Wall clock time and date at job start Mon Mar 30 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46834 * 2 1 4 4 N 1.46897 * 109.47224 * 119.99699 * 2 1 3 5 5 C 1.52998 * 109.47182 * 240.00337 * 2 1 3 6 6 C 1.53039 * 109.45889 * 179.97438 * 5 2 1 7 7 C 1.53196 * 109.33748 * 178.60961 * 6 5 2 8 8 N 1.46995 * 108.73708 * 54.62190 * 7 6 5 9 9 S 1.65600 * 120.61359 * 126.38974 * 8 7 6 10 10 O 1.42103 * 106.39935 * 23.55886 * 9 8 7 11 11 O 1.42094 * 106.40240 * 156.47907 * 9 8 7 12 12 C 1.76192 * 107.21678 * 270.01839 * 9 8 7 13 13 H 1.08000 * 120.00414 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00119 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99972 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00141 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47182 * 90.00220 * 16 14 12 18 18 H 1.48503 * 109.46913 * 210.00065 * 16 14 12 19 19 H 1.48495 * 109.47006 * 329.99690 * 16 14 12 20 20 C 1.46925 * 118.75597 * 306.40484 * 8 7 6 21 21 C 1.53042 * 109.45090 * 59.93216 * 5 2 1 22 22 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47443 * 299.99895 * 1 2 3 24 24 H 1.08998 * 109.47290 * 60.00177 * 1 2 3 25 25 H 1.00903 * 111.00220 * 296.05195 * 4 2 1 26 26 H 1.00898 * 110.99671 * 60.00309 * 4 2 1 27 27 H 1.09006 * 109.45654 * 299.97169 * 5 2 1 28 28 H 1.09002 * 109.49756 * 298.57684 * 6 5 2 29 29 H 1.09000 * 109.49883 * 58.64427 * 6 5 2 30 30 H 1.09001 * 109.58261 * 174.43824 * 7 6 5 31 31 H 1.08996 * 109.58319 * 294.86146 * 7 6 5 32 32 H 0.97002 * 120.00193 * 179.97438 * 15 14 12 33 33 H 1.09004 * 109.58683 * 293.82929 * 20 8 7 34 34 H 1.08994 * 109.70376 * 173.46782 * 20 8 7 35 35 H 1.08992 * 109.50305 * 301.33391 * 21 5 2 36 36 H 1.08998 * 109.49487 * 61.40001 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0400 -0.7212 -1.2493 6 6 3.5704 -0.7204 -1.2493 7 6 4.0780 -1.4732 -2.4832 8 7 3.4736 -0.8758 -3.6826 9 16 4.4229 -0.3596 -4.9374 10 8 5.6399 -1.0876 -4.8457 11 8 3.5979 -0.3675 -6.0943 12 6 4.8272 1.3268 -4.6261 13 1 4.4567 1.8158 -3.7373 14 6 5.6176 2.0220 -5.5166 15 7 6.0701 1.4262 -6.5983 16 14 6.0468 3.8098 -5.1862 17 1 7.3041 3.8797 -4.3990 18 1 6.2304 4.5214 -6.4766 19 1 4.9470 4.4494 -4.4203 20 6 2.0116 -0.7450 -3.7469 21 6 1.5282 -0.0003 -2.4985 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.7502 -0.1989 2.0373 26 1 1.6962 -1.6478 1.2227 27 1 1.6770 -1.7490 -1.2488 28 1 3.9337 0.3069 -1.2749 29 1 3.9345 -1.2127 -0.3475 30 1 5.1634 -1.3910 -2.5404 31 1 3.7921 -2.5228 -2.4141 32 1 6.6258 1.9154 -7.2250 33 1 1.5573 -1.7353 -3.7809 34 1 1.7318 -0.1838 -4.6384 35 1 0.4386 0.0197 -2.4863 36 1 1.9107 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:52 Heat of formation + Delta-G solvation = -107.288402 kcal Electronic energy + Delta-G solvation = -19044.027573 eV Core-core repulsion = 16074.623995 eV Total energy + Delta-G solvation = -2969.403578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.75801 -35.58604 -35.23639 -33.89861 -33.03855 -31.16135 -30.64167 -28.40986 -26.07378 -24.42798 -22.68674 -20.85859 -19.91732 -18.48287 -17.46303 -16.34967 -15.75286 -14.98418 -14.90371 -14.73717 -14.23302 -13.93581 -13.76689 -13.34306 -13.23799 -12.82128 -12.63172 -12.22027 -11.97347 -11.78576 -11.36452 -11.21419 -11.18423 -10.80208 -10.59853 -10.52756 -10.40831 -10.31114 -10.23551 -9.92592 -9.76158 -9.20747 -8.84471 -8.72692 -8.09403 -6.64950 -5.26359 2.34244 3.09094 3.15669 3.22119 4.09218 4.44904 4.62129 4.68384 4.74662 5.01405 5.19487 5.27443 5.40657 5.47181 5.62226 5.76543 5.82595 5.84274 5.88347 5.97733 6.01436 6.16373 6.23709 6.28011 6.32287 6.37479 6.52699 6.64596 6.77920 6.96887 7.09591 7.36539 7.37626 7.69012 8.03658 8.93936 10.28484 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.006922 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.923826 B = 4044.300640 C = 4507.308727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.080 0.920 4 N -0.842 5.842 5 C -0.073 4.073 6 C -0.120 4.120 7 C 0.125 3.875 8 N -1.012 6.012 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.007 7.007 12 C -1.018 5.018 13 H 0.102 0.898 14 C 0.133 3.867 15 N -0.847 5.847 16 Si 0.918 3.082 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.263 1.263 20 C 0.129 3.871 21 C -0.132 4.132 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.336 0.664 26 H 0.337 0.663 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.290 0.710 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.590 -2.008 12.809 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.023 4.023 3 H 0.098 0.902 4 N -0.370 5.370 5 C -0.092 4.092 6 C -0.159 4.159 7 C -0.001 4.001 8 N -0.847 5.847 9 S 2.817 3.183 10 O -0.996 6.996 11 O -0.997 6.997 12 C -1.151 5.151 13 H 0.120 0.880 14 C -0.085 4.085 15 N -0.477 5.477 16 Si 0.742 3.258 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.187 1.187 20 C 0.002 3.998 21 C -0.172 4.172 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.496 -2.451 11.601 14.586 hybrid contribution -0.898 1.434 0.781 1.864 sum -9.394 -1.017 12.382 15.575 Atomic orbital electron populations 1.22689 0.98144 1.01774 1.02149 1.21518 0.91622 0.98625 0.90527 0.90177 1.58865 1.67481 1.06349 1.04273 1.21063 0.96515 0.98845 0.92785 1.21855 0.94424 1.01729 0.97879 1.21254 0.98556 0.95850 0.84454 1.58179 1.15140 1.77322 1.34097 1.00460 0.71459 0.75827 0.70592 1.93347 1.45292 1.75016 1.85957 1.93342 1.69773 1.89315 1.47284 1.30645 1.44750 1.22223 1.17505 0.88018 1.24752 0.90983 1.00569 0.92182 1.69903 1.29175 1.38842 1.09799 0.86198 0.79549 0.81383 0.78625 1.19206 1.20019 1.18711 1.21147 0.80795 0.99627 0.98219 1.22050 0.99891 1.00492 0.94752 0.92863 0.93244 0.91480 0.85147 0.85089 0.91707 0.91578 0.90360 0.89303 0.92858 0.89961 0.92779 0.89255 0.91500 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 9.13 37.16 0.34 -1.34 16 2 C 0.09 0.94 2.94 -67.71 -0.20 0.74 16 3 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 4 N -0.84 -7.86 8.44 -4.67 -0.04 -7.90 16 5 C -0.07 -0.93 1.89 -90.58 -0.17 -1.10 16 6 C -0.12 -1.78 5.22 -26.61 -0.14 -1.92 16 7 C 0.12 2.22 6.38 -3.67 -0.02 2.20 16 8 N -1.01 -20.93 3.29 -113.47 -0.37 -21.31 16 9 S 2.72 73.60 4.97 -107.50 -0.53 73.06 16 10 O -1.01 -29.92 16.73 -57.17 -0.96 -30.88 16 11 O -1.01 -29.80 16.74 -57.17 -0.96 -30.76 16 12 C -1.02 -28.37 9.75 30.60 0.30 -28.07 16 13 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 14 C 0.13 3.75 5.46 -17.82 -0.10 3.66 16 15 N -0.85 -25.29 13.19 55.43 0.73 -24.56 16 16 Si 0.92 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 20 C 0.13 2.23 6.38 -3.71 -0.02 2.20 16 21 C -0.13 -1.86 5.04 -26.61 -0.13 -1.99 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.62 6.40 -51.93 -0.33 0.28 16 25 H 0.34 2.61 9.07 -39.29 -0.36 2.25 16 26 H 0.34 2.79 9.00 -39.29 -0.35 2.43 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.07 7.56 -51.93 -0.39 0.67 16 30 H 0.09 1.71 7.13 -51.93 -0.37 1.34 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.66 7.13 -51.93 -0.37 1.29 16 35 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -34.44 300.31 -8.21 -42.65 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.43 Total: 4.97 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -0.15 Total: -25.63 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.32 Total: -53.77 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.91 Total: -61.64 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 73.60 SS G_CDS: -0.53 Total: 73.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.44 -8.21 -42.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.643 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds