Wall clock time and date at job start Mon Mar 30 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.44562 * 2 1 4 4 O 1.43003 * 109.44809 * 119.93753 * 2 1 3 5 5 C 1.35930 * 116.69800 * 166.33905 * 4 2 1 6 6 C 1.38414 * 120.67727 * 147.27072 * 5 4 2 7 7 C 1.38295 * 119.87903 * 180.09457 * 6 5 4 8 8 C 1.38341 * 120.28446 * 359.95211 * 7 6 5 9 9 C 1.50693 * 119.89298 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.47391 * 270.02114 * 9 8 7 11 11 C 1.38224 * 120.21732 * 359.97438 * 8 7 6 12 12 C 1.38633 * 119.80484 * 0.02562 * 11 8 7 13 13 N 1.39945 * 120.74682 * 180.08120 * 12 11 8 14 14 C 1.37104 * 120.49389 * 15.42503 * 13 12 11 15 15 H 1.07995 * 120.00084 * 221.94598 * 14 13 12 16 16 C 1.38871 * 119.99690 * 41.94631 * 14 13 12 17 17 N 1.31434 * 120.00230 * 15.53452 * 16 14 13 18 18 Si 1.86803 * 119.99933 * 195.53532 * 16 14 13 19 19 H 1.48508 * 109.46640 * 270.00060 * 18 16 14 20 20 H 1.48499 * 109.47015 * 29.99723 * 18 16 14 21 21 H 1.48500 * 109.47421 * 150.00243 * 18 16 14 22 22 C 1.35081 * 119.01178 * 195.69803 * 13 12 11 23 23 O 1.21281 * 120.12825 * 181.42064 * 22 13 12 24 24 H 1.08999 * 109.46707 * 300.06215 * 1 2 3 25 25 H 1.08999 * 109.46925 * 60.05544 * 1 2 3 26 26 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.05898 * 0.09015 * 6 5 4 28 28 H 1.08000 * 119.86318 * 179.97438 * 7 6 5 29 29 H 1.09007 * 109.47168 * 30.01891 * 9 8 7 30 30 H 1.08999 * 109.47694 * 150.01824 * 9 8 7 31 31 H 1.00900 * 110.99739 * 56.04033 * 10 9 8 32 32 H 1.00887 * 111.00183 * 179.97438 * 10 9 8 33 33 H 1.08002 * 120.09088 * 180.02562 * 11 8 7 34 34 H 0.97000 * 119.99965 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0061 -0.6729 1.1685 5 6 3.3222 -1.0128 1.1839 6 6 4.0349 -1.0237 2.3705 7 6 5.3737 -1.3702 2.3668 8 6 6.0039 -1.7071 1.1823 9 6 7.4633 -2.0827 1.1884 10 7 8.2801 -0.8771 0.9955 11 6 5.2994 -1.7003 -0.0069 12 6 3.9570 -1.3540 -0.0106 13 7 3.2244 -1.3421 -1.2029 14 6 3.7109 -1.9627 -2.3246 15 1 3.6193 -1.4849 -3.2887 16 6 4.3213 -3.2058 -2.2207 17 7 4.1695 -3.9234 -1.1301 18 14 5.3582 -3.8578 -3.6311 19 1 4.4980 -4.6343 -4.5600 20 1 5.9733 -2.7200 -4.3605 21 1 6.4271 -4.7377 -3.0942 22 6 2.0335 -0.7054 -1.2338 23 8 1.3699 -0.7045 -2.2490 24 1 -0.3633 0.5148 0.8894 25 1 -0.3633 0.5130 -0.8905 26 1 -0.3633 -1.0276 0.0005 27 1 3.5463 -0.7620 3.2974 28 1 5.9296 -1.3783 3.2927 29 1 7.7158 -2.5437 2.1434 30 1 7.6604 -2.7881 0.3811 31 1 8.0684 -0.1813 1.6949 32 1 9.2634 -1.1026 0.9963 33 1 5.7933 -1.9641 -0.9305 34 1 4.5956 -4.7918 -1.0578 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074336187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:52 Heat of formation + Delta-G solvation = -58.603823 kcal Electronic energy + Delta-G solvation = -20284.052475 eV Core-core repulsion = 17181.316067 eV Total energy + Delta-G solvation = -3102.736408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27079 -39.65802 -38.74200 -37.08501 -35.13706 -33.92779 -32.75411 -30.91297 -30.01043 -27.89951 -25.60462 -24.83784 -23.65806 -22.70662 -20.49812 -19.75877 -19.19356 -17.94861 -17.47256 -17.09010 -16.73533 -15.88877 -15.74424 -15.58693 -15.39238 -15.18380 -14.84931 -14.61575 -14.03776 -13.90944 -13.47723 -13.35062 -13.20849 -13.00029 -12.82545 -12.72854 -12.44971 -12.21874 -11.91273 -11.77977 -11.34085 -10.82760 -10.48449 -9.55049 -9.23206 -8.76089 -8.29195 -6.35836 0.35348 0.61131 1.28909 1.33218 1.46257 1.70845 2.04698 2.33445 2.71032 2.79172 3.11070 3.41501 3.90344 3.93336 3.94856 4.00128 4.10792 4.33849 4.54720 4.56164 4.76105 4.78451 4.80908 4.94775 5.11084 5.17078 5.28659 5.35325 5.53717 5.77576 5.96309 6.00776 6.14118 6.30076 6.48220 6.73842 6.85904 7.13084 7.60462 8.54212 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.011725 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.976331 B = 2387.574464 C = 3979.536661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.082 3.918 3 H 0.105 0.895 4 O -0.313 6.313 5 C 0.033 3.967 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.096 4.096 9 C 0.116 3.884 10 N -0.853 5.853 11 C -0.073 4.073 12 C 0.106 3.894 13 N -0.397 5.397 14 C -0.375 4.375 15 H 0.075 0.925 16 C 0.020 3.980 17 N -0.866 5.866 18 Si 0.981 3.019 19 H -0.273 1.273 20 H -0.262 1.262 21 H -0.260 1.260 22 C 0.420 3.580 23 O -0.580 6.580 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.349 0.651 32 H 0.353 0.647 33 H 0.101 0.899 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 4.746 10.027 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.022 3.978 3 H 0.123 0.877 4 O -0.229 6.229 5 C -0.013 4.013 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.097 4.097 9 C -0.014 4.014 10 N -0.386 5.386 11 C -0.095 4.095 12 C 0.009 3.991 13 N -0.107 5.107 14 C -0.501 4.501 15 H 0.092 0.908 16 C -0.186 4.186 17 N -0.499 5.499 18 Si 0.802 3.198 19 H -0.199 1.199 20 H -0.186 1.186 21 H -0.184 1.184 22 C 0.211 3.789 23 O -0.463 6.463 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.119 0.881 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.080 4.555 8.958 11.260 hybrid contribution 0.564 -0.898 -0.537 1.188 sum 5.644 3.657 8.421 10.777 Atomic orbital electron populations 1.21617 0.87822 1.03294 1.04824 1.22675 0.98870 0.95769 0.80441 0.87715 1.86041 1.22433 1.74944 1.39473 1.19024 0.83639 1.04954 0.93703 1.20583 0.93897 1.03532 0.95498 1.20949 0.93504 1.01287 0.97967 1.19800 0.96350 1.01260 0.92286 1.20489 0.88110 0.92249 1.00545 1.58570 1.09859 1.12086 1.58075 1.20357 0.91240 0.99566 0.98372 1.18595 0.93249 1.01402 0.85804 1.41494 1.15010 1.44628 1.09608 1.19389 1.41371 1.02171 0.87201 0.90751 1.26199 0.97829 0.94390 1.00202 1.70108 1.39491 1.11341 1.28974 0.85156 0.78156 0.78627 0.77880 1.19862 1.18609 1.18376 1.22283 0.81132 0.83996 0.91474 1.90490 1.56553 1.63906 1.35353 0.87389 0.89258 0.93207 0.82545 0.82135 0.92212 0.92248 0.83705 0.83245 0.88069 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 9.15 71.98 0.66 -3.25 16 2 C 0.08 3.35 3.68 29.87 0.11 3.46 16 3 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 4 O -0.31 -13.21 10.09 -92.77 -0.94 -14.15 16 5 C 0.03 1.43 6.45 22.62 0.15 1.58 16 6 C -0.12 -3.95 10.00 22.33 0.22 -3.73 16 7 C -0.12 -3.58 9.69 22.31 0.22 -3.36 16 8 C -0.10 -3.42 5.39 -19.85 -0.11 -3.53 16 9 C 0.12 3.27 6.91 85.55 0.59 3.86 16 10 N -0.85 -20.49 9.61 -190.00 -1.83 -22.31 16 11 C -0.07 -3.40 7.35 22.36 0.16 -3.24 16 12 C 0.11 5.30 5.47 38.25 0.21 5.51 16 13 N -0.40 -22.37 2.75 -458.10 -1.26 -23.63 16 14 C -0.37 -22.09 8.33 84.02 0.70 -21.39 16 15 H 0.07 4.55 7.84 -2.91 -0.02 4.53 16 16 C 0.02 1.11 3.51 84.90 0.30 1.41 16 17 N -0.87 -48.12 11.45 21.65 0.25 -47.87 16 18 Si 0.98 42.58 29.58 68.60 2.03 44.60 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 C 0.42 22.43 7.33 87.63 0.64 23.08 16 23 O -0.58 -33.79 16.15 -3.03 -0.05 -33.84 16 24 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 25 H 0.09 2.85 7.85 -2.39 -0.02 2.83 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.06 1.33 8.08 -2.38 -0.02 1.31 16 30 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.35 7.21 8.98 -89.69 -0.81 6.40 16 32 H 0.35 6.44 9.08 -89.70 -0.81 5.63 16 33 H 0.10 5.16 6.11 -2.91 -0.02 5.14 16 34 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.79 289.09 1.58 -71.21 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.47 Total: 25.61 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 3.85 Total: 0.38 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -2.84 Total: -93.82 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.99 Total: -47.99 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.79 1.58 -71.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074336187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.603 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds