Wall clock time and date at job start Mon Mar 30 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47244 * 2 1 4 4 N 1.46507 * 109.47158 * 185.15679 * 3 2 1 5 5 C 1.46497 * 119.99876 * 271.15451 * 4 3 2 6 6 H 1.09000 * 110.63116 * 170.37735 * 5 4 3 7 7 C 1.55432 * 110.69435 * 47.10205 * 5 4 3 8 8 C 1.54912 * 101.52151 * 205.97482 * 7 5 4 9 9 N 1.47846 * 104.89239 * 37.06940 * 8 7 5 10 10 C 1.47450 * 108.56589 * 335.84518 * 9 8 7 11 11 S 1.65595 * 119.99892 * 91.15352 * 4 3 2 12 12 O 1.42096 * 106.40491 * 23.53891 * 11 4 3 13 13 O 1.42101 * 106.40292 * 156.46133 * 11 4 3 14 14 C 1.76210 * 107.21574 * 270.00060 * 11 4 3 15 15 H 1.07995 * 120.00055 * 0.02562 * 14 11 4 16 16 C 1.37877 * 119.99735 * 180.02562 * 14 11 4 17 17 N 1.31513 * 119.99874 * 179.97438 * 16 14 11 18 18 Si 1.86799 * 120.00080 * 0.02562 * 16 14 11 19 19 H 1.48496 * 109.47609 * 89.99903 * 18 16 14 20 20 H 1.48512 * 109.46954 * 209.99702 * 18 16 14 21 21 H 1.48501 * 109.47134 * 329.99538 * 18 16 14 22 22 H 1.08997 * 109.47057 * 299.99913 * 1 2 3 23 23 H 1.09000 * 109.47318 * 60.00233 * 1 2 3 24 24 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46785 * 239.99408 * 2 1 3 26 26 H 1.09001 * 109.46582 * 120.00333 * 2 1 3 27 27 H 1.08997 * 109.47615 * 65.15703 * 3 2 1 28 28 H 1.09002 * 109.46883 * 305.15645 * 3 2 1 29 29 H 1.09006 * 111.10296 * 87.90590 * 7 5 4 30 30 H 1.08997 * 111.00264 * 324.00354 * 7 5 4 31 31 H 1.08998 * 110.37285 * 278.18509 * 8 7 5 32 32 H 1.09000 * 110.37090 * 155.95010 * 8 7 5 33 33 H 1.00890 * 110.99947 * 98.11618 * 9 8 7 34 34 H 1.08995 * 109.88667 * 120.40094 * 10 9 8 35 35 H 1.08998 * 109.88798 * 241.58374 * 10 9 8 36 36 H 0.96995 * 119.99969 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4998 1.4442 -0.1242 5 6 4.3371 1.3816 1.0763 6 1 5.3814 1.2212 0.8083 7 6 3.8357 0.2684 2.0383 8 6 4.3375 0.7928 3.4068 9 7 4.1710 2.2602 3.3356 10 6 4.1809 2.6656 1.9180 11 16 4.2033 1.5171 -1.6215 12 8 3.2441 2.1084 -2.4872 13 8 5.5068 2.0485 -1.4270 14 6 4.4198 -0.1410 -2.1772 15 1 4.1054 -0.9649 -1.5538 16 6 4.9906 -0.3865 -3.4080 17 7 5.1527 -1.6240 -3.8226 18 14 5.5351 1.0386 -4.4861 19 1 6.9464 1.3819 -4.1773 20 1 5.4214 0.6499 -5.9149 21 1 4.6701 2.2167 -4.2232 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7541 1.9289 0.9325 28 1 1.6032 1.9822 -0.8402 29 1 4.2906 -0.6925 1.7976 30 1 2.7480 0.1986 2.0218 31 1 5.3873 0.5365 3.5495 32 1 3.7337 0.3812 4.2155 33 1 3.3172 2.5495 3.7886 34 1 3.2431 3.1614 1.6676 35 1 5.0192 3.3365 1.7301 36 1 5.5546 -1.7967 -4.6883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:30 Heat of formation + Delta-G solvation = -77.621272 kcal Electronic energy + Delta-G solvation = -19407.143241 eV Core-core repulsion = 16439.026126 eV Total energy + Delta-G solvation = -2968.117115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.89779 -35.91976 -35.30049 -34.45563 -33.06031 -32.27710 -29.30907 -27.90400 -26.40849 -25.30519 -21.77606 -20.98055 -20.34008 -18.64530 -17.65246 -16.99964 -16.46872 -15.51359 -15.02351 -14.75652 -14.21153 -13.76425 -13.53546 -13.42391 -13.16120 -12.97891 -12.66611 -12.41828 -11.80365 -11.76527 -11.51814 -11.37611 -11.31582 -11.24681 -10.92494 -10.77205 -10.65549 -10.54043 -10.37593 -10.01805 -9.79458 -9.22047 -9.13668 -8.62820 -8.13891 -6.81592 -5.34819 1.97045 3.05543 3.16305 3.25317 3.93597 3.99912 4.43101 4.57534 4.82844 4.98324 5.20617 5.23402 5.26022 5.45310 5.47281 5.48981 5.61674 5.63043 5.65132 5.93118 5.98501 6.03189 6.08148 6.12578 6.14404 6.27399 6.32017 6.52005 6.72481 6.73682 6.84626 7.33289 7.43641 7.47367 8.20722 8.69651 10.30615 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.008691 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.086905 B = 3220.844078 C = 3652.437628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.123 3.877 4 N -0.992 5.992 5 C 0.139 3.861 6 H 0.110 0.890 7 C -0.172 4.172 8 C 0.046 3.954 9 N -0.683 5.683 10 C 0.032 3.968 11 S 2.672 3.328 12 O -1.006 7.006 13 O -1.008 7.008 14 C -1.013 5.013 15 H 0.122 0.878 16 C 0.154 3.846 17 N -0.823 5.823 18 Si 0.799 3.201 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.220 1.220 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.334 0.666 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 3.184 10.997 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C -0.003 4.003 4 N -0.825 5.825 5 C 0.031 3.969 6 H 0.128 0.872 7 C -0.212 4.212 8 C -0.083 4.083 9 N -0.311 5.311 10 C -0.099 4.099 11 S 2.776 3.224 12 O -0.996 6.996 13 O -0.999 6.999 14 C -1.147 5.147 15 H 0.140 0.860 16 C -0.066 4.066 17 N -0.452 5.452 18 Si 0.619 3.381 19 H -0.170 1.170 20 H -0.179 1.179 21 H -0.142 1.142 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.971 4.048 10.554 12.348 hybrid contribution -0.638 -0.731 -0.849 1.289 sum -5.608 3.317 9.706 11.690 Atomic orbital electron populations 1.21700 0.95882 1.01525 1.01484 1.22306 0.95595 0.97978 1.03913 1.21202 0.79682 0.96760 1.02630 1.57517 1.12697 1.90342 1.21939 1.21985 0.95785 0.93891 0.85256 0.87213 1.23774 1.02304 0.99755 0.95369 1.22850 1.01742 0.87386 0.96347 1.61764 1.41886 1.12998 1.14477 1.23067 1.02084 0.97912 0.86810 1.01524 0.72729 0.77260 0.70911 1.93445 1.63194 1.79761 1.63202 1.93404 1.39902 1.81713 1.84842 1.30526 1.54771 1.15983 1.13432 0.86000 1.24423 0.90273 0.96086 0.95803 1.69985 1.35702 1.19397 1.20106 0.87906 0.83169 0.84303 0.82738 1.16995 1.17863 1.14242 0.93296 0.92423 0.92772 0.90033 0.91252 0.91655 0.89277 0.89956 0.89753 0.90321 0.91592 0.85066 0.92270 0.90000 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.16 -2.44 5.87 -26.74 -0.16 -2.59 16 3 C 0.12 1.99 4.71 -4.04 -0.02 1.98 16 4 N -0.99 -18.99 2.80 -105.21 -0.29 -19.29 16 5 C 0.14 2.34 3.25 -65.95 -0.21 2.13 16 6 H 0.11 2.05 7.21 -51.93 -0.37 1.68 16 7 C -0.17 -2.34 5.92 -24.43 -0.14 -2.49 16 8 C 0.05 0.54 7.56 -2.29 -0.02 0.52 16 9 N -0.68 -8.44 7.39 -110.78 -0.82 -9.26 16 10 C 0.03 0.47 7.14 -2.83 -0.02 0.45 16 11 S 2.67 66.58 4.17 -107.50 -0.45 66.13 16 12 O -1.01 -26.71 14.61 -57.17 -0.84 -27.55 16 13 O -1.01 -26.86 15.55 -57.17 -0.89 -27.75 16 14 C -1.01 -27.92 10.11 30.60 0.31 -27.61 16 15 H 0.12 3.38 7.88 -52.49 -0.41 2.97 16 16 C 0.15 4.39 5.47 -17.82 -0.10 4.30 16 17 N -0.82 -23.63 13.96 55.43 0.77 -22.85 16 18 Si 0.80 20.63 26.54 -169.99 -4.51 16.12 16 19 H -0.25 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.22 -5.80 5.61 56.52 0.32 -5.48 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 26 H 0.07 0.97 5.31 -51.93 -0.28 0.69 16 27 H 0.07 0.86 6.89 -51.93 -0.36 0.51 16 28 H 0.09 1.54 6.99 -51.93 -0.36 1.18 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.07 4.71 -51.93 -0.24 0.83 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.33 3.42 8.91 -39.30 -0.35 3.07 16 34 H 0.06 0.81 6.85 -51.93 -0.36 0.45 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -31.51 292.64 -7.92 -39.43 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.32 Total: 5.40 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 0.01 Total: -24.79 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.34 Total: -51.40 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -1.72 Total: -55.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.51 Total: 16.12 kcal Atomic # 16 Polarization: 66.58 SS G_CDS: -0.45 Total: 66.13 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.51 -7.92 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.189 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds