Wall clock time and date at job start Mon Mar 30 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 N 1.46896 * 109.47395 * 239.99983 * 2 1 3 5 5 C 1.52997 * 109.47096 * 119.99840 * 2 1 3 6 6 H 1.08999 * 109.59245 * 316.24069 * 5 2 1 7 7 C 1.53194 * 109.70832 * 76.59864 * 5 2 1 8 8 C 1.53038 * 109.31854 * 174.49380 * 7 5 2 9 9 C 1.53039 * 109.53490 * 298.63440 * 8 7 5 10 10 C 1.53192 * 109.31648 * 61.36623 * 9 8 7 11 11 N 1.46927 * 108.77205 * 305.36363 * 10 9 8 12 12 S 1.65600 * 120.63082 * 233.87875 * 11 10 9 13 13 O 1.42098 * 106.40352 * 3.17206 * 12 11 10 14 14 O 1.42103 * 106.40113 * 136.08959 * 12 11 10 15 15 C 1.76196 * 107.22069 * 249.63110 * 12 11 10 16 16 H 1.08005 * 120.00019 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00157 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99863 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00021 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47218 * 90.00044 * 19 17 15 21 21 H 1.48501 * 109.47281 * 210.00061 * 19 17 15 22 22 H 1.48496 * 109.47512 * 330.00266 * 19 17 15 23 23 H 1.08996 * 109.47021 * 294.50943 * 1 2 3 24 24 H 1.08996 * 109.46815 * 54.51176 * 1 2 3 25 25 H 1.08997 * 109.47087 * 174.51231 * 1 2 3 26 26 H 1.00906 * 110.99865 * 299.99944 * 4 2 1 27 27 H 1.00900 * 111.00213 * 63.95018 * 4 2 1 28 28 H 1.09003 * 109.49451 * 294.44902 * 7 5 2 29 29 H 1.09003 * 109.49307 * 54.50551 * 7 5 2 30 30 H 1.08993 * 109.46042 * 58.65014 * 8 7 5 31 31 H 1.09002 * 109.45985 * 178.63157 * 8 7 5 32 32 H 1.09000 * 109.49834 * 181.31554 * 9 8 7 33 33 H 1.09008 * 109.49811 * 301.38258 * 9 8 7 34 34 H 1.08996 * 109.59182 * 185.57921 * 10 9 8 35 35 H 1.08993 * 109.58594 * 65.14891 * 10 9 8 36 36 H 0.97000 * 120.00119 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 1 1.4625 -0.4020 2.1169 7 6 1.8970 -2.2354 1.0661 8 6 2.5339 -2.9520 2.2590 9 6 4.0246 -2.6119 2.3239 10 6 4.1918 -1.1020 2.5214 11 7 3.4590 -0.4020 1.4576 12 16 4.2196 0.7205 0.5069 13 8 5.5821 0.7309 0.9103 14 8 3.8063 0.4621 -0.8279 15 6 3.5620 2.2981 0.9348 16 1 2.8027 2.3775 1.6989 17 6 4.0173 3.4314 0.2951 18 7 4.9422 3.3349 -0.6349 19 14 3.3195 5.1039 0.7483 20 1 4.1286 5.6977 1.8429 21 1 3.3615 5.9958 -0.4382 22 1 1.9138 4.9477 1.2007 23 1 -0.3633 0.4263 0.9350 24 1 -0.3633 0.5966 -0.8367 25 1 -0.3633 -1.0229 -0.0983 26 1 1.6962 -1.6480 -1.2227 27 1 1.7503 -0.1990 -2.0372 28 1 0.8404 -2.4965 1.0066 29 1 2.3992 -2.5398 0.1478 30 1 2.0473 -2.6284 3.1790 31 1 2.4121 -4.0290 2.1430 32 1 4.4825 -3.1410 3.1597 33 1 4.5074 -2.9134 1.3941 34 1 5.2489 -0.8415 2.4692 35 1 3.7898 -0.8139 3.4926 36 1 5.2629 4.1322 -1.0847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:24 Heat of formation + Delta-G solvation = -98.225451 kcal Electronic energy + Delta-G solvation = -19976.803773 eV Core-core repulsion = 17007.793194 eV Total energy + Delta-G solvation = -2969.010579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98612 -37.45697 -36.02752 -35.53459 -35.06782 -33.06358 -31.07673 -29.31422 -28.20420 -25.16414 -24.77440 -21.61348 -21.21038 -20.35334 -18.68593 -17.86882 -16.93788 -16.79112 -16.58539 -15.88050 -15.55775 -15.03854 -14.99417 -14.65596 -14.16043 -13.90629 -13.83705 -13.62328 -13.52680 -13.20307 -13.01291 -12.70555 -12.32105 -12.29346 -12.26728 -11.95128 -11.84719 -11.73281 -11.51865 -11.25496 -11.20825 -10.77076 -10.69191 -9.52577 -8.79078 -8.63450 -7.35608 0.59887 1.31590 1.32402 1.47007 2.22617 2.63969 3.00451 3.80754 3.89549 3.97343 4.04346 4.14753 4.31284 4.32721 4.46170 4.52997 4.63905 4.71520 4.81538 4.88048 4.97397 5.01225 5.07448 5.19651 5.22201 5.29415 5.29623 5.31931 5.42937 5.57297 5.66681 5.98038 6.26556 6.70341 6.86069 7.09422 8.27259 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.009573 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.472054 B = 2924.189170 C = 3375.917635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.047 3.953 3 H 0.070 0.930 4 N -0.802 5.802 5 C 0.166 3.834 6 H 0.076 0.924 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.129 4.129 10 C 0.108 3.892 11 N -1.003 6.003 12 S 2.709 3.291 13 O -1.068 7.068 14 O -0.967 6.967 15 C -1.042 5.042 16 H 0.106 0.894 17 C 0.075 3.925 18 N -0.892 5.892 19 Si 0.978 3.022 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.248 1.248 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.326 0.674 27 H 0.336 0.664 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -9.322 5.328 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.066 4.066 3 H 0.088 0.912 4 N -0.335 5.335 5 C 0.060 3.940 6 H 0.094 0.906 7 C -0.167 4.167 8 C -0.146 4.146 9 C -0.168 4.168 10 C -0.018 4.018 11 N -0.841 5.841 12 S 2.809 3.191 13 O -1.059 7.059 14 O -0.956 6.956 15 C -1.174 5.174 16 H 0.125 0.875 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.797 3.203 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.171 1.171 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.142 0.858 27 H 0.149 0.851 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.093 -9.319 4.837 13.890 hybrid contribution -1.056 1.467 0.068 1.809 sum -10.149 -7.853 4.905 13.738 Atomic orbital electron populations 1.22499 0.94865 1.02930 1.02692 1.21993 0.94308 0.99091 0.91189 0.91221 1.58809 1.67057 1.04510 1.03119 1.21082 0.80164 0.96441 0.96317 0.90570 1.21962 1.01903 0.93234 0.99607 1.21451 0.94141 1.00644 0.98378 1.21889 0.98436 0.94176 1.02268 1.21482 0.96171 0.93480 0.90630 1.57800 1.19903 1.56317 1.50089 1.00577 0.71226 0.73763 0.73491 1.93229 1.39047 1.88978 1.84622 1.93553 1.81406 1.85146 1.35491 1.31144 1.36516 1.15995 1.33726 0.87536 1.25853 0.91769 1.05265 0.90902 1.70009 1.26087 1.34189 1.22064 0.85305 0.80088 0.75741 0.79138 1.18450 1.18730 1.17121 0.91465 0.92632 0.90466 0.85820 0.85063 0.88984 0.91554 0.90857 0.89896 0.88831 0.93371 0.91835 0.90685 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.30 71.98 0.67 -3.75 16 2 C 0.05 1.68 2.34 44.91 0.11 1.79 16 3 H 0.07 3.17 4.63 -2.41 -0.01 3.16 16 4 N -0.80 -29.45 5.65 -168.69 -0.95 -30.41 16 5 C 0.17 5.52 2.77 44.97 0.12 5.64 16 6 H 0.08 2.26 7.97 -2.39 -0.02 2.24 16 7 C -0.13 -3.26 4.59 30.67 0.14 -3.12 16 8 C -0.11 -2.39 5.88 30.62 0.18 -2.21 16 9 C -0.13 -3.50 6.08 30.67 0.19 -3.32 16 10 C 0.11 3.85 6.51 86.36 0.56 4.41 16 11 N -1.00 -41.69 3.28 -490.77 -1.61 -43.31 16 12 S 2.71 149.25 4.40 -56.49 -0.25 149.00 16 13 O -1.07 -67.50 16.32 -128.00 -2.09 -69.59 16 14 O -0.97 -55.18 12.71 -128.00 -1.63 -56.81 16 15 C -1.04 -58.62 8.00 67.73 0.54 -58.08 16 16 H 0.11 5.52 7.81 -2.91 -0.02 5.50 16 17 C 0.07 4.23 5.46 84.65 0.46 4.69 16 18 N -0.89 -54.33 13.19 21.45 0.28 -54.04 16 19 Si 0.98 42.34 29.54 68.60 2.03 44.36 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 23 H 0.07 1.60 8.05 -2.39 -0.02 1.59 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.57 7.42 -2.39 -0.02 1.56 16 26 H 0.33 9.64 6.84 -89.69 -0.61 9.03 16 27 H 0.34 12.33 9.07 -89.69 -0.81 11.52 16 28 H 0.09 1.77 7.42 -2.39 -0.02 1.75 16 29 H 0.07 1.91 6.32 -2.39 -0.02 1.89 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.06 2.61 6.66 -2.39 -0.02 2.59 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.29 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -76.31 286.70 -1.58 -77.89 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.33 Total: 36.84 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 2.97 Total: -53.94 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -2.28 Total: -127.75 kcal Atomic # 8 Polarization: -122.68 SS G_CDS: -3.72 Total: -126.40 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 149.25 SS G_CDS: -0.25 Total: 149.00 kcal Total: -76.31 -1.58 -77.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.334 kcal (2) G-P(sol) polarization free energy of solvation -76.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds