.74187 4.77067 4.79192 4.87932 4.94057 4.98113 5.02219 5.12224 5.25380 5.36136 5.43704 5.81684 5.86693 5.94084 6.15764 6.49338 7.94675 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.007773 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.520668 B = 3601.354255 C = 4232.285408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.003 6.003 3 C 0.127 3.873 4 C -0.120 4.120 5 H 0.060 0.940 6 C -0.124 4.124 7 C 0.041 3.959 8 N -0.548 5.548 9 C 0.018 3.982 10 C 0.049 3.951 11 S 2.694 3.306 12 O -1.044 7.044 13 O -1.042 7.042 14 C -1.093 5.093 15 H 0.118 0.882 16 C 0.036 3.964 17 N -0.878 5.878 18 Si 1.116 2.884 19 H -0.267 1.267 20 H -0.252 1.252 21 H -0.251 1.251 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 17.075 -4.104 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.841 5.841 3 C 0.002 3.998 4 C -0.141 4.141 5 H 0.078 0.922 6 C -0.162 4.162 7 C -0.087 4.087 8 N -0.272 5.272 9 C -0.131 4.131 10 C -0.078 4.078 11 S 2.797 3.203 12 O -1.034 7.034 13 O -1.032 7.032 14 C -1.227 5.227 15 H 0.136 0.864 16 C -0.174 4.174 17 N -0.508 5.508 18 Si 0.930 3.070 19 H -0.192 1.192 20 H -0.176 1.176 21 H -0.175 1.175 22 H 0.079 0.921 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.127 0.873 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.381 15.268 -4.665 16.847 hybrid contribution -0.845 1.250 1.414 2.068 sum -6.225 16.517 -3.250 17.948 Atomic orbital electron populations 1.21651 0.77665 1.03755 1.02420 1.57101 1.15438 1.20613 1.90955 1.21481 0.97112 0.84793 0.96414 1.22576 0.96968 0.98076 0.96462 0.92186 1.22437 0.99455 0.94118 1.00236 1.22862 0.93380 0.95455 0.96984 1.64680 1.07815 1.16002 1.38742 1.22536 0.93249 0.96512 1.00754 1.23293 0.95922 0.95782 0.92839 1.00605 0.71588 0.71496 0.76627 1.93354 1.67641 1.60659 1.81786 1.93342 1.43001 1.85046 1.81805 1.31884 1.52330 1.19986 1.18504 0.86376 1.27722 0.87721 0.90582 1.11345 1.71010 1.40090 1.38839 1.00906 0.83108 0.79139 0.77732 0.67026 1.19164 1.17606 1.17453 0.92084 0.88067 0.92481 0.87314 0.90866 0.89257 0.91104 0.91978 0.90223 0.90502 0.91282 0.94474 0.91007 0.91756 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.81 9.97 127.77 1.27 4.09 16 2 N -1.00 -39.11 3.16 -539.12 -1.70 -40.81 16 3 C 0.13 4.08 5.10 86.38 0.44 4.52 16 4 C -0.12 -3.59 3.29 -9.59 -0.03 -3.62 16 5 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 6 C -0.12 -2.88 6.51 31.47 0.20 -2.67 16 7 C 0.04 0.83 6.70 86.45 0.58 1.41 16 8 N -0.55 -12.99 5.55 -908.64 -5.04 -18.03 16 9 C 0.02 0.31 9.40 127.69 1.20 1.51 16 10 C 0.05 1.24 4.34 86.61 0.38 1.62 16 11 S 2.69 144.61 4.29 -56.49 -0.24 144.37 16 12 O -1.04 -61.82 16.72 -128.00 -2.14 -63.96 16 13 O -1.04 -61.23 16.19 -128.00 -2.07 -63.30 16 14 C -1.09 -61.03 9.75 67.73 0.66 -60.37 16 15 H 0.12 6.05 7.73 -2.91 -0.02 6.03 16 16 C 0.04 2.10 5.46 84.65 0.46 2.57 16 17 N -0.88 -55.63 13.66 21.45 0.29 -55.33 16 18 Si 1.12 47.96 29.90 68.60 2.05 50.01 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.10 2.34 5.56 -2.39 -0.01 2.33 16 24 H 0.06 1.96 7.79 -2.39 -0.02 1.94 16 25 H 0.11 2.58 8.02 -2.39 -0.02 2.56 16 26 H 0.07 2.64 6.91 -2.39 -0.02 2.62 16 27 H 0.09 1.69 7.85 -2.38 -0.02 1.67 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.06 1.02 7.73 -2.39 -0.02 1.00 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 0.56 8.01 -2.39 -0.02 0.54 16 34 H 0.07 2.01 7.70 -2.39 -0.02 1.99 16 35 H 0.06 1.34 7.26 -2.38 -0.02 1.32 16 36 H 0.26 16.89 6.52 -92.71 -0.60 16.28 16 Total: -1.00 -76.37 301.15 -2.47 -78.84 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.22 Total: 19.17 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 5.17 Total: -50.95 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -6.45 Total: -114.18 kcal Atomic # 8 Polarization: -123.05 SS G_CDS: -4.21 Total: -127.26 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.05 Total: 50.01 kcal Atomic # 16 Polarization: 144.61 SS G_CDS: -0.24 Total: 144.37 kcal Total: -76.37 -2.47 -78.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.856 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds