Wall clock time and date at job start Mon Mar 30 2020 05:10:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09008 * 109.44562 * 2 1
4 4 O 1.43003 * 109.44809 * 119.93753 * 2 1 3
5 5 C 1.35930 * 116.69800 * 166.33905 * 4 2 1
6 6 C 1.38414 * 120.67727 * 147.27072 * 5 4 2
7 7 C 1.38295 * 119.87903 * 180.09457 * 6 5 4
8 8 C 1.38341 * 120.28446 * 359.95211 * 7 6 5
9 9 C 1.50693 * 119.89298 * 179.97438 * 8 7 6
10 10 N 1.46903 * 109.47391 * 270.02114 * 9 8 7
11 11 C 1.38224 * 120.21732 * 359.97438 * 8 7 6
12 12 C 1.38633 * 119.80484 * 0.02562 * 11 8 7
13 13 N 1.39945 * 120.74682 * 180.08120 * 12 11 8
14 14 C 1.37104 * 120.49389 * 15.42503 * 13 12 11
15 15 H 1.07995 * 120.00084 * 221.94598 * 14 13 12
16 16 C 1.38871 * 119.99690 * 41.94631 * 14 13 12
17 17 N 1.31434 * 120.00230 * 15.53452 * 16 14 13
18 18 Si 1.86803 * 119.99933 * 195.53532 * 16 14 13
19 19 H 1.48508 * 109.46640 * 270.00060 * 18 16 14
20 20 H 1.48499 * 109.47015 * 29.99723 * 18 16 14
21 21 H 1.48500 * 109.47421 * 150.00243 * 18 16 14
22 22 C 1.35081 * 119.01178 * 195.69803 * 13 12 11
23 23 O 1.21281 * 120.12825 * 181.42064 * 22 13 12
24 24 H 1.08999 * 109.46707 * 300.06215 * 1 2 3
25 25 H 1.08999 * 109.46925 * 60.05544 * 1 2 3
26 26 H 1.08995 * 109.47283 * 180.02562 * 1 2 3
27 27 H 1.07999 * 120.05898 * 0.09015 * 6 5 4
28 28 H 1.08000 * 119.86318 * 179.97438 * 7 6 5
29 29 H 1.09007 * 109.47168 * 30.01891 * 9 8 7
30 30 H 1.08999 * 109.47694 * 150.01824 * 9 8 7
31 31 H 1.00900 * 110.99739 * 56.04033 * 10 9 8
32 32 H 1.00887 * 111.00183 * 179.97438 * 10 9 8
33 33 H 1.08002 * 120.09088 * 180.02562 * 11 8 7
34 34 H 0.97000 * 119.99965 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8929 1.0279 0.0000
4 8 2.0061 -0.6729 1.1685
5 6 3.3222 -1.0128 1.1839
6 6 4.0349 -1.0237 2.3705
7 6 5.3737 -1.3702 2.3668
8 6 6.0039 -1.7071 1.1823
9 6 7.4633 -2.0827 1.1884
10 7 8.2801 -0.8771 0.9955
11 6 5.2994 -1.7003 -0.0069
12 6 3.9570 -1.3540 -0.0106
13 7 3.2244 -1.3421 -1.2029
14 6 3.7109 -1.9627 -2.3246
15 1 3.6193 -1.4849 -3.2887
16 6 4.3213 -3.2058 -2.2207
17 7 4.1695 -3.9234 -1.1301
18 14 5.3582 -3.8578 -3.6311
19 1 4.4980 -4.6343 -4.5600
20 1 5.9733 -2.7200 -4.3605
21 1 6.4271 -4.7377 -3.0942
22 6 2.0335 -0.7054 -1.2338
23 8 1.3699 -0.7045 -2.2490
24 1 -0.3633 0.5148 0.8894
25 1 -0.3633 0.5130 -0.8905
26 1 -0.3633 -1.0276 0.0005
27 1 3.5463 -0.7620 3.2974
28 1 5.9296 -1.3783 3.2927
29 1 7.7158 -2.5437 2.1434
30 1 7.6604 -2.7881 0.3811
31 1 8.0684 -0.1813 1.6949
32 1 9.2634 -1.1026 0.9963
33 1 5.7933 -1.9641 -0.9305
34 1 4.5956 -4.7918 -1.0578
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000074336187.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:10:52
Heat of formation + Delta-G solvation = -58.603823 kcal
Electronic energy + Delta-G solvation = -20284.052475 eV
Core-core repulsion = 17181.316067 eV
Total energy + Delta-G solvation = -3102.736408 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.27079 -39.65802 -38.74200 -37.08501 -35.13706 -33.92779 -32.75411 -30.91297
-30.01043 -27.89951 -25.60462 -24.83784 -23.65806 -22.70662 -20.49812 -19.75877
-19.19356 -17.94861 -17.47256 -17.09010 -16.73533 -15.88877 -15.74424 -15.58693
-15.39238 -15.18380 -14.84931 -14.61575 -14.03776 -13.90944 -13.47723 -13.35062
-13.20849 -13.00029 -12.82545 -12.72854 -12.44971 -12.21874 -11.91273 -11.77977
-11.34085 -10.82760 -10.48449 -9.55049 -9.23206 -8.76089 -8.29195 -6.35836
0.35348 0.61131 1.28909 1.33218 1.46257 1.70845 2.04698 2.33445
2.71032 2.79172 3.11070 3.41501 3.90344 3.93336 3.94856 4.00128
4.10792 4.33849 4.54720 4.56164 4.76105 4.78451 4.80908 4.94775
5.11084 5.17078 5.28659 5.35325 5.53717 5.77576 5.96309 6.00776
6.14118 6.30076 6.48220 6.73842 6.85904 7.13084 7.60462 8.54212
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.014117 B = 0.011725 C = 0.007034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1982.976331 B = 2387.574464 C = 3979.536661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.082 3.918
3 H 0.105 0.895
4 O -0.313 6.313
5 C 0.033 3.967
6 C -0.116 4.116
7 C -0.118 4.118
8 C -0.096 4.096
9 C 0.116 3.884
10 N -0.853 5.853
11 C -0.073 4.073
12 C 0.106 3.894
13 N -0.397 5.397
14 C -0.375 4.375
15 H 0.075 0.925
16 C 0.020 3.980
17 N -0.866 5.866
18 Si 0.981 3.019
19 H -0.273 1.273
20 H -0.262 1.262
21 H -0.260 1.260
22 C 0.420 3.580
23 O -0.580 6.580
24 H 0.107 0.893
25 H 0.089 0.911
26 H 0.049 0.951
27 H 0.157 0.843
28 H 0.161 0.839
29 H 0.060 0.940
30 H 0.059 0.941
31 H 0.349 0.651
32 H 0.353 0.647
33 H 0.101 0.899
34 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.904 4.746 10.027 12.567
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.022 3.978
3 H 0.123 0.877
4 O -0.229 6.229
5 C -0.013 4.013
6 C -0.135 4.135
7 C -0.137 4.137
8 C -0.097 4.097
9 C -0.014 4.014
10 N -0.386 5.386
11 C -0.095 4.095
12 C 0.009 3.991
13 N -0.107 5.107
14 C -0.501 4.501
15 H 0.092 0.908
16 C -0.186 4.186
17 N -0.499 5.499
18 Si 0.802 3.198
19 H -0.199 1.199
20 H -0.186 1.186
21 H -0.184 1.184
22 C 0.211 3.789
23 O -0.463 6.463
24 H 0.126 0.874
25 H 0.107 0.893
26 H 0.068 0.932
27 H 0.175 0.825
28 H 0.179 0.821
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.163 0.837
32 H 0.168 0.832
33 H 0.119 0.881
34 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 5.080 4.555 8.958 11.260
hybrid contribution 0.564 -0.898 -0.537 1.188
sum 5.644 3.657 8.421 10.777
Atomic orbital electron populations
1.21617 0.87822 1.03294 1.04824 1.22675 0.98870 0.95769 0.80441
0.87715 1.86041 1.22433 1.74944 1.39473 1.19024 0.83639 1.04954
0.93703 1.20583 0.93897 1.03532 0.95498 1.20949 0.93504 1.01287
0.97967 1.19800 0.96350 1.01260 0.92286 1.20489 0.88110 0.92249
1.00545 1.58570 1.09859 1.12086 1.58075 1.20357 0.91240 0.99566
0.98372 1.18595 0.93249 1.01402 0.85804 1.41494 1.15010 1.44628
1.09608 1.19389 1.41371 1.02171 0.87201 0.90751 1.26199 0.97829
0.94390 1.00202 1.70108 1.39491 1.11341 1.28974 0.85156 0.78156
0.78627 0.77880 1.19862 1.18609 1.18376 1.22283 0.81132 0.83996
0.91474 1.90490 1.56553 1.63906 1.35353 0.87389 0.89258 0.93207
0.82545 0.82135 0.92212 0.92248 0.83705 0.83245 0.88069 0.91257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.91 9.15 71.98 0.66 -3.25 16
2 C 0.08 3.35 3.68 29.87 0.11 3.46 16
3 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16
4 O -0.31 -13.21 10.09 -92.77 -0.94 -14.15 16
5 C 0.03 1.43 6.45 22.62 0.15 1.58 16
6 C -0.12 -3.95 10.00 22.33 0.22 -3.73 16
7 C -0.12 -3.58 9.69 22.31 0.22 -3.36 16
8 C -0.10 -3.42 5.39 -19.85 -0.11 -3.53 16
9 C 0.12 3.27 6.91 85.55 0.59 3.86 16
10 N -0.85 -20.49 9.61 -190.00 -1.83 -22.31 16
11 C -0.07 -3.40 7.35 22.36 0.16 -3.24 16
12 C 0.11 5.30 5.47 38.25 0.21 5.51 16
13 N -0.40 -22.37 2.75 -458.10 -1.26 -23.63 16
14 C -0.37 -22.09 8.33 84.02 0.70 -21.39 16
15 H 0.07 4.55 7.84 -2.91 -0.02 4.53 16
16 C 0.02 1.11 3.51 84.90 0.30 1.41 16
17 N -0.87 -48.12 11.45 21.65 0.25 -47.87 16
18 Si 0.98 42.58 29.58 68.60 2.03 44.60 16
19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
22 C 0.42 22.43 7.33 87.63 0.64 23.08 16
23 O -0.58 -33.79 16.15 -3.03 -0.05 -33.84 16
24 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16
25 H 0.09 2.85 7.85 -2.39 -0.02 2.83 16
26 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16
27 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16
28 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16
29 H 0.06 1.33 8.08 -2.38 -0.02 1.31 16
30 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16
31 H 0.35 7.21 8.98 -89.69 -0.81 6.40 16
32 H 0.35 6.44 9.08 -89.70 -0.81 5.63 16
33 H 0.10 5.16 6.11 -2.91 -0.02 5.14 16
34 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16
Total: -1.00 -72.79 289.09 1.58 -71.21
By element:
Atomic # 1 Polarization: 26.08 SS G_CDS: -0.47 Total: 25.61 kcal
Atomic # 6 Polarization: -3.47 SS G_CDS: 3.85 Total: 0.38 kcal
Atomic # 7 Polarization: -90.98 SS G_CDS: -2.84 Total: -93.82 kcal
Atomic # 8 Polarization: -47.00 SS G_CDS: -0.99 Total: -47.99 kcal
Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal
Total: -72.79 1.58 -71.21 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074336187.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.603 kcal
(2) G-P(sol) polarization free energy of solvation -72.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.188 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds