Wall clock time and date at job start Mon Mar 30 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.44819 * 2 1 4 4 O 1.43008 * 109.44413 * 240.06432 * 2 1 3 5 5 C 1.35933 * 116.69221 * 286.30489 * 4 2 1 6 6 C 1.38419 * 120.67828 * 146.97628 * 5 4 2 7 7 C 1.38296 * 119.87909 * 179.78663 * 6 5 4 8 8 C 1.50700 * 119.85940 * 180.24975 * 7 6 5 9 9 N 1.46907 * 109.46666 * 270.28581 * 8 7 6 10 10 C 1.38340 * 120.28363 * 0.53119 * 7 6 5 11 11 C 1.38224 * 120.21998 * 359.71361 * 10 7 6 12 12 C 1.38640 * 119.80118 * 359.97438 * 11 10 7 13 13 N 1.39945 * 120.73903 * 180.02562 * 12 11 10 14 14 C 1.37093 * 120.49815 * 15.38225 * 13 12 11 15 15 H 1.07995 * 120.00422 * 221.95905 * 14 13 12 16 16 C 1.38885 * 119.99653 * 41.96252 * 14 13 12 17 17 N 1.31432 * 119.99704 * 15.54266 * 16 14 13 18 18 Si 1.86799 * 119.99817 * 195.54270 * 16 14 13 19 19 H 1.48500 * 109.47164 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46820 * 120.00156 * 18 16 14 21 21 H 1.48497 * 109.47131 * 239.99772 * 18 16 14 22 22 C 1.35079 * 119.00496 * 195.41253 * 13 12 11 23 23 O 1.21289 * 120.12334 * 181.67781 * 22 13 12 24 24 H 1.09004 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47141 * 299.93748 * 1 2 3 26 26 H 1.09000 * 109.47323 * 59.93943 * 1 2 3 27 27 H 1.08000 * 120.05808 * 0.03580 * 6 5 4 28 28 H 1.08999 * 109.47107 * 30.28100 * 8 7 6 29 29 H 1.08996 * 109.47260 * 150.28804 * 8 7 6 30 30 H 1.00893 * 110.99986 * 56.04642 * 9 8 7 31 31 H 1.00901 * 110.99724 * 180.02562 * 9 8 7 32 32 H 1.07998 * 119.89171 * 179.68439 * 10 7 6 33 33 H 1.07996 * 120.09941 * 179.97438 * 11 10 7 34 34 H 0.97005 * 119.99478 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6729 -1.1686 5 6 1.8878 -2.0270 -1.1843 6 6 1.6547 -2.7020 -2.3701 7 6 1.5416 -4.0803 -2.3676 8 6 1.2935 -4.8151 -3.6597 9 7 -0.1533 -4.9353 -3.8845 10 6 1.6495 -4.7869 -1.1832 11 6 1.8771 -4.1206 0.0063 12 6 1.9980 -2.7395 0.0102 13 7 2.2291 -2.0450 1.2029 14 6 2.6493 -2.7106 2.3254 15 1 2.2275 -2.4649 3.2887 16 6 3.6178 -3.7009 2.2236 17 7 4.3473 -3.7971 1.1346 18 14 3.8833 -4.8961 3.6344 19 1 2.9409 -4.5776 4.7370 20 1 3.6402 -6.2825 3.1610 21 1 5.2795 -4.7787 4.1264 22 6 2.0313 -0.7091 1.2319 23 8 2.2545 -0.0826 2.2462 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5129 0.8905 26 1 -0.3634 0.5148 -0.8894 27 1 1.5654 -2.1535 -3.2961 28 1 1.7446 -4.2629 -4.4841 29 1 1.7362 -5.8095 -3.6030 30 1 -0.5970 -4.0292 -3.8766 31 1 -0.3459 -5.4252 -4.7453 32 1 1.5550 -5.8628 -1.1878 33 1 1.9606 -4.6742 0.9298 34 1 5.0234 -4.4891 1.0633 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074335032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:49 Heat of formation + Delta-G solvation = -36.924711 kcal Electronic energy + Delta-G solvation = -20278.639971 eV Core-core repulsion = 17176.843640 eV Total energy + Delta-G solvation = -3101.796331 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65127 -37.95258 -37.06654 -35.48922 -33.56626 -31.98320 -31.25699 -29.39093 -28.57124 -25.93719 -24.31800 -23.47935 -22.04821 -21.01793 -18.62470 -18.11784 -17.41597 -16.28925 -15.53910 -15.35078 -15.04585 -14.72018 -14.35550 -14.05282 -13.91509 -13.65546 -13.33879 -13.09188 -12.38348 -12.20891 -12.03250 -11.84141 -11.80607 -11.43426 -11.13799 -11.11979 -10.76322 -10.51593 -10.39236 -10.22318 -9.45501 -8.96532 -8.63627 -8.55127 -7.70880 -6.90929 -6.38872 -4.30939 1.98593 2.19822 3.04026 3.15568 3.21116 3.43774 3.79942 4.08203 4.45705 4.49314 4.87309 4.98529 5.08825 5.31727 5.40054 5.44053 5.48653 5.64472 5.84621 5.91487 5.95085 6.04173 6.21939 6.31576 6.49988 6.72008 6.93665 7.13508 7.21226 7.35597 7.37190 7.47998 7.58079 7.80324 8.08150 8.24149 8.81052 9.03449 9.52501 10.50772 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.010009 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.671462 B = 2796.808682 C = 4167.202034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 H 0.132 0.868 4 O -0.310 6.310 5 C 0.053 3.947 6 C -0.116 4.116 7 C -0.116 4.116 8 C 0.115 3.885 9 N -0.846 5.846 10 C -0.099 4.099 11 C -0.085 4.085 12 C 0.152 3.848 13 N -0.378 5.378 14 C -0.341 4.341 15 H 0.099 0.901 16 C 0.047 3.953 17 N -0.841 5.841 18 Si 0.921 3.079 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.277 1.277 22 C 0.447 3.553 23 O -0.541 6.541 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.341 0.659 31 H 0.335 0.665 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 -1.437 -8.608 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 H 0.150 0.850 4 O -0.225 6.225 5 C 0.007 3.993 6 C -0.136 4.136 7 C -0.118 4.118 8 C -0.015 4.015 9 N -0.376 5.376 10 C -0.119 4.119 11 C -0.106 4.106 12 C 0.054 3.946 13 N -0.087 5.087 14 C -0.468 4.468 15 H 0.117 0.883 16 C -0.162 4.162 17 N -0.473 5.473 18 Si 0.745 3.255 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.203 1.203 22 C 0.236 3.764 23 O -0.421 6.421 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.134 0.866 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.151 -1.476 -7.526 9.832 hybrid contribution 0.624 -0.092 -0.063 0.634 sum -5.528 -1.568 -7.589 9.519 Atomic orbital electron populations 1.22288 0.94160 1.03423 1.03064 1.22767 0.95383 0.97165 0.82915 0.85048 1.86120 1.79695 1.16832 1.39895 1.18462 1.05729 0.82037 0.93106 1.19943 1.04803 0.93249 0.95595 1.19106 1.05832 0.92222 0.94665 1.20523 0.88161 0.99247 0.93592 1.58746 1.10992 1.25713 1.42140 1.20634 1.00830 0.98888 0.91519 1.20566 0.99563 0.92149 0.98350 1.18227 0.97868 0.92830 0.85718 1.41284 1.53955 1.04437 1.09014 1.19454 1.21778 1.18451 0.87100 0.88320 1.25515 0.93735 0.99031 0.97873 1.70040 1.18218 1.31548 1.27509 0.85961 0.78774 0.79708 0.81008 1.18802 1.19972 1.20280 1.21241 0.82033 0.83085 0.90010 1.90571 1.52568 1.65151 1.33794 0.91767 0.90739 0.90953 0.86577 0.95362 0.90739 0.84681 0.85335 0.86924 0.85372 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.30 37.16 0.35 -2.45 16 2 C 0.08 1.54 3.81 -27.87 -0.11 1.44 16 3 H 0.13 2.31 8.14 -51.93 -0.42 1.89 16 4 O -0.31 -6.53 10.18 -19.53 -0.20 -6.73 16 5 C 0.05 1.15 5.85 -39.04 -0.23 0.92 16 6 C -0.12 -2.15 9.65 -39.49 -0.38 -2.53 16 7 C -0.12 -2.03 5.40 -104.56 -0.56 -2.59 16 8 C 0.11 1.55 6.90 -4.97 -0.03 1.51 16 9 N -0.85 -10.03 9.61 -11.41 -0.11 -10.13 16 10 C -0.10 -1.91 9.69 -39.55 -0.38 -2.29 16 11 C -0.08 -1.92 7.70 -39.44 -0.30 -2.22 16 12 C 0.15 3.66 5.47 -83.53 -0.46 3.20 16 13 N -0.38 -9.96 2.75 -58.80 -0.16 -10.12 16 14 C -0.34 -9.37 8.32 -14.96 -0.12 -9.49 16 15 H 0.10 2.76 7.85 -52.49 -0.41 2.35 16 16 C 0.05 1.23 3.50 -17.48 -0.06 1.17 16 17 N -0.84 -22.64 11.45 55.49 0.64 -22.00 16 18 Si 0.92 19.94 29.58 -169.99 -5.03 14.91 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.45 11.25 6.87 -10.84 -0.07 11.18 16 23 O -0.54 -14.97 17.09 5.55 0.09 -14.87 16 24 H 0.06 1.12 7.81 -51.93 -0.41 0.71 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 30 H 0.34 3.86 8.98 -39.30 -0.35 3.50 16 31 H 0.33 3.06 9.08 -39.29 -0.36 2.70 16 32 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.13 3.03 6.10 -52.49 -0.32 2.71 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -31.13 289.29 -6.72 -37.85 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.94 Total: 8.90 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.37 Total: -2.15 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.36 Total: -42.26 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.10 Total: -21.60 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.13 -6.72 -37.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074335032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.921 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds