Wall clock time and date at job start Mon Mar 30 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47191 * 2 1 4 4 N 1.46504 * 109.46743 * 120.00144 * 2 1 3 5 5 C 1.36942 * 119.99486 * 302.01832 * 4 2 1 6 6 H 1.08001 * 119.99979 * 41.23898 * 5 4 2 7 7 C 1.38811 * 119.99398 * 221.22695 * 5 4 2 8 8 N 1.31626 * 119.99591 * 211.15212 * 7 5 4 9 9 Si 1.86800 * 120.00272 * 31.16179 * 7 5 4 10 10 H 1.48501 * 109.47233 * 84.51668 * 9 7 5 11 11 H 1.48505 * 109.46847 * 204.52107 * 9 7 5 12 12 H 1.48498 * 109.47049 * 324.51478 * 9 7 5 13 13 S 1.65597 * 120.00063 * 121.74531 * 4 2 1 14 14 O 1.42101 * 106.40208 * 29.94595 * 13 4 2 15 15 O 1.42102 * 106.39860 * 162.86394 * 13 4 2 16 16 N 1.65600 * 107.21837 * 276.40647 * 13 4 2 17 17 C 1.47019 * 125.64476 * 269.69285 * 16 13 4 18 18 C 1.54316 * 107.27560 * 180.97155 * 17 16 13 19 19 C 1.55154 * 102.86408 * 22.52191 * 18 17 16 20 20 C 1.47422 * 125.64921 * 89.99947 * 16 13 4 21 21 H 1.09001 * 109.47144 * 304.33564 * 1 2 3 22 22 H 1.09003 * 109.46978 * 64.32859 * 1 2 3 23 23 H 1.08994 * 109.47405 * 184.32884 * 1 2 3 24 24 H 1.09001 * 109.47293 * 239.99806 * 2 1 3 25 25 H 1.09004 * 109.46682 * 182.75595 * 3 2 1 26 26 H 1.08997 * 109.47088 * 302.75744 * 3 2 1 27 27 H 1.08997 * 109.47177 * 62.75949 * 3 2 1 28 28 H 0.97002 * 119.99342 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.88555 * 300.51033 * 17 16 13 30 30 H 1.08993 * 109.88737 * 61.67795 * 17 16 13 31 31 H 1.08999 * 110.92056 * 264.10824 * 18 17 16 32 32 H 1.08993 * 110.59456 * 140.78561 * 18 17 16 33 33 H 1.09000 * 111.01027 * 206.23239 * 19 18 17 34 34 H 1.09002 * 111.03997 * 82.39648 * 19 18 17 35 35 H 1.08998 * 110.36464 * 274.67274 * 20 16 13 36 36 H 1.09005 * 110.36628 * 36.88908 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6536 -0.2474 2.4395 6 1 0.6381 0.0715 2.6227 7 6 2.5891 -0.2081 3.4643 8 7 2.2078 -0.3913 4.7107 9 14 4.3890 0.1049 3.0744 10 1 4.6277 1.5674 2.9789 11 1 5.2354 -0.4656 4.1531 12 1 4.7346 -0.5387 1.7815 13 16 3.0056 -2.0114 1.0447 14 8 3.7426 -1.8259 -0.1561 15 8 3.6198 -2.2007 2.3121 16 7 2.0304 -3.3266 0.7964 17 6 1.4724 -4.1900 1.8473 18 6 0.6520 -5.2932 1.1465 19 6 1.2647 -5.3267 -0.2786 20 6 1.5833 -3.8292 -0.5154 21 1 -0.3633 0.5796 0.8486 22 1 -0.3633 0.4452 -0.9263 23 1 -0.3634 -1.0247 0.0776 24 1 1.8934 -0.5139 -0.8900 25 1 3.1290 1.4428 -0.0494 26 1 1.6369 1.9704 -0.8642 27 1 1.7177 1.9418 0.9137 28 1 2.8615 -0.3635 5.4268 29 1 2.2797 -4.6377 2.4270 30 1 0.8235 -3.6068 2.5007 31 1 -0.4041 -5.0266 1.1060 32 1 0.7900 -6.2509 1.6482 33 1 0.5405 -5.6919 -1.0069 34 1 2.1738 -5.9276 -0.2997 35 1 0.6889 -3.2978 -0.8404 36 1 2.3776 -3.7209 -1.2540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080214559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:46 Heat of formation + Delta-G solvation = -85.661043 kcal Electronic energy + Delta-G solvation = -19997.875532 eV Core-core repulsion = 17029.409786 eV Total energy + Delta-G solvation = -2968.465745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.08319 -38.39614 -38.18712 -36.75692 -34.54944 -31.88179 -31.62721 -29.82225 -27.86315 -26.48822 -23.38403 -22.01090 -21.71301 -21.09055 -19.66232 -18.45853 -17.64786 -17.05605 -16.92250 -16.43710 -15.30033 -15.08610 -15.04765 -14.81847 -14.56951 -14.21647 -14.11695 -13.62693 -13.51108 -13.41292 -13.11751 -12.95164 -12.71276 -12.64940 -12.41260 -12.25440 -12.10722 -12.02356 -11.94163 -11.64214 -11.52798 -11.24636 -10.86833 -9.85857 -9.80450 -8.59813 -6.07054 -0.18045 1.18991 1.30312 1.39911 2.10952 2.44788 2.76544 2.92834 3.46553 3.73844 3.98573 4.06042 4.13713 4.39299 4.39603 4.45697 4.61183 4.65297 4.74787 4.95814 4.96361 4.98222 5.01447 5.06967 5.10165 5.14024 5.25729 5.30335 5.41266 5.56043 5.60905 5.67690 5.94478 6.22456 7.00874 7.21422 8.46792 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.011503 C = 0.009814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.628929 B = 2433.503515 C = 2852.322430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.135 3.865 3 C -0.149 4.149 4 N -0.851 5.851 5 C -0.284 4.284 6 H 0.090 0.910 7 C 0.064 3.936 8 N -0.848 5.848 9 Si 0.952 3.048 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.321 1.321 13 S 2.701 3.299 14 O -1.034 7.034 15 O -1.015 7.015 16 N -1.027 6.027 17 C 0.116 3.884 18 C -0.116 4.116 19 C -0.120 4.120 20 C 0.103 3.897 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.280 0.720 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -5.677 -10.026 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 C -0.208 4.208 4 N -0.682 5.682 5 C -0.426 4.426 6 H 0.107 0.893 7 C -0.148 4.148 8 N -0.486 5.486 9 Si 0.786 3.214 10 H -0.213 1.213 11 H -0.221 1.221 12 H -0.251 1.251 13 S 2.725 3.275 14 O -1.018 7.018 15 O -0.999 6.999 16 N -0.865 5.865 17 C -0.010 4.010 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.022 4.022 21 H 0.074 0.926 22 H 0.104 0.896 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.560 -5.779 -9.895 12.737 hybrid contribution 1.161 0.077 0.492 1.264 sum -4.399 -5.701 -9.403 11.844 Atomic orbital electron populations 1.21991 0.93499 1.01966 1.02665 1.21066 0.96255 0.94077 0.85746 1.22037 0.99793 0.95743 1.03208 1.53501 1.69352 1.34943 1.10448 1.18378 0.96832 1.42859 0.84537 0.89286 1.25995 1.00484 0.93329 0.94966 1.69920 1.37238 1.40592 1.00809 0.85682 0.84489 0.74714 0.76518 1.21284 1.22117 1.25083 1.06264 0.77028 0.72872 0.71310 1.93360 1.72721 1.86356 1.49372 1.93078 1.76339 1.85625 1.44884 1.59547 1.67581 1.45663 1.13700 1.21719 0.96670 0.92400 0.90236 1.22630 0.99637 0.97650 0.95524 1.22786 1.01889 0.93686 0.97482 1.22238 0.99509 0.96449 0.84044 0.92621 0.89557 0.93055 0.90692 0.95122 0.88915 0.91998 0.91026 0.93887 0.93212 0.89220 0.88604 0.86873 0.91090 0.90562 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.02 71.98 0.65 -3.70 16 2 C 0.13 5.11 3.19 44.99 0.14 5.25 16 3 C -0.15 -5.25 9.23 71.98 0.66 -4.59 16 4 N -0.85 -40.11 2.34 -322.92 -0.76 -40.86 16 5 C -0.28 -14.81 8.44 84.03 0.71 -14.10 16 6 H 0.09 4.69 7.09 -2.91 -0.02 4.66 16 7 C 0.06 3.64 4.37 84.86 0.37 4.01 16 8 N -0.85 -49.06 13.97 21.65 0.30 -48.75 16 9 Si 0.95 52.27 25.20 68.60 1.73 54.00 16 10 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 11 H -0.29 -16.42 7.11 99.48 0.71 -15.71 16 12 H -0.32 -18.47 5.03 99.37 0.50 -17.97 16 13 S 2.70 135.18 4.54 -56.49 -0.26 134.93 16 14 O -1.03 -54.17 16.05 -128.00 -2.05 -56.22 16 15 O -1.02 -58.07 11.32 -128.00 -1.45 -59.52 16 16 N -1.03 -40.75 3.76 -506.44 -1.90 -42.65 16 17 C 0.12 4.11 6.98 86.73 0.61 4.71 16 18 C -0.12 -2.69 6.95 31.78 0.22 -2.47 16 19 C -0.12 -2.60 7.08 31.99 0.23 -2.37 16 20 C 0.10 3.07 7.11 86.86 0.62 3.69 16 21 H 0.05 1.82 7.17 -2.39 -0.02 1.80 16 22 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 2.75 7.13 -2.39 -0.02 2.73 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 2.30 7.62 -2.39 -0.02 2.28 16 28 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.96 7.78 -2.38 -0.02 1.94 16 Total: -1.00 -69.31 293.46 0.66 -68.65 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 0.84 Total: 0.01 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.21 Total: -9.57 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -2.35 Total: -132.27 kcal Atomic # 8 Polarization: -112.24 SS G_CDS: -3.50 Total: -115.75 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 1.73 Total: 54.00 kcal Atomic # 16 Polarization: 135.18 SS G_CDS: -0.26 Total: 134.93 kcal Total: -69.31 0.66 -68.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080214559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.006 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds