Wall clock time and date at job start Mon Mar 30 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99644 * 2 1 4 4 C 1.53004 * 109.46863 * 179.97438 * 3 2 1 5 5 C 1.53044 * 109.45958 * 174.99876 * 4 3 2 6 6 C 1.53192 * 109.30830 * 181.37104 * 5 4 3 7 7 N 1.46921 * 108.77749 * 305.36325 * 6 5 4 8 8 S 1.65606 * 120.63289 * 233.58977 * 7 6 5 9 9 O 1.42105 * 106.40008 * 336.45758 * 8 7 6 10 10 O 1.42098 * 106.40370 * 203.53944 * 8 7 6 11 11 C 1.76193 * 107.21910 * 89.99915 * 8 7 6 12 12 H 1.08002 * 120.00351 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00314 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99660 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00522 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46652 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47242 * 119.99675 * 15 13 11 18 18 H 1.48499 * 109.47269 * 239.99877 * 15 13 11 19 19 C 1.46923 * 118.74101 * 53.86380 * 7 6 5 20 20 C 1.53043 * 109.44825 * 295.05724 * 4 3 2 21 21 H 1.09004 * 109.46372 * 60.00658 * 1 2 3 22 22 H 1.08998 * 109.46869 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47124 * 300.00556 * 1 2 3 24 24 H 1.00897 * 111.00160 * 236.03886 * 2 1 3 25 25 H 1.09001 * 109.47535 * 60.00008 * 3 2 1 26 26 H 1.08996 * 109.47288 * 299.99329 * 3 2 1 27 27 H 1.08997 * 109.46219 * 55.02402 * 4 3 2 28 28 H 1.08993 * 109.49377 * 61.42042 * 5 4 3 29 29 H 1.08997 * 109.49591 * 301.31832 * 5 4 3 30 30 H 1.09003 * 109.58717 * 185.57630 * 6 5 4 31 31 H 1.09004 * 109.70720 * 65.22402 * 6 5 4 32 32 H 0.96997 * 119.99726 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.58696 * 65.92455 * 19 7 6 34 34 H 1.09000 * 109.58966 * 186.35637 * 19 7 6 35 35 H 1.08994 * 109.49766 * 298.57778 * 20 4 3 36 36 H 1.09009 * 109.49525 * 58.66912 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 6 4.0730 2.7540 -0.1252 6 6 5.6038 2.7063 -0.1586 7 7 6.0803 1.9787 1.0255 8 16 7.1969 2.6595 2.0415 9 8 7.8973 3.6300 1.2753 10 8 7.8413 1.5830 2.7086 11 6 6.3063 3.5477 3.2753 12 1 5.2266 3.5632 3.2560 13 6 6.9877 4.2231 4.2656 14 7 8.3026 4.2038 4.2894 15 14 6.0436 5.1653 5.5733 16 1 4.5858 5.0314 5.3242 17 1 6.3701 4.6143 6.9131 18 1 6.4244 6.5997 5.5217 19 6 5.5518 0.6331 1.2879 20 6 4.0175 0.7063 1.3082 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8307 -0.5262 -0.7813 25 1 1.6459 1.8948 0.8900 26 1 1.6460 1.8947 -0.8900 27 1 3.8726 0.7319 -0.8412 28 1 3.7460 3.3465 0.7293 29 1 3.7029 3.2063 -1.0452 30 1 6.0014 3.7212 -0.1484 31 1 5.9359 2.1930 -1.0611 32 1 8.7820 4.6786 4.9863 33 1 5.8776 -0.0472 0.5011 34 1 5.9150 0.2797 2.2530 35 1 3.6910 1.3181 2.1491 36 1 3.6078 -0.2989 1.4084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:17 Heat of formation + Delta-G solvation = -101.974483 kcal Electronic energy + Delta-G solvation = -18824.531424 eV Core-core repulsion = 15855.358275 eV Total energy + Delta-G solvation = -2969.173149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.51058 -35.82181 -35.23865 -33.90255 -33.06273 -32.07641 -30.54498 -27.06590 -26.07646 -24.07472 -22.79229 -21.73571 -19.95183 -18.45801 -17.42052 -16.29687 -15.76413 -14.99589 -14.87030 -14.84687 -14.52283 -14.18569 -13.71984 -13.32059 -13.18965 -12.88574 -12.63631 -12.13319 -11.98136 -11.75930 -11.66731 -11.21952 -11.20981 -10.82924 -10.69441 -10.56236 -10.43301 -10.32226 -10.23915 -9.92703 -9.78652 -9.21985 -8.83545 -8.54863 -8.10441 -6.65384 -5.26558 2.33796 3.07543 3.15823 3.23178 4.08890 4.12975 4.62029 4.68026 4.86677 5.05032 5.17425 5.23315 5.30621 5.52150 5.63079 5.65927 5.70014 5.75300 5.80893 5.90151 5.97058 6.13441 6.21180 6.25689 6.29735 6.34459 6.50282 6.62252 6.73634 6.88673 6.95852 7.23399 7.37351 7.68385 8.03888 8.93822 10.28052 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.006511 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.586986 B = 4299.440990 C = 4894.880900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.062 3.938 4 C -0.080 4.080 5 C -0.130 4.130 6 C 0.129 3.871 7 N -1.012 6.012 8 S 2.715 3.285 9 O -1.007 7.007 10 O -1.005 7.005 11 C -1.017 5.017 12 H 0.102 0.898 13 C 0.132 3.868 14 N -0.847 5.847 15 Si 0.919 3.081 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.272 1.272 19 C 0.125 3.875 20 C -0.120 4.120 21 H 0.018 0.982 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.339 0.661 25 H 0.073 0.927 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.289 0.711 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 -5.207 -8.133 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.067 4.067 4 C -0.099 4.099 5 C -0.169 4.169 6 C 0.003 3.997 7 N -0.848 5.848 8 S 2.816 3.184 9 O -0.997 6.997 10 O -0.996 6.996 11 C -1.150 5.150 12 H 0.120 0.880 13 C -0.085 4.085 14 N -0.477 5.477 15 Si 0.743 3.257 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.001 4.001 20 C -0.159 4.159 21 H 0.036 0.964 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.157 0.843 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.817 -5.338 -7.488 14.973 hybrid contribution -1.299 1.029 0.049 1.658 sum -13.115 -4.308 -7.439 15.681 Atomic orbital electron populations 1.22174 0.88173 1.01582 1.00228 1.60370 1.07322 1.14754 1.49850 1.22101 0.95252 0.88975 1.00391 1.21085 0.93115 0.96838 0.98911 1.21950 0.96561 0.96346 1.02062 1.21141 0.93173 0.97471 0.87965 1.58173 1.62542 1.25090 1.38968 1.00482 0.72225 0.72872 0.72806 1.93345 1.71814 1.61818 1.72710 1.93347 1.73950 1.57352 1.74936 1.30666 1.06275 1.48554 1.29553 0.87978 1.24756 0.94462 0.92627 0.96659 1.69913 1.06996 1.37475 1.33313 0.86163 0.80502 0.79187 0.79879 1.18650 1.19635 1.19675 1.21327 0.93357 0.83690 1.01750 1.21949 0.95424 1.01549 0.97009 0.96388 0.91646 0.91770 0.84346 0.90873 0.95514 0.91537 0.91007 0.91767 0.89228 0.92713 0.90020 0.92764 0.89265 0.91479 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.88 16 2 N -0.69 -7.07 6.28 -121.13 -0.76 -7.83 16 3 C 0.06 0.69 5.07 -3.82 -0.02 0.67 16 4 C -0.08 -1.02 2.29 -90.57 -0.21 -1.23 16 5 C -0.13 -1.81 5.36 -26.61 -0.14 -1.95 16 6 C 0.13 2.22 6.37 -3.71 -0.02 2.19 16 7 N -1.01 -20.79 3.28 -113.27 -0.37 -21.16 16 8 S 2.72 73.17 4.97 -107.50 -0.53 72.63 16 9 O -1.01 -29.65 16.73 -57.17 -0.96 -30.60 16 10 O -1.01 -29.74 16.72 -57.17 -0.96 -30.70 16 11 C -1.02 -28.22 9.75 30.60 0.30 -27.92 16 12 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 13 C 0.13 3.73 5.46 -17.81 -0.10 3.64 16 14 N -0.85 -25.19 13.19 55.43 0.73 -24.46 16 15 Si 0.92 20.79 29.54 -169.99 -5.02 15.77 16 16 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.12 2.19 6.41 -3.49 -0.02 2.17 16 20 C -0.12 -1.77 5.28 -26.38 -0.14 -1.91 16 21 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.34 3.03 8.82 -39.29 -0.35 2.68 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.66 7.13 -51.93 -0.37 1.29 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.70 7.12 -51.93 -0.37 1.33 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.03 7.72 -51.92 -0.40 0.63 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -34.35 305.20 -8.66 -43.01 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.68 Total: 2.19 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 0.29 Total: -23.46 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.40 Total: -53.44 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -1.91 Total: -61.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 73.17 SS G_CDS: -0.53 Total: 72.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.35 -8.66 -43.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.965 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds