Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47191 * 2 1 4 4 N 1.46504 * 109.46743 * 120.00144 * 2 1 3 5 5 C 1.36942 * 119.99486 * 302.01832 * 4 2 1 6 6 H 1.08001 * 119.99979 * 41.23898 * 5 4 2 7 7 C 1.38811 * 119.99398 * 221.22695 * 5 4 2 8 8 N 1.31626 * 119.99591 * 211.15212 * 7 5 4 9 9 Si 1.86800 * 120.00272 * 31.16179 * 7 5 4 10 10 H 1.48501 * 109.47233 * 84.51668 * 9 7 5 11 11 H 1.48505 * 109.46847 * 204.52107 * 9 7 5 12 12 H 1.48498 * 109.47049 * 324.51478 * 9 7 5 13 13 S 1.65597 * 120.00063 * 121.74531 * 4 2 1 14 14 O 1.42101 * 106.40208 * 29.94595 * 13 4 2 15 15 O 1.42102 * 106.39860 * 162.86394 * 13 4 2 16 16 N 1.65600 * 107.21837 * 276.40647 * 13 4 2 17 17 C 1.47019 * 125.64476 * 269.69285 * 16 13 4 18 18 C 1.54316 * 107.27560 * 180.97155 * 17 16 13 19 19 C 1.55154 * 102.86408 * 22.52191 * 18 17 16 20 20 C 1.47422 * 125.64921 * 89.99947 * 16 13 4 21 21 H 1.09001 * 109.47144 * 304.33564 * 1 2 3 22 22 H 1.09003 * 109.46978 * 64.32859 * 1 2 3 23 23 H 1.08994 * 109.47405 * 184.32884 * 1 2 3 24 24 H 1.09001 * 109.47293 * 239.99806 * 2 1 3 25 25 H 1.09004 * 109.46682 * 182.75595 * 3 2 1 26 26 H 1.08997 * 109.47088 * 302.75744 * 3 2 1 27 27 H 1.08997 * 109.47177 * 62.75949 * 3 2 1 28 28 H 0.97002 * 119.99342 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.88555 * 300.51033 * 17 16 13 30 30 H 1.08993 * 109.88737 * 61.67795 * 17 16 13 31 31 H 1.08999 * 110.92056 * 264.10824 * 18 17 16 32 32 H 1.08993 * 110.59456 * 140.78561 * 18 17 16 33 33 H 1.09000 * 111.01027 * 206.23239 * 19 18 17 34 34 H 1.09002 * 111.03997 * 82.39648 * 19 18 17 35 35 H 1.08998 * 110.36464 * 274.67274 * 20 16 13 36 36 H 1.09005 * 110.36628 * 36.88908 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6536 -0.2474 2.4395 6 1 0.6381 0.0715 2.6227 7 6 2.5891 -0.2081 3.4643 8 7 2.2078 -0.3913 4.7107 9 14 4.3890 0.1049 3.0744 10 1 4.6277 1.5674 2.9789 11 1 5.2354 -0.4656 4.1531 12 1 4.7346 -0.5387 1.7815 13 16 3.0056 -2.0114 1.0447 14 8 3.7426 -1.8259 -0.1561 15 8 3.6198 -2.2007 2.3121 16 7 2.0304 -3.3266 0.7964 17 6 1.4724 -4.1900 1.8473 18 6 0.6520 -5.2932 1.1465 19 6 1.2647 -5.3267 -0.2786 20 6 1.5833 -3.8292 -0.5154 21 1 -0.3633 0.5796 0.8486 22 1 -0.3633 0.4452 -0.9263 23 1 -0.3634 -1.0247 0.0776 24 1 1.8934 -0.5139 -0.8900 25 1 3.1290 1.4428 -0.0494 26 1 1.6369 1.9704 -0.8642 27 1 1.7177 1.9418 0.9137 28 1 2.8615 -0.3635 5.4268 29 1 2.2797 -4.6377 2.4270 30 1 0.8235 -3.6068 2.5007 31 1 -0.4041 -5.0266 1.1060 32 1 0.7900 -6.2509 1.6482 33 1 0.5405 -5.6919 -1.0069 34 1 2.1738 -5.9276 -0.2997 35 1 0.6889 -3.2978 -0.8404 36 1 2.3776 -3.7209 -1.2540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080214559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -63.330837 kcal Electronic energy + Delta-G solvation = -19996.907221 eV Core-core repulsion = 17029.409786 eV Total energy + Delta-G solvation = -2967.497435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -37.71717 -36.66170 -36.07444 -34.63706 -32.60097 -30.23012 -30.11096 -28.50319 -26.46478 -24.53795 -21.90192 -20.81237 -20.06298 -19.11625 -17.90276 -16.52273 -15.95561 -15.45248 -15.08769 -14.48709 -13.56725 -13.48387 -13.28819 -13.10100 -13.00381 -12.83656 -12.40570 -12.13785 -11.84640 -11.55535 -11.45222 -11.08285 -10.99186 -10.95175 -10.84230 -10.69474 -10.67777 -10.45094 -10.41509 -10.09126 -9.92903 -9.20200 -8.85027 -8.19824 -7.92159 -6.51245 -4.01324 1.75226 3.36385 3.48367 3.55558 3.98793 4.46398 4.69740 4.85533 4.94265 5.05504 5.19343 5.58530 5.64173 5.68041 5.81779 5.85291 5.92780 5.97818 5.99052 6.08932 6.22565 6.25867 6.31100 6.40487 6.46949 6.51881 6.56984 6.80521 6.88121 6.98762 7.16516 7.28096 7.80040 8.27005 9.04640 9.17556 10.50544 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.011503 C = 0.009814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.628929 B = 2433.503515 C = 2852.322430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 C -0.148 4.148 4 N -0.838 5.838 5 C -0.290 4.290 6 H 0.094 0.906 7 C 0.089 3.911 8 N -0.811 5.811 9 Si 0.947 3.053 10 H -0.302 1.302 11 H -0.285 1.285 12 H -0.303 1.303 13 S 2.672 3.328 14 O -1.018 7.018 15 O -0.982 6.982 16 N -1.021 6.021 17 C 0.125 3.875 18 C -0.129 4.129 19 C -0.131 4.131 20 C 0.117 3.883 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.280 0.720 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -4.450 -7.666 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 C -0.208 4.208 4 N -0.667 5.667 5 C -0.435 4.435 6 H 0.111 0.889 7 C -0.127 4.127 8 N -0.446 5.446 9 Si 0.780 3.220 10 H -0.232 1.232 11 H -0.210 1.210 12 H -0.231 1.231 13 S 2.700 3.300 14 O -1.003 7.003 15 O -0.966 6.966 16 N -0.855 5.855 17 C -0.001 4.001 18 C -0.167 4.167 19 C -0.170 4.170 20 C -0.010 4.010 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.784 -4.629 -7.564 9.642 hybrid contribution 0.617 -0.162 -0.007 0.638 sum -3.167 -4.791 -7.570 9.502 Atomic orbital electron populations 1.22089 0.96266 1.01707 1.01142 1.20649 0.93980 0.93773 0.87285 1.22012 1.00897 0.96071 1.01788 1.53554 1.69412 1.33950 1.09782 1.18564 0.97661 1.42949 0.84346 0.88873 1.25761 1.00100 0.92304 0.94539 1.69901 1.37215 1.36959 1.00554 0.85721 0.84329 0.73912 0.78038 1.23232 1.21048 1.23129 1.08440 0.77413 0.71833 0.72313 1.93372 1.72294 1.85566 1.49031 1.93104 1.75228 1.84817 1.43419 1.60135 1.67934 1.46486 1.10909 1.21517 0.96695 0.91433 0.90436 1.22635 0.99666 0.98681 0.95757 1.22762 1.00704 0.96474 0.97023 1.21834 0.98985 0.93604 0.86538 0.91557 0.93333 0.93079 0.91176 0.93191 0.93099 0.90947 0.90970 0.92555 0.91424 0.91040 0.91069 0.90845 0.91292 0.92600 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.02 37.16 0.34 -2.22 16 2 C 0.15 2.99 3.19 -67.93 -0.22 2.77 16 3 C -0.15 -2.74 9.23 37.16 0.34 -2.39 16 4 N -0.84 -19.88 2.34 -53.42 -0.12 -20.00 16 5 C -0.29 -7.46 8.44 -15.06 -0.13 -7.59 16 6 H 0.09 2.42 7.09 -52.49 -0.37 2.05 16 7 C 0.09 2.47 4.37 -17.43 -0.08 2.39 16 8 N -0.81 -22.74 13.97 55.49 0.78 -21.97 16 9 Si 0.95 25.46 25.20 -169.99 -4.28 21.18 16 10 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 11 H -0.28 -7.69 7.11 56.52 0.40 -7.28 16 12 H -0.30 -8.51 5.03 56.69 0.28 -8.23 16 13 S 2.67 67.04 4.54 -107.50 -0.49 66.55 16 14 O -1.02 -26.91 16.05 -57.17 -0.92 -27.82 16 15 O -0.98 -27.54 11.32 -57.17 -0.65 -28.19 16 16 N -1.02 -20.96 3.76 -111.42 -0.42 -21.38 16 17 C 0.13 2.31 6.98 -3.07 -0.02 2.29 16 18 C -0.13 -1.75 6.95 -24.90 -0.17 -1.93 16 19 C -0.13 -1.72 7.08 -24.58 -0.17 -1.89 16 20 C 0.12 1.93 7.11 -2.53 -0.02 1.91 16 21 H 0.07 1.15 7.17 -51.93 -0.37 0.78 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.36 7.13 -51.93 -0.37 0.99 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.37 7.62 -51.93 -0.40 0.98 16 28 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.16 7.78 -51.93 -0.40 0.76 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -31.15 293.46 -7.63 -38.78 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.82 Total: -4.92 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.13 Total: -6.65 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 0.23 Total: -63.35 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -1.57 Total: -56.01 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.28 Total: 21.18 kcal Atomic # 16 Polarization: 67.04 SS G_CDS: -0.49 Total: 66.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.15 -7.63 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080214559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.550 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds