Wall clock time and date at job start Mon Mar 30 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 N 1.46896 * 109.47395 * 239.99983 * 2 1 3 5 5 C 1.52997 * 109.47096 * 119.99840 * 2 1 3 6 6 H 1.08999 * 109.59245 * 316.24069 * 5 2 1 7 7 C 1.53194 * 109.70832 * 76.59864 * 5 2 1 8 8 C 1.53038 * 109.31854 * 174.49380 * 7 5 2 9 9 C 1.53039 * 109.53490 * 298.63440 * 8 7 5 10 10 C 1.53192 * 109.31648 * 61.36623 * 9 8 7 11 11 N 1.46927 * 108.77205 * 305.36363 * 10 9 8 12 12 S 1.65600 * 120.63082 * 233.87875 * 11 10 9 13 13 O 1.42098 * 106.40352 * 3.17206 * 12 11 10 14 14 O 1.42103 * 106.40113 * 136.08959 * 12 11 10 15 15 C 1.76196 * 107.22069 * 249.63110 * 12 11 10 16 16 H 1.08005 * 120.00019 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00157 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99863 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00021 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47218 * 90.00044 * 19 17 15 21 21 H 1.48501 * 109.47281 * 210.00061 * 19 17 15 22 22 H 1.48496 * 109.47512 * 330.00266 * 19 17 15 23 23 H 1.08996 * 109.47021 * 294.50943 * 1 2 3 24 24 H 1.08996 * 109.46815 * 54.51176 * 1 2 3 25 25 H 1.08997 * 109.47087 * 174.51231 * 1 2 3 26 26 H 1.00906 * 110.99865 * 299.99944 * 4 2 1 27 27 H 1.00900 * 111.00213 * 63.95018 * 4 2 1 28 28 H 1.09003 * 109.49451 * 294.44902 * 7 5 2 29 29 H 1.09003 * 109.49307 * 54.50551 * 7 5 2 30 30 H 1.08993 * 109.46042 * 58.65014 * 8 7 5 31 31 H 1.09002 * 109.45985 * 178.63157 * 8 7 5 32 32 H 1.09000 * 109.49834 * 181.31554 * 9 8 7 33 33 H 1.09008 * 109.49811 * 301.38258 * 9 8 7 34 34 H 1.08996 * 109.59182 * 185.57921 * 10 9 8 35 35 H 1.08993 * 109.58594 * 65.14891 * 10 9 8 36 36 H 0.97000 * 120.00119 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 1 1.4625 -0.4020 2.1169 7 6 1.8970 -2.2354 1.0661 8 6 2.5339 -2.9520 2.2590 9 6 4.0246 -2.6119 2.3239 10 6 4.1918 -1.1020 2.5214 11 7 3.4590 -0.4020 1.4576 12 16 4.2196 0.7205 0.5069 13 8 5.5821 0.7309 0.9103 14 8 3.8063 0.4621 -0.8279 15 6 3.5620 2.2981 0.9348 16 1 2.8027 2.3775 1.6989 17 6 4.0173 3.4314 0.2951 18 7 4.9422 3.3349 -0.6349 19 14 3.3195 5.1039 0.7483 20 1 4.1286 5.6977 1.8429 21 1 3.3615 5.9958 -0.4382 22 1 1.9138 4.9477 1.2007 23 1 -0.3633 0.4263 0.9350 24 1 -0.3633 0.5966 -0.8367 25 1 -0.3633 -1.0229 -0.0983 26 1 1.6962 -1.6480 -1.2227 27 1 1.7503 -0.1990 -2.0372 28 1 0.8404 -2.4965 1.0066 29 1 2.3992 -2.5398 0.1478 30 1 2.0473 -2.6284 3.1790 31 1 2.4121 -4.0290 2.1430 32 1 4.4825 -3.1410 3.1597 33 1 4.5074 -2.9134 1.3941 34 1 5.2489 -0.8415 2.4692 35 1 3.7898 -0.8139 3.4926 36 1 5.2629 4.1322 -1.0847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:25 Heat of formation + Delta-G solvation = -71.387010 kcal Electronic energy + Delta-G solvation = -19975.639971 eV Core-core repulsion = 17007.793194 eV Total energy + Delta-G solvation = -2967.846777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.63277 -35.64330 -34.23927 -33.51898 -32.96508 -31.68378 -29.75016 -28.04291 -26.08167 -23.83703 -23.45219 -20.26633 -19.76871 -18.38404 -16.95178 -15.96127 -15.36536 -15.06807 -14.95448 -14.29895 -14.04750 -13.54727 -13.37709 -13.22045 -12.67669 -12.55675 -12.37055 -12.28128 -11.83012 -11.52414 -11.19465 -11.14824 -10.89393 -10.72161 -10.57506 -10.39857 -10.37488 -10.20783 -9.80349 -9.72090 -9.23201 -9.08462 -8.63286 -7.94536 -7.35858 -6.59002 -5.19166 2.54454 3.09353 3.16662 3.22812 4.12335 4.62588 4.72528 5.12186 5.22034 5.25816 5.27010 5.50024 5.59504 5.68235 5.81892 5.84734 5.96038 6.00069 6.07694 6.12877 6.22467 6.25253 6.32770 6.38400 6.42920 6.52544 6.69116 6.77848 6.98051 7.07347 7.41563 7.89444 8.05738 8.08157 8.39172 8.98661 10.32655 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.009573 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.472054 B = 2924.189170 C = 3375.917635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 H 0.116 0.884 4 N -0.783 5.783 5 C 0.176 3.824 6 H 0.059 0.941 7 C -0.132 4.132 8 C -0.113 4.113 9 C -0.132 4.132 10 C 0.120 3.880 11 N -1.003 6.003 12 S 2.706 3.294 13 O -1.020 7.020 14 O -0.947 6.947 15 C -1.028 5.028 16 H 0.096 0.904 17 C 0.136 3.864 18 N -0.843 5.843 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.264 1.264 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.308 0.692 27 H 0.339 0.661 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 -8.380 3.808 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.060 4.060 3 H 0.133 0.867 4 N -0.313 5.313 5 C 0.068 3.932 6 H 0.077 0.923 7 C -0.172 4.172 8 C -0.150 4.150 9 C -0.171 4.171 10 C -0.007 4.007 11 N -0.838 5.838 12 S 2.806 3.194 13 O -1.011 7.011 14 O -0.936 6.936 15 C -1.159 5.159 16 H 0.114 0.886 17 C -0.082 4.082 18 N -0.473 5.473 19 Si 0.736 3.264 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.188 1.188 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.547 -8.355 3.314 11.119 hybrid contribution -1.843 1.262 0.518 2.293 sum -8.390 -7.093 3.832 11.635 Atomic orbital electron populations 1.22629 0.98278 1.01022 1.02112 1.22077 0.91576 1.01512 0.90826 0.86681 1.58993 1.65932 1.03353 1.03071 1.20706 0.82385 0.93993 0.96103 0.92316 1.21975 0.99803 0.95901 0.99482 1.21432 0.96044 0.99132 0.98434 1.21888 0.96441 0.96936 1.01860 1.21212 0.97868 0.91090 0.90496 1.58256 1.18248 1.57277 1.50000 1.01006 0.71949 0.73248 0.73212 1.93300 1.35825 1.88162 1.83807 1.93576 1.81381 1.84799 1.33840 1.30840 1.36522 1.14974 1.33599 0.88569 1.24677 0.91651 1.00569 0.91268 1.69911 1.24270 1.32629 1.20477 0.86313 0.80157 0.81144 0.78817 1.19353 1.20099 1.18811 0.92469 0.92598 0.93232 0.87820 0.84740 0.92297 0.90079 0.92477 0.92646 0.91831 0.91657 0.88935 0.92961 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 9.30 37.16 0.35 -2.23 16 2 C 0.05 0.97 2.34 -67.72 -0.16 0.81 16 3 H 0.12 2.57 4.63 -51.90 -0.24 2.33 16 4 N -0.78 -14.41 5.65 -4.67 -0.03 -14.44 16 5 C 0.18 3.08 2.77 -67.60 -0.19 2.90 16 6 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16 7 C -0.13 -1.91 4.59 -26.61 -0.12 -2.03 16 8 C -0.11 -1.48 5.88 -26.69 -0.16 -1.64 16 9 C -0.13 -1.95 6.08 -26.61 -0.16 -2.11 16 10 C 0.12 2.17 6.51 -3.71 -0.02 2.15 16 11 N -1.00 -20.88 3.28 -106.47 -0.35 -21.23 16 12 S 2.71 71.99 4.40 -107.50 -0.47 71.52 16 13 O -1.02 -30.69 16.32 -57.17 -0.93 -31.63 16 14 O -0.95 -25.96 12.71 -57.17 -0.73 -26.69 16 15 C -1.03 -28.28 8.00 30.60 0.24 -28.03 16 16 H 0.10 2.47 7.81 -52.48 -0.41 2.06 16 17 C 0.14 3.80 5.46 -17.82 -0.10 3.70 16 18 N -0.84 -24.83 13.19 55.43 0.73 -24.10 16 19 Si 0.91 20.71 29.54 -169.99 -5.02 15.68 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 23 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.60 7.42 -51.93 -0.39 0.22 16 26 H 0.31 4.74 6.84 -39.29 -0.27 4.47 16 27 H 0.34 6.11 9.07 -39.29 -0.36 5.75 16 28 H 0.06 0.72 7.42 -51.93 -0.39 0.33 16 29 H 0.08 1.26 6.32 -51.93 -0.33 0.93 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.09 1.83 6.66 -51.93 -0.35 1.49 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 286.70 15.07 4.32 4.32 Total: -1.00 -33.56 286.70 -8.02 -41.58 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.22 Total: 11.47 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -0.32 Total: -26.49 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.36 Total: -59.77 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -1.66 Total: -58.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 71.99 SS G_CDS: -0.47 Total: 71.52 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.56 -8.02 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.811 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds