Wall clock time and date at job start Mon Mar 30 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.44221 * 2 1 4 4 O 1.43000 * 109.44009 * 240.07065 * 2 1 3 5 5 C 1.35928 * 116.70181 * 286.29877 * 4 2 1 6 6 C 1.38416 * 120.68518 * 147.27904 * 5 4 2 7 7 C 1.38295 * 119.88034 * 180.02562 * 6 5 4 8 8 C 1.38346 * 120.28330 * 359.96619 * 7 6 5 9 9 C 1.50697 * 119.88779 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.47212 * 270.02030 * 9 8 7 11 11 C 1.38214 * 120.21971 * 359.97438 * 8 7 6 12 12 C 1.38639 * 119.80656 * 0.02562 * 11 8 7 13 13 N 1.39938 * 120.74283 * 180.02562 * 12 11 8 14 14 C 1.37094 * 120.49726 * 15.41338 * 13 12 11 15 15 H 1.07994 * 120.00588 * 221.93075 * 14 13 12 16 16 C 1.38880 * 119.99633 * 41.93447 * 14 13 12 17 17 N 1.31430 * 119.99858 * 15.55124 * 16 14 13 18 18 Si 1.86803 * 119.99951 * 195.54768 * 16 14 13 19 19 H 1.48504 * 109.46991 * 89.99954 * 18 16 14 20 20 H 1.48496 * 109.47171 * 209.99571 * 18 16 14 21 21 H 1.48502 * 109.47171 * 330.00182 * 18 16 14 22 22 C 1.35082 * 119.01051 * 195.39923 * 13 12 11 23 23 O 1.21287 * 120.12584 * 181.72357 * 22 13 12 24 24 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47330 * 299.92935 * 1 2 3 26 26 H 1.09003 * 109.47667 * 59.92810 * 1 2 3 27 27 H 1.07998 * 120.05631 * 0.04146 * 6 5 4 28 28 H 1.07999 * 119.85833 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47271 * 30.01891 * 9 8 7 30 30 H 1.09000 * 109.46980 * 150.02014 * 9 8 7 31 31 H 1.00896 * 111.00056 * 180.02562 * 10 9 8 32 32 H 1.00903 * 110.99818 * 303.95795 * 10 9 8 33 33 H 1.08004 * 120.09804 * 179.97438 * 11 8 7 34 34 H 0.97002 * 120.00036 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0059 -0.6728 -1.1686 5 6 1.8878 -2.0268 -1.1846 6 6 1.6609 -2.7022 -2.3713 7 6 1.5430 -4.0801 -2.3682 8 6 1.6515 -4.7869 -1.1839 9 6 1.5209 -6.2882 -1.1908 10 7 0.1124 -6.6581 -0.9980 11 6 1.8792 -4.1207 0.0055 12 6 1.9985 -2.7395 0.0098 13 7 2.2297 -2.0452 1.2026 14 6 2.6522 -2.7106 2.3243 15 1 2.2312 -2.4657 3.2882 16 6 3.6216 -3.6997 2.2210 17 7 4.3500 -3.7946 1.1311 18 14 3.8903 -4.8950 3.6311 19 1 3.0154 -6.0810 3.4483 20 1 5.3111 -5.3264 3.6505 21 1 3.5579 -4.2280 4.9156 22 6 2.0307 -0.7094 1.2322 23 8 2.2548 -0.0829 2.2462 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5127 0.8906 26 1 -0.3634 0.5149 -0.8893 27 1 1.5764 -2.1540 -3.2980 28 1 1.3655 -4.6066 -3.2943 29 1 1.8717 -6.6791 -2.1459 30 1 2.1208 -6.7088 -0.3837 31 1 -0.0015 -7.6607 -0.9983 32 1 -0.2551 -6.2531 -0.1500 33 1 1.9632 -4.6745 0.9289 34 1 5.0269 -4.4857 1.0588 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074336191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:56 Heat of formation + Delta-G solvation = -59.705154 kcal Electronic energy + Delta-G solvation = -20431.299618 eV Core-core repulsion = 17328.515453 eV Total energy + Delta-G solvation = -3102.784165 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.34837 -39.61752 -38.78593 -37.02599 -35.13440 -33.95240 -32.62506 -30.92310 -30.09555 -27.77923 -25.90477 -24.73656 -23.74063 -22.79688 -20.45153 -19.55757 -19.20992 -17.90386 -17.06211 -16.97834 -16.70876 -16.30170 -15.80381 -15.66531 -15.53321 -15.10355 -14.92547 -14.69333 -13.98431 -13.81894 -13.55663 -13.38017 -13.18605 -13.11876 -12.85674 -12.73886 -12.37049 -12.26513 -11.91020 -11.82196 -11.33846 -10.82655 -10.48332 -9.64418 -9.22270 -8.76241 -8.28952 -6.37689 0.38239 0.60046 1.27362 1.31613 1.44405 1.72340 2.04573 2.34977 2.72324 2.79561 3.09788 3.39490 3.88288 3.93303 3.96659 4.03342 4.06531 4.35752 4.53837 4.60085 4.65967 4.77439 4.79614 4.90929 5.02259 5.17656 5.27404 5.35247 5.53163 5.79732 5.96186 6.00299 6.13418 6.19352 6.48560 6.64907 6.84440 7.12260 7.59937 8.52648 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.012607 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.586789 B = 2220.451629 C = 3759.643505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.082 3.918 3 H 0.154 0.846 4 O -0.313 6.313 5 C 0.039 3.961 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.095 4.095 9 C 0.115 3.885 10 N -0.843 5.843 11 C -0.086 4.086 12 C 0.111 3.889 13 N -0.393 5.393 14 C -0.375 4.375 15 H 0.075 0.925 16 C 0.019 3.981 17 N -0.866 5.866 18 Si 0.982 3.018 19 H -0.254 1.254 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.424 3.576 23 O -0.589 6.589 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.097 0.903 30 H 0.022 0.978 31 H 0.353 0.647 32 H 0.340 0.660 33 H 0.104 0.896 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 -4.807 -7.851 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.171 0.829 4 O -0.228 6.228 5 C -0.007 4.007 6 C -0.138 4.138 7 C -0.126 4.126 8 C -0.096 4.096 9 C -0.016 4.016 10 N -0.374 5.374 11 C -0.108 4.108 12 C 0.015 3.985 13 N -0.103 5.103 14 C -0.501 4.501 15 H 0.093 0.907 16 C -0.187 4.187 17 N -0.498 5.498 18 Si 0.804 3.196 19 H -0.178 1.178 20 H -0.197 1.197 21 H -0.195 1.195 22 C 0.215 3.785 23 O -0.473 6.473 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.115 0.885 30 H 0.040 0.960 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.844 -4.078 -8.179 11.418 hybrid contribution 1.006 -0.720 2.302 2.613 sum -5.838 -4.798 -5.877 9.573 Atomic orbital electron populations 1.22234 0.91156 1.03087 1.05217 1.22894 0.97659 0.97017 0.80161 0.82893 1.86096 1.80173 1.16774 1.39802 1.18943 1.05925 0.82303 0.93560 1.20608 1.02907 0.94626 0.95659 1.20901 1.01178 0.92354 0.98177 1.19760 1.01291 0.96250 0.92323 1.20545 0.89582 0.89947 1.01480 1.58762 1.16951 1.16551 1.45089 1.20386 1.00604 0.91616 0.98200 1.18493 1.00796 0.93584 0.85645 1.41434 1.54217 1.05097 1.09520 1.19412 1.23220 1.20247 0.87259 0.90722 1.26220 0.92673 0.99671 1.00168 1.70118 1.18515 1.32112 1.29078 0.85118 0.78290 0.78291 0.77922 1.17793 1.19728 1.19541 1.22222 0.81849 0.83085 0.91317 1.90510 1.55068 1.65948 1.35803 0.93290 0.89999 0.87247 0.82762 0.82672 0.88499 0.95981 0.83343 0.84798 0.87827 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.30 71.98 0.67 -4.37 16 2 C 0.08 3.27 3.81 29.86 0.11 3.39 16 3 H 0.15 5.33 8.14 -2.39 -0.02 5.31 16 4 O -0.31 -13.01 10.18 -92.74 -0.94 -13.95 16 5 C 0.04 1.66 5.85 22.62 0.13 1.79 16 6 C -0.12 -4.11 10.00 22.33 0.22 -3.89 16 7 C -0.11 -3.39 9.69 22.31 0.22 -3.18 16 8 C -0.09 -3.37 5.39 -19.85 -0.11 -3.48 16 9 C 0.11 3.21 6.91 85.56 0.59 3.80 16 10 N -0.84 -20.26 9.61 -190.01 -1.83 -22.09 16 11 C -0.09 -3.84 7.35 22.36 0.16 -3.67 16 12 C 0.11 5.40 5.47 38.25 0.21 5.61 16 13 N -0.39 -21.52 2.75 -458.14 -1.26 -22.78 16 14 C -0.37 -21.52 8.32 84.02 0.70 -20.82 16 15 H 0.07 4.47 7.85 -2.91 -0.02 4.45 16 16 C 0.02 1.03 3.50 84.91 0.30 1.33 16 17 N -0.87 -47.19 11.45 21.65 0.25 -46.94 16 18 Si 0.98 41.25 29.58 68.60 2.03 43.28 16 19 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 C 0.42 22.27 6.87 87.62 0.60 22.87 16 23 O -0.59 -34.48 17.09 -3.05 -0.05 -34.53 16 24 H 0.05 1.68 7.81 -2.38 -0.02 1.67 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.10 2.29 8.08 -2.39 -0.02 2.27 16 30 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 31 H 0.35 6.43 9.08 -89.70 -0.81 5.62 16 32 H 0.34 8.66 8.99 -89.69 -0.81 7.85 16 33 H 0.10 4.97 6.11 -2.91 -0.02 4.95 16 34 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -70.29 289.29 1.53 -68.75 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.47 Total: 28.87 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 3.81 Total: -0.61 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -2.84 Total: -91.81 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.00 Total: -48.48 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -70.29 1.53 -68.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074336191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.047 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds