Wall clock time and date at job start Mon Mar 30 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47244 * 2 1 4 4 N 1.46507 * 109.47158 * 185.15679 * 3 2 1 5 5 C 1.46497 * 119.99876 * 271.15451 * 4 3 2 6 6 H 1.09000 * 110.63116 * 170.37735 * 5 4 3 7 7 C 1.55432 * 110.69435 * 47.10205 * 5 4 3 8 8 C 1.54912 * 101.52151 * 205.97482 * 7 5 4 9 9 N 1.47846 * 104.89239 * 37.06940 * 8 7 5 10 10 C 1.47450 * 108.56589 * 335.84518 * 9 8 7 11 11 S 1.65595 * 119.99892 * 91.15352 * 4 3 2 12 12 O 1.42096 * 106.40491 * 23.53891 * 11 4 3 13 13 O 1.42101 * 106.40292 * 156.46133 * 11 4 3 14 14 C 1.76210 * 107.21574 * 270.00060 * 11 4 3 15 15 H 1.07995 * 120.00055 * 0.02562 * 14 11 4 16 16 C 1.37877 * 119.99735 * 180.02562 * 14 11 4 17 17 N 1.31513 * 119.99874 * 179.97438 * 16 14 11 18 18 Si 1.86799 * 120.00080 * 0.02562 * 16 14 11 19 19 H 1.48496 * 109.47609 * 89.99903 * 18 16 14 20 20 H 1.48512 * 109.46954 * 209.99702 * 18 16 14 21 21 H 1.48501 * 109.47134 * 329.99538 * 18 16 14 22 22 H 1.08997 * 109.47057 * 299.99913 * 1 2 3 23 23 H 1.09000 * 109.47318 * 60.00233 * 1 2 3 24 24 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46785 * 239.99408 * 2 1 3 26 26 H 1.09001 * 109.46582 * 120.00333 * 2 1 3 27 27 H 1.08997 * 109.47615 * 65.15703 * 3 2 1 28 28 H 1.09002 * 109.46883 * 305.15645 * 3 2 1 29 29 H 1.09006 * 111.10296 * 87.90590 * 7 5 4 30 30 H 1.08997 * 111.00264 * 324.00354 * 7 5 4 31 31 H 1.08998 * 110.37285 * 278.18509 * 8 7 5 32 32 H 1.09000 * 110.37090 * 155.95010 * 8 7 5 33 33 H 1.00890 * 110.99947 * 98.11618 * 9 8 7 34 34 H 1.08995 * 109.88667 * 120.40094 * 10 9 8 35 35 H 1.08998 * 109.88798 * 241.58374 * 10 9 8 36 36 H 0.96995 * 119.99969 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4998 1.4442 -0.1242 5 6 4.3371 1.3816 1.0763 6 1 5.3814 1.2212 0.8083 7 6 3.8357 0.2684 2.0383 8 6 4.3375 0.7928 3.4068 9 7 4.1710 2.2602 3.3356 10 6 4.1809 2.6656 1.9180 11 16 4.2033 1.5171 -1.6215 12 8 3.2441 2.1084 -2.4872 13 8 5.5068 2.0485 -1.4270 14 6 4.4198 -0.1410 -2.1772 15 1 4.1054 -0.9649 -1.5538 16 6 4.9906 -0.3865 -3.4080 17 7 5.1527 -1.6240 -3.8226 18 14 5.5351 1.0386 -4.4861 19 1 6.9464 1.3819 -4.1773 20 1 5.4214 0.6499 -5.9149 21 1 4.6701 2.2167 -4.2232 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7541 1.9289 0.9325 28 1 1.6032 1.9822 -0.8402 29 1 4.2906 -0.6925 1.7976 30 1 2.7480 0.1986 2.0218 31 1 5.3873 0.5365 3.5495 32 1 3.7337 0.3812 4.2155 33 1 3.3172 2.5495 3.7886 34 1 3.2431 3.1614 1.6676 35 1 5.0192 3.3365 1.7301 36 1 5.5546 -1.7967 -4.6883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:29 Heat of formation + Delta-G solvation = -103.339727 kcal Electronic energy + Delta-G solvation = -19408.258476 eV Core-core repulsion = 16439.026126 eV Total energy + Delta-G solvation = -2969.232351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10581 -37.85045 -36.67046 -36.52481 -35.21751 -33.54174 -30.40184 -29.08026 -28.56878 -26.56305 -22.91173 -22.13831 -21.75656 -20.46001 -19.40173 -18.90104 -17.84829 -17.31175 -16.40525 -16.19100 -15.75545 -15.59422 -15.06709 -15.05634 -14.53037 -14.46262 -14.16641 -13.58286 -13.50910 -13.18467 -13.05773 -12.95341 -12.70656 -12.70538 -12.50016 -12.45341 -12.28513 -12.04791 -11.89060 -11.51364 -11.37497 -11.24888 -11.16961 -9.96337 -9.33278 -8.99008 -7.53235 0.06365 1.00319 1.09594 1.16736 1.85206 2.33410 2.39792 3.30070 3.37215 3.65540 3.79364 3.93363 4.08680 4.15598 4.21402 4.25726 4.35826 4.48633 4.51767 4.65399 4.78022 4.87440 4.93173 5.01066 5.05004 5.18097 5.21746 5.32663 5.35895 5.44545 5.51525 5.76618 5.93779 6.00823 6.51823 6.56551 8.18547 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.008691 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.086905 B = 3220.844078 C = 3652.437628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 C 0.116 3.884 4 N -0.985 5.985 5 C 0.123 3.877 6 H 0.082 0.918 7 C -0.166 4.166 8 C 0.052 3.948 9 N -0.682 5.682 10 C 0.039 3.961 11 S 2.689 3.311 12 O -1.025 7.025 13 O -1.030 7.030 14 C -1.031 5.031 15 H 0.107 0.893 16 C 0.110 3.890 17 N -0.852 5.852 18 Si 0.819 3.181 19 H -0.240 1.240 20 H -0.218 1.218 21 H -0.231 1.231 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.352 0.648 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 3.862 12.857 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C -0.009 4.009 4 N -0.821 5.821 5 C 0.015 3.985 6 H 0.100 0.900 7 C -0.206 4.206 8 C -0.077 4.077 9 N -0.311 5.311 10 C -0.092 4.092 11 S 2.791 3.209 12 O -1.015 7.015 13 O -1.020 7.020 14 C -1.163 5.163 15 H 0.125 0.875 16 C -0.107 4.107 17 N -0.482 5.482 18 Si 0.636 3.364 19 H -0.164 1.164 20 H -0.140 1.140 21 H -0.153 1.153 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.218 4.701 12.397 14.644 hybrid contribution -0.282 -0.973 -1.313 1.658 sum -6.500 3.727 11.084 13.379 Atomic orbital electron populations 1.21684 0.93397 1.02483 1.02617 1.22286 0.97784 0.96986 1.02660 1.21513 0.77438 0.97696 1.04219 1.57123 1.14233 1.90185 1.20607 1.22242 0.94239 0.96995 0.84991 0.90022 1.23762 1.03112 0.98174 0.95535 1.22868 1.02133 0.86790 0.95907 1.61682 1.43180 1.13466 1.12810 1.22907 1.02285 0.96337 0.87676 1.00782 0.72246 0.75784 0.72089 1.93408 1.63433 1.79524 1.65177 1.93366 1.41420 1.81498 1.85711 1.31021 1.54257 1.17688 1.13380 0.87522 1.25127 0.90629 0.97876 0.97054 1.70006 1.36634 1.20414 1.21181 0.87580 0.82894 0.82030 0.83879 1.16393 1.13982 1.15313 0.90342 0.93114 0.91977 0.94173 0.89693 0.87409 0.90561 0.90853 0.88198 0.90811 0.88306 0.83122 0.90857 0.91366 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.53 16 2 C -0.16 -4.64 5.87 30.59 0.18 -4.46 16 3 C 0.12 3.56 4.71 86.37 0.41 3.97 16 4 N -0.98 -37.32 2.80 -486.77 -1.36 -38.68 16 5 C 0.12 4.04 3.25 46.28 0.15 4.19 16 6 H 0.08 3.13 7.21 -2.39 -0.02 3.11 16 7 C -0.17 -4.17 5.92 32.08 0.19 -3.98 16 8 C 0.05 1.05 7.56 86.77 0.66 1.71 16 9 N -0.68 -14.61 7.39 -504.41 -3.73 -18.34 16 10 C 0.04 1.06 7.14 86.65 0.62 1.68 16 11 S 2.69 136.15 4.17 -56.49 -0.24 135.92 16 12 O -1.03 -55.08 14.61 -128.00 -1.87 -56.95 16 13 O -1.03 -55.84 15.55 -128.00 -1.99 -57.83 16 14 C -1.03 -58.60 10.11 67.73 0.68 -57.91 16 15 H 0.11 6.19 7.88 -2.91 -0.02 6.17 16 16 C 0.11 6.40 5.47 84.65 0.46 6.86 16 17 N -0.85 -49.75 13.96 21.45 0.30 -49.45 16 18 Si 0.82 41.78 26.54 68.60 1.82 43.60 16 19 H -0.24 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.22 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.23 -12.12 5.61 99.48 0.56 -11.56 16 22 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 1.50 7.79 -2.39 -0.02 1.49 16 26 H 0.08 2.18 5.31 -2.39 -0.01 2.17 16 27 H 0.11 2.42 6.89 -2.39 -0.02 2.41 16 28 H 0.08 2.56 6.99 -2.39 -0.02 2.55 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.10 2.19 4.71 -2.39 -0.01 2.18 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.35 5.64 8.91 -89.70 -0.80 4.84 16 34 H 0.07 1.77 6.85 -2.39 -0.02 1.75 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -69.31 292.64 -2.87 -72.18 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.13 Total: 20.03 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 4.06 Total: -50.48 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.79 Total: -106.47 kcal Atomic # 8 Polarization: -110.91 SS G_CDS: -3.86 Total: -114.77 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.82 Total: 43.60 kcal Atomic # 16 Polarization: 136.15 SS G_CDS: -0.24 Total: 135.92 kcal Total: -69.31 -2.87 -72.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.159 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds