Wall clock time and date at job start Mon Mar 30 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99644 * 2 1 4 4 C 1.53004 * 109.46863 * 179.97438 * 3 2 1 5 5 C 1.53044 * 109.45958 * 174.99876 * 4 3 2 6 6 C 1.53192 * 109.30830 * 181.37104 * 5 4 3 7 7 N 1.46921 * 108.77749 * 305.36325 * 6 5 4 8 8 S 1.65606 * 120.63289 * 233.58977 * 7 6 5 9 9 O 1.42105 * 106.40008 * 336.45758 * 8 7 6 10 10 O 1.42098 * 106.40370 * 203.53944 * 8 7 6 11 11 C 1.76193 * 107.21910 * 89.99915 * 8 7 6 12 12 H 1.08002 * 120.00351 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00314 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99660 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00522 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46652 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47242 * 119.99675 * 15 13 11 18 18 H 1.48499 * 109.47269 * 239.99877 * 15 13 11 19 19 C 1.46923 * 118.74101 * 53.86380 * 7 6 5 20 20 C 1.53043 * 109.44825 * 295.05724 * 4 3 2 21 21 H 1.09004 * 109.46372 * 60.00658 * 1 2 3 22 22 H 1.08998 * 109.46869 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47124 * 300.00556 * 1 2 3 24 24 H 1.00897 * 111.00160 * 236.03886 * 2 1 3 25 25 H 1.09001 * 109.47535 * 60.00008 * 3 2 1 26 26 H 1.08996 * 109.47288 * 299.99329 * 3 2 1 27 27 H 1.08997 * 109.46219 * 55.02402 * 4 3 2 28 28 H 1.08993 * 109.49377 * 61.42042 * 5 4 3 29 29 H 1.08997 * 109.49591 * 301.31832 * 5 4 3 30 30 H 1.09003 * 109.58717 * 185.57630 * 6 5 4 31 31 H 1.09004 * 109.70720 * 65.22402 * 6 5 4 32 32 H 0.96997 * 119.99726 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.58696 * 65.92455 * 19 7 6 34 34 H 1.09000 * 109.58966 * 186.35637 * 19 7 6 35 35 H 1.08994 * 109.49766 * 298.57778 * 20 4 3 36 36 H 1.09009 * 109.49525 * 58.66912 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 6 4.0730 2.7540 -0.1252 6 6 5.6038 2.7063 -0.1586 7 7 6.0803 1.9787 1.0255 8 16 7.1969 2.6595 2.0415 9 8 7.8973 3.6300 1.2753 10 8 7.8413 1.5830 2.7086 11 6 6.3063 3.5477 3.2753 12 1 5.2266 3.5632 3.2560 13 6 6.9877 4.2231 4.2656 14 7 8.3026 4.2038 4.2894 15 14 6.0436 5.1653 5.5733 16 1 4.5858 5.0314 5.3242 17 1 6.3701 4.6143 6.9131 18 1 6.4244 6.5997 5.5217 19 6 5.5518 0.6331 1.2879 20 6 4.0175 0.7063 1.3082 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8307 -0.5262 -0.7813 25 1 1.6459 1.8948 0.8900 26 1 1.6460 1.8947 -0.8900 27 1 3.8726 0.7319 -0.8412 28 1 3.7460 3.3465 0.7293 29 1 3.7029 3.2063 -1.0452 30 1 6.0014 3.7212 -0.1484 31 1 5.9359 2.1930 -1.0611 32 1 8.7820 4.6786 4.9863 33 1 5.8776 -0.0472 0.5011 34 1 5.9150 0.2797 2.2530 35 1 3.6910 1.3181 2.1491 36 1 3.6078 -0.2989 1.4084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:16 Heat of formation + Delta-G solvation = -129.764940 kcal Electronic energy + Delta-G solvation = -18825.736509 eV Core-core repulsion = 15855.358275 eV Total energy + Delta-G solvation = -2970.378234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70591 -37.45878 -36.81365 -36.13159 -35.18056 -33.28592 -31.85549 -28.25494 -28.06547 -25.03667 -24.08439 -22.84184 -21.34446 -20.31592 -19.22061 -18.29417 -17.08670 -16.68280 -16.47412 -16.01762 -15.70907 -15.45971 -15.19868 -15.03553 -14.37228 -14.11481 -13.98329 -13.87834 -13.31544 -13.21580 -13.03519 -12.79385 -12.59614 -12.49448 -12.37483 -12.30104 -12.24485 -12.02747 -11.65009 -11.29469 -11.26360 -11.17128 -10.88311 -9.71055 -9.28463 -8.73929 -7.47336 0.33422 1.31598 1.32360 1.50158 2.20049 2.57368 2.86243 3.35849 3.77517 3.89568 3.90820 4.04765 4.25862 4.37785 4.47292 4.53409 4.56817 4.63436 4.67392 4.76321 4.82361 4.91409 4.92903 5.00591 5.09305 5.17146 5.22852 5.26537 5.33552 5.51734 5.60641 5.92479 6.06715 6.11454 6.56883 6.78619 8.21232 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.006511 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.586986 B = 4299.440990 C = 4894.880900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.704 5.704 3 C 0.070 3.930 4 C -0.074 4.074 5 C -0.124 4.124 6 C 0.118 3.882 7 N -1.009 6.009 8 S 2.716 3.284 9 O -1.043 7.043 10 O -1.044 7.044 11 C -1.036 5.036 12 H 0.116 0.884 13 C 0.069 3.931 14 N -0.896 5.896 15 Si 0.989 3.011 16 H -0.248 1.248 17 H -0.259 1.259 18 H -0.258 1.258 19 C 0.116 3.884 20 C -0.112 4.112 21 H 0.026 0.974 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.348 0.652 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.298 0.702 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 -5.392 -8.862 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.335 5.335 3 C -0.059 4.059 4 C -0.093 4.093 5 C -0.163 4.163 6 C -0.007 4.007 7 N -0.848 5.848 8 S 2.819 3.181 9 O -1.033 7.033 10 O -1.034 7.034 11 C -1.169 5.169 12 H 0.134 0.866 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.807 3.193 16 H -0.171 1.171 17 H -0.183 1.183 18 H -0.182 1.182 19 C -0.009 4.009 20 C -0.151 4.151 21 H 0.045 0.955 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.167 0.833 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.444 -5.537 -8.239 17.526 hybrid contribution -0.485 1.008 0.184 1.134 sum -14.929 -4.529 -8.055 17.558 Atomic orbital electron populations 1.22191 0.87193 1.02393 1.00302 1.60331 1.08341 1.14238 1.50600 1.21936 0.93758 0.89712 1.00535 1.21039 0.94344 0.95822 0.98100 1.21922 0.93814 0.97474 1.03128 1.21470 0.95606 0.96360 0.87294 1.57683 1.61793 1.26272 1.39034 1.00035 0.72898 0.72232 0.72978 1.93284 1.73617 1.63061 1.73327 1.93284 1.75720 1.58198 1.76188 1.30990 1.07069 1.48743 1.30104 0.86620 1.26028 0.95429 0.93540 0.99333 1.70003 1.09007 1.38908 1.34833 0.85121 0.79462 0.78022 0.76670 1.17122 1.18322 1.18225 1.21603 0.95437 0.82321 1.01504 1.21884 0.92928 1.02470 0.97801 0.95528 0.90529 0.92436 0.83337 0.92104 0.94015 0.89680 0.92547 0.88440 0.91271 0.90073 0.89159 0.90182 0.91611 0.93344 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 127.69 1.37 1.78 16 2 N -0.70 -12.11 6.28 -537.14 -3.38 -15.49 16 3 C 0.07 1.33 5.07 86.31 0.44 1.76 16 4 C -0.07 -1.65 2.29 -10.76 -0.02 -1.68 16 5 C -0.12 -3.17 5.36 30.67 0.16 -3.00 16 6 C 0.12 3.92 6.37 86.36 0.55 4.47 16 7 N -1.01 -41.49 3.28 -512.29 -1.68 -43.17 16 8 S 2.72 151.01 4.97 -56.49 -0.28 150.73 16 9 O -1.04 -63.71 16.73 -128.00 -2.14 -65.86 16 10 O -1.04 -64.23 16.72 -128.00 -2.14 -66.37 16 11 C -1.04 -58.46 9.75 67.74 0.66 -57.80 16 12 H 0.12 5.97 7.81 -2.91 -0.02 5.95 16 13 C 0.07 3.93 5.46 84.65 0.46 4.39 16 14 N -0.90 -54.60 13.19 21.45 0.28 -54.32 16 15 Si 0.99 42.15 29.54 68.60 2.03 44.17 16 16 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 19 C 0.12 4.01 6.41 86.51 0.55 4.57 16 20 C -0.11 -3.10 5.28 30.82 0.16 -2.93 16 21 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 22 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.35 4.94 8.82 -89.70 -0.79 4.15 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 2.58 7.13 -2.39 -0.02 2.56 16 31 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.56 7.12 -2.39 -0.02 2.55 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 2.30 7.72 -2.38 -0.02 2.28 16 Total: -1.00 -76.38 305.20 -2.71 -79.09 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.27 Total: 19.65 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 4.33 Total: -48.44 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.77 Total: -112.98 kcal Atomic # 8 Polarization: -127.94 SS G_CDS: -4.28 Total: -132.22 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 151.01 SS G_CDS: -0.28 Total: 150.73 kcal Total: -76.38 -2.71 -79.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.674 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds