Wall clock time and date at job start Mon Mar 30 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46834 * 2 1 4 4 N 1.46897 * 109.47224 * 119.99699 * 2 1 3 5 5 C 1.52998 * 109.47182 * 240.00337 * 2 1 3 6 6 C 1.53039 * 109.45889 * 179.97438 * 5 2 1 7 7 C 1.53196 * 109.33748 * 178.60961 * 6 5 2 8 8 N 1.46995 * 108.73708 * 54.62190 * 7 6 5 9 9 S 1.65600 * 120.61359 * 126.38974 * 8 7 6 10 10 O 1.42103 * 106.39935 * 23.55886 * 9 8 7 11 11 O 1.42094 * 106.40240 * 156.47907 * 9 8 7 12 12 C 1.76192 * 107.21678 * 270.01839 * 9 8 7 13 13 H 1.08000 * 120.00414 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00119 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99972 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00141 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47182 * 90.00220 * 16 14 12 18 18 H 1.48503 * 109.46913 * 210.00065 * 16 14 12 19 19 H 1.48495 * 109.47006 * 329.99690 * 16 14 12 20 20 C 1.46925 * 118.75597 * 306.40484 * 8 7 6 21 21 C 1.53042 * 109.45090 * 59.93216 * 5 2 1 22 22 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47443 * 299.99895 * 1 2 3 24 24 H 1.08998 * 109.47290 * 60.00177 * 1 2 3 25 25 H 1.00903 * 111.00220 * 296.05195 * 4 2 1 26 26 H 1.00898 * 110.99671 * 60.00309 * 4 2 1 27 27 H 1.09006 * 109.45654 * 299.97169 * 5 2 1 28 28 H 1.09002 * 109.49756 * 298.57684 * 6 5 2 29 29 H 1.09000 * 109.49883 * 58.64427 * 6 5 2 30 30 H 1.09001 * 109.58261 * 174.43824 * 7 6 5 31 31 H 1.08996 * 109.58319 * 294.86146 * 7 6 5 32 32 H 0.97002 * 120.00193 * 179.97438 * 15 14 12 33 33 H 1.09004 * 109.58683 * 293.82929 * 20 8 7 34 34 H 1.08994 * 109.70376 * 173.46782 * 20 8 7 35 35 H 1.08992 * 109.50305 * 301.33391 * 21 5 2 36 36 H 1.08998 * 109.49487 * 61.40001 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0400 -0.7212 -1.2493 6 6 3.5704 -0.7204 -1.2493 7 6 4.0780 -1.4732 -2.4832 8 7 3.4736 -0.8758 -3.6826 9 16 4.4229 -0.3596 -4.9374 10 8 5.6399 -1.0876 -4.8457 11 8 3.5979 -0.3675 -6.0943 12 6 4.8272 1.3268 -4.6261 13 1 4.4567 1.8158 -3.7373 14 6 5.6176 2.0220 -5.5166 15 7 6.0701 1.4262 -6.5983 16 14 6.0468 3.8098 -5.1862 17 1 7.3041 3.8797 -4.3990 18 1 6.2304 4.5214 -6.4766 19 1 4.9470 4.4494 -4.4203 20 6 2.0116 -0.7450 -3.7469 21 6 1.5282 -0.0003 -2.4985 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.7502 -0.1989 2.0373 26 1 1.6962 -1.6478 1.2227 27 1 1.6770 -1.7490 -1.2488 28 1 3.9337 0.3069 -1.2749 29 1 3.9345 -1.2127 -0.3475 30 1 5.1634 -1.3910 -2.5404 31 1 3.7921 -2.5228 -2.4141 32 1 6.6258 1.9154 -7.2250 33 1 1.5573 -1.7353 -3.7809 34 1 1.7318 -0.1838 -4.6384 35 1 0.4386 0.0197 -2.4863 36 1 1.9107 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:51 Heat of formation + Delta-G solvation = -135.554242 kcal Electronic energy + Delta-G solvation = -19045.253271 eV Core-core repulsion = 16074.623995 eV Total energy + Delta-G solvation = -2970.629277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91829 -37.47083 -36.70644 -36.14178 -35.17693 -32.33800 -31.95395 -29.21282 -28.25927 -25.64327 -23.98467 -22.05252 -21.12816 -20.35644 -19.25762 -18.32851 -17.13570 -16.62773 -16.56661 -16.03869 -15.64548 -15.23217 -15.13637 -14.92451 -14.29760 -14.11064 -13.96786 -13.67503 -13.51125 -13.24356 -13.04826 -12.99371 -12.51123 -12.41797 -12.32120 -12.29561 -12.14312 -11.98132 -11.45692 -11.29663 -11.25867 -11.16814 -10.88769 -9.72404 -9.43507 -8.74431 -7.48246 0.32431 1.31697 1.32670 1.48581 2.19545 2.56880 2.85005 3.65112 3.74661 3.83942 3.91304 4.10242 4.26793 4.35363 4.44489 4.49564 4.54836 4.58694 4.64911 4.80609 4.89671 4.95435 4.99490 5.09125 5.18000 5.23533 5.24895 5.34185 5.40558 5.51978 5.64436 5.91433 6.05767 6.40141 6.75992 6.77720 8.20611 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.006922 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.923826 B = 4044.300640 C = 4507.308727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.095 3.905 3 H 0.067 0.933 4 N -0.848 5.848 5 C -0.068 4.068 6 C -0.112 4.112 7 C 0.116 3.884 8 N -1.008 6.008 9 S 2.716 3.284 10 O -1.044 7.044 11 O -1.043 7.043 12 C -1.037 5.037 13 H 0.116 0.884 14 C 0.069 3.931 15 N -0.896 5.896 16 Si 0.988 3.012 17 H -0.254 1.254 18 H -0.261 1.261 19 H -0.248 1.248 20 C 0.117 3.883 21 C -0.126 4.126 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.347 0.653 26 H 0.345 0.655 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.299 0.701 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 -1.239 15.101 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 H 0.085 0.915 4 N -0.378 5.378 5 C -0.087 4.087 6 C -0.151 4.151 7 C -0.009 4.009 8 N -0.847 5.847 9 S 2.819 3.181 10 O -1.034 7.034 11 O -1.033 7.033 12 C -1.170 5.170 13 H 0.134 0.866 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.806 3.194 17 H -0.179 1.179 18 H -0.185 1.185 19 H -0.171 1.171 20 C -0.008 4.008 21 C -0.165 4.165 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.954 -1.704 13.901 17.182 hybrid contribution -0.487 1.092 0.110 1.201 sum -10.441 -0.612 14.011 17.484 Atomic orbital electron populations 1.22619 0.96493 1.02487 1.02588 1.21331 0.92792 0.97596 0.89934 0.91500 1.58797 1.67747 1.06970 1.04286 1.21037 0.94603 0.99869 0.93237 1.21792 0.96298 1.00226 0.96739 1.21526 0.97372 0.97585 0.84381 1.57690 1.16249 1.77260 1.33521 1.00024 0.71102 0.75819 0.71184 1.93284 1.47575 1.75709 1.86872 1.93281 1.70307 1.89673 1.50055 1.30971 1.45016 1.22880 1.18159 0.86587 1.26035 0.90499 1.06186 0.91619 1.69997 1.30317 1.41278 1.11176 0.85159 0.80066 0.74719 0.79418 1.17858 1.18522 1.17082 1.21479 0.78600 1.01401 0.99322 1.22023 1.01749 0.99163 0.93608 0.91973 0.92173 0.91739 0.83945 0.84141 0.90168 0.93426 0.88649 0.91638 0.90375 0.89126 0.90213 0.91262 0.88286 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.13 71.98 0.66 -1.93 16 2 C 0.10 1.73 2.94 44.92 0.13 1.86 16 3 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 4 N -0.85 -13.15 8.44 -168.67 -1.42 -14.58 16 5 C -0.07 -1.55 1.89 -10.77 -0.02 -1.57 16 6 C -0.11 -3.15 5.22 30.67 0.16 -2.99 16 7 C 0.12 4.08 6.38 86.35 0.55 4.63 16 8 N -1.01 -41.93 3.29 -512.90 -1.69 -43.62 16 9 S 2.72 152.10 4.97 -56.49 -0.28 151.82 16 10 O -1.04 -64.71 16.73 -128.00 -2.14 -66.85 16 11 O -1.04 -64.13 16.74 -128.00 -2.14 -66.27 16 12 C -1.04 -58.84 9.75 67.73 0.66 -58.18 16 13 H 0.12 6.00 7.81 -2.91 -0.02 5.98 16 14 C 0.07 3.94 5.46 84.65 0.46 4.40 16 15 N -0.90 -54.84 13.19 21.45 0.28 -54.56 16 16 Si 0.99 42.23 29.54 68.60 2.03 44.26 16 17 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 20 C 0.12 3.96 6.38 86.36 0.55 4.51 16 21 C -0.13 -3.27 5.04 30.67 0.15 -3.12 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.95 6.40 -2.39 -0.02 0.94 16 25 H 0.35 4.30 9.07 -89.69 -0.81 3.48 16 26 H 0.35 4.46 9.00 -89.70 -0.81 3.65 16 27 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.38 7.56 -2.39 -0.02 2.36 16 30 H 0.07 2.59 7.13 -2.39 -0.02 2.57 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.30 16.37 8.31 -92.71 -0.77 15.60 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.61 7.13 -2.39 -0.02 2.59 16 35 H 0.10 1.96 6.36 -2.39 -0.02 1.95 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.76 300.31 -2.59 -79.35 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.53 Total: 22.83 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 3.31 Total: -52.38 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -2.83 Total: -112.75 kcal Atomic # 8 Polarization: -128.83 SS G_CDS: -4.28 Total: -133.12 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 152.10 SS G_CDS: -0.28 Total: 151.82 kcal Total: -76.76 -2.59 -79.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.200 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds