Wall clock time and date at job start Mon Mar 30 2020 05:10:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09008 * 109.44562 * 2 1
4 4 O 1.43003 * 109.44809 * 119.93753 * 2 1 3
5 5 C 1.35930 * 116.69800 * 166.33905 * 4 2 1
6 6 C 1.38414 * 120.67727 * 147.27072 * 5 4 2
7 7 C 1.38295 * 119.87903 * 180.09457 * 6 5 4
8 8 C 1.38341 * 120.28446 * 359.95211 * 7 6 5
9 9 C 1.50693 * 119.89298 * 179.97438 * 8 7 6
10 10 N 1.46903 * 109.47391 * 270.02114 * 9 8 7
11 11 C 1.38224 * 120.21732 * 359.97438 * 8 7 6
12 12 C 1.38633 * 119.80484 * 0.02562 * 11 8 7
13 13 N 1.39945 * 120.74682 * 180.08120 * 12 11 8
14 14 C 1.37104 * 120.49389 * 15.42503 * 13 12 11
15 15 H 1.07995 * 120.00084 * 221.94598 * 14 13 12
16 16 C 1.38871 * 119.99690 * 41.94631 * 14 13 12
17 17 N 1.31434 * 120.00230 * 15.53452 * 16 14 13
18 18 Si 1.86803 * 119.99933 * 195.53532 * 16 14 13
19 19 H 1.48508 * 109.46640 * 270.00060 * 18 16 14
20 20 H 1.48499 * 109.47015 * 29.99723 * 18 16 14
21 21 H 1.48500 * 109.47421 * 150.00243 * 18 16 14
22 22 C 1.35081 * 119.01178 * 195.69803 * 13 12 11
23 23 O 1.21281 * 120.12825 * 181.42064 * 22 13 12
24 24 H 1.08999 * 109.46707 * 300.06215 * 1 2 3
25 25 H 1.08999 * 109.46925 * 60.05544 * 1 2 3
26 26 H 1.08995 * 109.47283 * 180.02562 * 1 2 3
27 27 H 1.07999 * 120.05898 * 0.09015 * 6 5 4
28 28 H 1.08000 * 119.86318 * 179.97438 * 7 6 5
29 29 H 1.09007 * 109.47168 * 30.01891 * 9 8 7
30 30 H 1.08999 * 109.47694 * 150.01824 * 9 8 7
31 31 H 1.00900 * 110.99739 * 56.04033 * 10 9 8
32 32 H 1.00887 * 111.00183 * 179.97438 * 10 9 8
33 33 H 1.08002 * 120.09088 * 180.02562 * 11 8 7
34 34 H 0.97000 * 119.99965 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8929 1.0279 0.0000
4 8 2.0061 -0.6729 1.1685
5 6 3.3222 -1.0128 1.1839
6 6 4.0349 -1.0237 2.3705
7 6 5.3737 -1.3702 2.3668
8 6 6.0039 -1.7071 1.1823
9 6 7.4633 -2.0827 1.1884
10 7 8.2801 -0.8771 0.9955
11 6 5.2994 -1.7003 -0.0069
12 6 3.9570 -1.3540 -0.0106
13 7 3.2244 -1.3421 -1.2029
14 6 3.7109 -1.9627 -2.3246
15 1 3.6193 -1.4849 -3.2887
16 6 4.3213 -3.2058 -2.2207
17 7 4.1695 -3.9234 -1.1301
18 14 5.3582 -3.8578 -3.6311
19 1 4.4980 -4.6343 -4.5600
20 1 5.9733 -2.7200 -4.3605
21 1 6.4271 -4.7377 -3.0942
22 6 2.0335 -0.7054 -1.2338
23 8 1.3699 -0.7045 -2.2490
24 1 -0.3633 0.5148 0.8894
25 1 -0.3633 0.5130 -0.8905
26 1 -0.3633 -1.0276 0.0005
27 1 3.5463 -0.7620 3.2974
28 1 5.9296 -1.3783 3.2927
29 1 7.7158 -2.5437 2.1434
30 1 7.6604 -2.7881 0.3811
31 1 8.0684 -0.1813 1.6949
32 1 9.2634 -1.1026 0.9963
33 1 5.7933 -1.9641 -0.9305
34 1 4.5956 -4.7918 -1.0578
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000074336187.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:10:53
Heat of formation + Delta-G solvation = -35.588482 kcal
Electronic energy + Delta-G solvation = -20283.054455 eV
Core-core repulsion = 17181.316067 eV
Total energy + Delta-G solvation = -3101.738387 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.54968 -37.95975 -37.06433 -35.33098 -33.76203 -31.96195 -31.24928 -29.33958
-28.44166 -26.01884 -24.24905 -23.12044 -21.97757 -21.17543 -18.71516 -18.06229
-17.40022 -16.26710 -15.77242 -15.65352 -15.00168 -14.46960 -14.06863 -13.95430
-13.79175 -13.52965 -13.22561 -13.08335 -12.53233 -12.23048 -11.99317 -11.76408
-11.54988 -11.54121 -11.07579 -11.05430 -10.79124 -10.52057 -10.35386 -10.16441
-9.44709 -8.96114 -8.61417 -8.49074 -7.63597 -6.90613 -6.37867 -4.28101
1.97538 2.21685 3.07402 3.16681 3.21335 3.44712 3.80110 4.08985
4.45431 4.50243 4.88913 5.06090 5.13464 5.39722 5.42901 5.46165
5.48787 5.73945 5.86181 5.95692 6.06056 6.12063 6.28699 6.45925
6.47363 6.76663 6.86987 7.17560 7.25839 7.36873 7.38489 7.54426
7.63446 7.81560 8.10328 8.25838 8.83595 9.05896 9.55098 10.53204
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.014117 B = 0.011725 C = 0.007034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1982.976331 B = 2387.574464 C = 3979.536661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.077 3.923
3 H 0.081 0.919
4 O -0.312 6.312
5 C 0.054 3.946
6 C -0.124 4.124
7 C -0.139 4.139
8 C -0.095 4.095
9 C 0.111 3.889
10 N -0.844 5.844
11 C -0.056 4.056
12 C 0.145 3.855
13 N -0.380 5.380
14 C -0.340 4.340
15 H 0.098 0.902
16 C 0.049 3.951
17 N -0.842 5.842
18 Si 0.919 3.081
19 H -0.273 1.273
20 H -0.264 1.264
21 H -0.278 1.278
22 C 0.445 3.555
23 O -0.537 6.537
24 H 0.067 0.933
25 H 0.084 0.916
26 H 0.066 0.934
27 H 0.121 0.879
28 H 0.111 0.889
29 H 0.029 0.971
30 H 0.076 0.924
31 H 0.339 0.661
32 H 0.335 0.665
33 H 0.129 0.871
34 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.367 4.506 7.245 9.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.017 3.983
3 H 0.099 0.901
4 O -0.227 6.227
5 C 0.008 3.992
6 C -0.143 4.143
7 C -0.159 4.159
8 C -0.096 4.096
9 C -0.019 4.019
10 N -0.374 5.374
11 C -0.078 4.078
12 C 0.047 3.953
13 N -0.089 5.089
14 C -0.466 4.466
15 H 0.116 0.884
16 C -0.160 4.160
17 N -0.475 5.475
18 Si 0.744 3.256
19 H -0.199 1.199
20 H -0.188 1.188
21 H -0.203 1.203
22 C 0.234 3.766
23 O -0.417 6.417
24 H 0.086 0.914
25 H 0.103 0.897
26 H 0.085 0.915
27 H 0.139 0.861
28 H 0.129 0.871
29 H 0.047 0.953
30 H 0.094 0.906
31 H 0.152 0.848
32 H 0.147 0.853
33 H 0.147 0.853
34 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 3.504 4.305 6.124 8.265
hybrid contribution 0.952 -0.853 0.217 1.297
sum 4.457 3.452 6.341 8.485
Atomic orbital electron populations
1.21579 0.90429 1.03726 1.02633 1.22506 0.97032 0.95676 0.83067
0.90139 1.86060 1.22455 1.74600 1.39596 1.18593 0.83180 1.04165
0.93281 1.20066 0.93429 1.05225 0.95567 1.20397 0.93910 1.04691
0.96895 1.19366 0.94557 1.02608 0.93100 1.20577 0.90073 0.91714
0.99525 1.58702 1.08776 1.12568 1.57343 1.20375 0.91339 0.98323
0.97742 1.18223 0.92307 0.98958 0.85840 1.41275 1.14211 1.44359
1.09043 1.19383 1.39283 1.00904 0.87042 0.88402 1.25486 0.97740
0.94972 0.97824 1.70034 1.38939 1.11091 1.27433 0.86051 0.79475
0.79188 0.80899 1.19876 1.18815 1.20295 1.21283 0.81478 0.83777
0.90088 1.90552 1.55519 1.62021 1.33589 0.91439 0.89737 0.91470
0.86130 0.87067 0.95324 0.90601 0.84849 0.85251 0.85280 0.91612
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.13 9.15 37.16 0.34 -1.79 16
2 C 0.08 1.57 3.68 -27.84 -0.10 1.47 16
3 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16
4 O -0.31 -6.71 10.09 -19.52 -0.20 -6.90 16
5 C 0.05 1.20 6.45 -39.04 -0.25 0.95 16
6 C -0.12 -2.32 10.00 -39.50 -0.39 -2.71 16
7 C -0.14 -2.41 9.69 -39.52 -0.38 -2.79 16
8 C -0.09 -1.80 5.39 -104.59 -0.56 -2.36 16
9 C 0.11 1.72 6.91 -4.98 -0.03 1.69 16
10 N -0.84 -11.37 9.61 -11.41 -0.11 -11.48 16
11 C -0.06 -1.27 7.35 -39.44 -0.29 -1.56 16
12 C 0.14 3.55 5.47 -83.53 -0.46 3.10 16
13 N -0.38 -10.17 2.75 -58.78 -0.16 -10.33 16
14 C -0.34 -9.43 8.33 -14.96 -0.12 -9.55 16
15 H 0.10 2.76 7.84 -52.49 -0.41 2.35 16
16 C 0.05 1.27 3.51 -17.49 -0.06 1.21 16
17 N -0.84 -22.78 11.45 55.49 0.64 -22.15 16
18 Si 0.92 20.17 29.58 -169.99 -5.03 15.14 16
19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16
21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16
22 C 0.44 11.32 7.33 -10.81 -0.08 11.24 16
23 O -0.54 -14.75 16.15 5.56 0.09 -14.66 16
24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
25 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16
26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
27 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16
28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16
29 H 0.03 0.39 8.08 -51.92 -0.42 -0.03 16
30 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16
31 H 0.34 4.12 8.98 -39.29 -0.35 3.77 16
32 H 0.34 3.58 9.08 -39.30 -0.36 3.22 16
33 H 0.13 3.15 6.11 -52.49 -0.32 2.83 16
34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16
LS Contribution 289.09 15.07 4.36 4.36
Total: -1.00 -31.33 289.09 -6.75 -38.08
By element:
Atomic # 1 Polarization: 13.01 SS G_CDS: -3.94 Total: 9.07 kcal
Atomic # 6 Polarization: 1.27 SS G_CDS: -2.40 Total: -1.13 kcal
Atomic # 7 Polarization: -44.32 SS G_CDS: 0.36 Total: -43.96 kcal
Atomic # 8 Polarization: -21.46 SS G_CDS: -0.11 Total: -21.56 kcal
Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -31.33 -6.75 -38.08 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074336187.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.497 kcal
(2) G-P(sol) polarization free energy of solvation -31.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.834 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds