Wall clock time and date at job start Mon Mar 30 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.44819 * 2 1 4 4 O 1.43008 * 109.44413 * 240.06432 * 2 1 3 5 5 C 1.35933 * 116.69221 * 286.30489 * 4 2 1 6 6 C 1.38419 * 120.67828 * 146.97628 * 5 4 2 7 7 C 1.38296 * 119.87909 * 179.78663 * 6 5 4 8 8 C 1.50700 * 119.85940 * 180.24975 * 7 6 5 9 9 N 1.46907 * 109.46666 * 270.28581 * 8 7 6 10 10 C 1.38340 * 120.28363 * 0.53119 * 7 6 5 11 11 C 1.38224 * 120.21998 * 359.71361 * 10 7 6 12 12 C 1.38640 * 119.80118 * 359.97438 * 11 10 7 13 13 N 1.39945 * 120.73903 * 180.02562 * 12 11 10 14 14 C 1.37093 * 120.49815 * 15.38225 * 13 12 11 15 15 H 1.07995 * 120.00422 * 221.95905 * 14 13 12 16 16 C 1.38885 * 119.99653 * 41.96252 * 14 13 12 17 17 N 1.31432 * 119.99704 * 15.54266 * 16 14 13 18 18 Si 1.86799 * 119.99817 * 195.54270 * 16 14 13 19 19 H 1.48500 * 109.47164 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46820 * 120.00156 * 18 16 14 21 21 H 1.48497 * 109.47131 * 239.99772 * 18 16 14 22 22 C 1.35079 * 119.00496 * 195.41253 * 13 12 11 23 23 O 1.21289 * 120.12334 * 181.67781 * 22 13 12 24 24 H 1.09004 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47141 * 299.93748 * 1 2 3 26 26 H 1.09000 * 109.47323 * 59.93943 * 1 2 3 27 27 H 1.08000 * 120.05808 * 0.03580 * 6 5 4 28 28 H 1.08999 * 109.47107 * 30.28100 * 8 7 6 29 29 H 1.08996 * 109.47260 * 150.28804 * 8 7 6 30 30 H 1.00893 * 110.99986 * 56.04642 * 9 8 7 31 31 H 1.00901 * 110.99724 * 180.02562 * 9 8 7 32 32 H 1.07998 * 119.89171 * 179.68439 * 10 7 6 33 33 H 1.07996 * 120.09941 * 179.97438 * 11 10 7 34 34 H 0.97005 * 119.99478 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6729 -1.1686 5 6 1.8878 -2.0270 -1.1843 6 6 1.6547 -2.7020 -2.3701 7 6 1.5416 -4.0803 -2.3676 8 6 1.2935 -4.8151 -3.6597 9 7 -0.1533 -4.9353 -3.8845 10 6 1.6495 -4.7869 -1.1832 11 6 1.8771 -4.1206 0.0063 12 6 1.9980 -2.7395 0.0102 13 7 2.2291 -2.0450 1.2029 14 6 2.6493 -2.7106 2.3254 15 1 2.2275 -2.4649 3.2887 16 6 3.6178 -3.7009 2.2236 17 7 4.3473 -3.7971 1.1346 18 14 3.8833 -4.8961 3.6344 19 1 2.9409 -4.5776 4.7370 20 1 3.6402 -6.2825 3.1610 21 1 5.2795 -4.7787 4.1264 22 6 2.0313 -0.7091 1.2319 23 8 2.2545 -0.0826 2.2462 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5129 0.8905 26 1 -0.3634 0.5148 -0.8894 27 1 1.5654 -2.1535 -3.2961 28 1 1.7446 -4.2629 -4.4841 29 1 1.7362 -5.8095 -3.6030 30 1 -0.5970 -4.0292 -3.8766 31 1 -0.3459 -5.4252 -4.7453 32 1 1.5550 -5.8628 -1.1878 33 1 1.9606 -4.6742 0.9298 34 1 5.0234 -4.4891 1.0633 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074335032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:49 Heat of formation + Delta-G solvation = -59.653559 kcal Electronic energy + Delta-G solvation = -20279.625567 eV Core-core repulsion = 17176.843640 eV Total energy + Delta-G solvation = -3102.781928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.35761 -39.64527 -38.72467 -37.19712 -34.88793 -33.92538 -32.76846 -30.93230 -30.10020 -27.79277 -25.66635 -25.08951 -23.72690 -22.55821 -20.36137 -19.86774 -19.13917 -17.92137 -17.07824 -16.91823 -16.65015 -16.34271 -15.79190 -15.57737 -15.53007 -15.11289 -14.99088 -14.71370 -14.01129 -13.76003 -13.53257 -13.32622 -13.24488 -13.02873 -12.84483 -12.80008 -12.36395 -12.21200 -11.94122 -11.84392 -11.33918 -10.80556 -10.47094 -9.50800 -9.30584 -8.76175 -8.27297 -6.37017 0.35322 0.59936 1.28829 1.34595 1.48814 1.70391 2.05448 2.34870 2.72197 2.79128 3.10365 3.39796 3.89036 3.94270 4.00338 4.05501 4.09337 4.34939 4.45164 4.58370 4.66988 4.70455 4.87981 4.93977 5.02153 5.14651 5.28685 5.37005 5.52519 5.77414 5.92181 6.01475 6.12903 6.32374 6.48264 6.76096 6.85011 7.12338 7.59451 8.53636 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.010009 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.671462 B = 2796.808682 C = 4167.202034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.083 3.917 3 H 0.155 0.845 4 O -0.312 6.312 5 C 0.041 3.959 6 C -0.110 4.110 7 C -0.096 4.096 8 C 0.119 3.881 9 N -0.852 5.852 10 C -0.104 4.104 11 C -0.099 4.099 12 C 0.115 3.885 13 N -0.394 5.394 14 C -0.376 4.376 15 H 0.076 0.924 16 C 0.018 3.982 17 N -0.867 5.867 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.256 1.256 21 H -0.274 1.274 22 C 0.424 3.576 23 O -0.588 6.588 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.150 0.850 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.345 0.655 31 H 0.354 0.646 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -2.521 -11.321 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.172 0.828 4 O -0.228 6.228 5 C -0.005 4.005 6 C -0.129 4.129 7 C -0.098 4.098 8 C -0.011 4.011 9 N -0.384 5.384 10 C -0.123 4.123 11 C -0.120 4.120 12 C 0.018 3.982 13 N -0.103 5.103 14 C -0.502 4.502 15 H 0.093 0.907 16 C -0.189 4.189 17 N -0.500 5.500 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.180 1.180 21 H -0.200 1.200 22 C 0.215 3.785 23 O -0.472 6.472 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.168 0.832 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.124 0.876 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.978 -2.591 -10.304 12.711 hybrid contribution 0.833 0.190 0.651 1.074 sum -6.145 -2.401 -9.653 11.692 Atomic orbital electron populations 1.22235 0.91117 1.03091 1.05253 1.22896 0.97669 0.97009 0.80093 0.82812 1.86096 1.80199 1.16641 1.39827 1.18818 1.06009 0.82320 0.93362 1.20369 1.03168 0.93814 0.95594 1.19615 1.02247 0.92060 0.95833 1.20509 0.89510 0.99431 0.91667 1.58645 1.09750 1.26327 1.43686 1.20914 1.00305 1.00062 0.91035 1.20576 1.00639 0.91870 0.98943 1.18527 1.00409 0.93575 0.85668 1.41473 1.54198 1.05141 1.09528 1.19458 1.23288 1.20199 0.87268 0.90658 1.26256 0.92665 0.99655 1.00290 1.70115 1.18547 1.32171 1.29122 0.85038 0.78414 0.78125 0.77857 1.19003 1.17976 1.19961 1.22244 0.81826 0.83053 0.91376 1.90511 1.55000 1.65935 1.35790 0.93309 0.90012 0.87156 0.83213 0.93248 0.89828 0.84167 0.83192 0.84794 0.87557 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.30 71.98 0.67 -4.32 16 2 C 0.08 3.27 3.81 29.86 0.11 3.39 16 3 H 0.15 5.31 8.14 -2.39 -0.02 5.29 16 4 O -0.31 -12.84 10.18 -92.80 -0.94 -13.78 16 5 C 0.04 1.74 5.85 22.62 0.13 1.87 16 6 C -0.11 -3.75 9.65 22.33 0.22 -3.53 16 7 C -0.10 -3.04 5.40 -19.83 -0.11 -3.15 16 8 C 0.12 2.66 6.90 85.56 0.59 3.25 16 9 N -0.85 -16.49 9.61 -190.00 -1.83 -18.32 16 10 C -0.10 -3.83 9.69 22.29 0.22 -3.62 16 11 C -0.10 -4.54 7.70 22.36 0.17 -4.37 16 12 C 0.11 5.64 5.47 38.25 0.21 5.85 16 13 N -0.39 -21.75 2.75 -458.16 -1.26 -23.01 16 14 C -0.38 -21.81 8.32 84.03 0.70 -21.11 16 15 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 16 C 0.02 0.96 3.50 84.91 0.30 1.26 16 17 N -0.87 -47.78 11.45 21.65 0.25 -47.53 16 18 Si 0.98 41.94 29.58 68.60 2.03 43.97 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 C 0.42 22.29 6.87 87.62 0.60 22.89 16 23 O -0.59 -34.45 17.09 -3.06 -0.05 -34.50 16 24 H 0.05 1.67 7.81 -2.38 -0.02 1.65 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 29 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 30 H 0.35 6.34 8.98 -89.70 -0.81 5.53 16 31 H 0.35 4.86 9.08 -89.69 -0.81 4.05 16 32 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.11 5.23 6.10 -2.91 -0.02 5.22 16 34 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -71.26 289.29 1.53 -69.73 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.47 Total: 25.03 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 3.81 Total: -1.58 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.84 Total: -88.86 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.00 Total: -48.28 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.26 1.53 -69.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074335032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.076 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds