Wall clock time and date at job start Mon Mar 30 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47169 * 2 1 4 4 C 1.46502 * 119.99907 * 86.90503 * 3 2 1 5 5 H 1.09001 * 109.50473 * 186.14009 * 4 3 2 6 6 C 1.53122 * 109.50518 * 66.05771 * 4 3 2 7 7 C 1.53120 * 109.16034 * 182.36646 * 6 4 3 8 8 C 1.53036 * 109.27908 * 57.65581 * 7 6 4 9 9 N 1.46851 * 109.51159 * 300.82443 * 8 7 6 10 10 C 1.46828 * 111.21216 * 61.75175 * 9 8 7 11 11 S 1.65595 * 119.99936 * 266.90075 * 3 2 1 12 12 O 1.42103 * 106.40286 * 23.54377 * 11 3 2 13 13 O 1.42104 * 106.40128 * 156.46052 * 11 3 2 14 14 C 1.76193 * 107.22069 * 269.99787 * 11 3 2 15 15 H 1.07997 * 119.99986 * 0.02562 * 14 11 3 16 16 C 1.37875 * 120.00104 * 179.97438 * 14 11 3 17 17 N 1.31523 * 120.00010 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 119.99993 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47154 * 89.99694 * 18 16 14 20 20 H 1.48503 * 109.47273 * 209.99374 * 18 16 14 21 21 H 1.48494 * 109.47167 * 329.99864 * 18 16 14 22 22 H 1.09004 * 109.47227 * 173.79157 * 1 2 3 23 23 H 1.08999 * 109.47439 * 293.79007 * 1 2 3 24 24 H 1.08999 * 109.47331 * 53.79088 * 1 2 3 25 25 H 1.09000 * 109.47242 * 239.99894 * 2 1 3 26 26 H 1.09005 * 109.46988 * 119.99903 * 2 1 3 27 27 H 1.09002 * 109.51827 * 62.46369 * 6 4 3 28 28 H 1.08999 * 109.57258 * 302.30131 * 6 4 3 29 29 H 1.09003 * 109.50262 * 297.71674 * 7 6 4 30 30 H 1.08995 * 109.50037 * 177.59926 * 7 6 4 31 31 H 1.08997 * 109.46375 * 60.83406 * 8 7 6 32 32 H 1.08997 * 109.46311 * 180.81923 * 8 7 6 33 33 H 1.00908 * 110.99670 * 185.83333 * 9 8 7 34 34 H 1.08994 * 109.46920 * 178.23343 * 10 9 8 35 35 H 1.09001 * 109.46440 * 58.25807 * 10 9 8 36 36 H 0.97000 * 119.99441 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1979 2.0946 1.2669 5 1 2.4599 3.1334 1.0657 6 6 3.3184 1.4315 2.0727 7 6 3.4596 2.1462 3.4195 8 6 2.1227 2.0926 4.1624 9 7 1.0842 2.7401 3.3507 10 6 0.8975 2.0426 2.0722 11 16 2.3674 2.1360 -1.4320 12 8 1.6104 1.4685 -2.4324 13 8 2.2684 3.5318 -1.1845 14 6 4.0617 1.8136 -1.7921 15 1 4.6533 1.2151 -1.1151 16 6 4.6322 2.3245 -2.9386 17 7 5.8969 2.0834 -3.2076 18 14 3.6089 3.3591 -4.1099 19 1 3.7066 4.7891 -3.7216 20 1 4.1161 3.1865 -5.4949 21 1 2.1906 2.9242 -4.0443 22 1 -0.3634 -1.0217 -0.1111 23 1 -0.3634 0.4145 0.9403 24 1 -0.3634 0.6071 -0.8292 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.2559 1.5049 1.5214 28 1 3.0757 0.3823 2.2407 29 1 3.7415 3.1857 3.2521 30 1 4.2270 1.6518 4.0151 31 1 1.8482 1.0531 4.3416 32 1 2.2158 2.6132 5.1155 33 1 0.2146 2.8022 3.8588 34 1 0.1009 2.5266 1.5073 35 1 0.6288 1.0033 2.2613 36 1 6.2982 2.4432 -4.0141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:56 Heat of formation + Delta-G solvation = -80.878224 kcal Electronic energy + Delta-G solvation = -19466.196481 eV Core-core repulsion = 16497.938134 eV Total energy + Delta-G solvation = -2968.258347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.88983 -35.76510 -35.34352 -34.38443 -32.99845 -31.86166 -30.45241 -28.30275 -26.36869 -23.80904 -22.73329 -21.98267 -19.37602 -18.70346 -17.54764 -16.79475 -16.40454 -15.25318 -15.11623 -14.50573 -14.02955 -13.82467 -13.66359 -13.37113 -13.20935 -13.15144 -12.81666 -12.50324 -12.28912 -11.98821 -11.60816 -11.35304 -11.05390 -10.82171 -10.73547 -10.64054 -10.50577 -10.40757 -10.26769 -10.22157 -9.71464 -9.18638 -9.07237 -8.43168 -8.23424 -6.78333 -5.31251 2.03352 3.08333 3.19396 3.28380 3.96994 4.04988 4.39037 4.61255 5.00036 5.05861 5.11068 5.28498 5.36268 5.41803 5.48086 5.63193 5.71606 5.72281 5.75594 5.80840 5.96130 6.02844 6.05522 6.13052 6.24426 6.29452 6.46993 6.53198 6.60818 6.77120 7.07200 7.39075 7.47695 7.50910 8.24185 8.73179 10.34107 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027298 B = 0.008111 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.452703 B = 3451.197645 C = 3828.128550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 N -0.995 5.995 4 C 0.155 3.845 5 H 0.110 0.890 6 C -0.135 4.135 7 C -0.117 4.117 8 C 0.058 3.942 9 N -0.689 5.689 10 C 0.052 3.948 11 S 2.674 3.326 12 O -1.005 7.005 13 O -1.008 7.008 14 C -1.015 5.015 15 H 0.121 0.879 16 C 0.153 3.847 17 N -0.824 5.824 18 Si 0.800 3.200 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.220 1.220 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.341 0.659 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -2.971 11.961 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.001 4.001 3 N -0.830 5.830 4 C 0.048 3.952 5 H 0.128 0.872 6 C -0.174 4.174 7 C -0.156 4.156 8 C -0.071 4.071 9 N -0.320 5.320 10 C -0.079 4.079 11 S 2.777 3.223 12 O -0.995 6.995 13 O -0.998 6.998 14 C -1.149 5.149 15 H 0.139 0.861 16 C -0.066 4.066 17 N -0.454 5.454 18 Si 0.620 3.380 19 H -0.170 1.170 20 H -0.179 1.179 21 H -0.142 1.142 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.374 -2.015 11.079 13.460 hybrid contribution -0.010 -0.742 -0.162 0.759 sum -7.383 -2.757 10.917 13.464 Atomic orbital electron populations 1.22451 0.96965 1.01890 1.02360 1.21020 0.93636 0.82790 1.02691 1.57603 1.81447 1.22624 1.21308 1.20704 0.93628 0.97559 0.83301 0.87230 1.22013 1.00115 0.99379 0.95871 1.21577 0.96088 1.01967 0.95937 1.21943 0.92697 0.96399 0.96094 1.60154 1.11440 1.54947 1.05507 1.22428 0.98492 0.96487 0.90460 1.01494 0.77119 0.72766 0.70893 1.93454 1.73895 1.75870 1.56315 1.93399 1.89367 1.32701 1.84359 1.30556 1.19702 1.46998 1.17658 0.86129 1.24432 0.94602 0.91969 0.95607 1.69996 1.11440 1.38671 1.25244 0.87894 0.84245 0.83257 0.82645 1.16985 1.17913 1.14157 0.92238 0.92527 0.91756 0.89857 0.91479 0.90424 0.92100 0.90724 0.91507 0.95498 0.91012 0.84127 0.90505 0.94348 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.81 37.16 0.36 -2.21 16 2 C 0.12 2.06 5.37 -4.04 -0.02 2.03 16 3 N -1.00 -19.52 2.73 -107.21 -0.29 -19.81 16 4 C 0.16 2.71 2.71 -67.85 -0.18 2.53 16 5 H 0.11 2.19 6.84 -51.93 -0.36 1.83 16 6 C -0.13 -2.05 5.39 -26.61 -0.14 -2.20 16 7 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 8 C 0.06 0.64 6.55 -3.83 -0.03 0.62 16 9 N -0.69 -8.55 6.84 -113.83 -0.78 -9.33 16 10 C 0.05 0.74 4.57 -3.84 -0.02 0.72 16 11 S 2.67 67.60 4.14 -107.50 -0.45 67.15 16 12 O -1.01 -26.84 14.88 -57.17 -0.85 -27.69 16 13 O -1.01 -27.28 15.35 -57.17 -0.88 -28.16 16 14 C -1.01 -28.55 10.29 30.60 0.31 -28.24 16 15 H 0.12 3.42 8.06 -52.49 -0.42 3.00 16 16 C 0.15 4.45 5.47 -17.82 -0.10 4.35 16 17 N -0.82 -24.01 13.96 55.43 0.77 -23.24 16 18 Si 0.80 20.85 26.54 -169.99 -4.51 16.34 16 19 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.22 -5.82 5.61 56.52 0.32 -5.50 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.72 5.30 -51.93 -0.28 0.44 16 24 H 0.06 1.07 7.99 -51.93 -0.42 0.65 16 25 H 0.08 1.46 7.68 -51.93 -0.40 1.06 16 26 H 0.07 0.93 6.73 -51.93 -0.35 0.58 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 0.85 6.85 -51.93 -0.36 0.49 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.34 3.37 8.90 -39.29 -0.35 3.02 16 34 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 35 H 0.04 0.50 6.03 -51.93 -0.31 0.18 16 36 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -32.23 290.11 -7.99 -40.23 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.41 Total: 4.16 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 0.03 Total: -24.04 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.30 Total: -52.37 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -1.73 Total: -55.84 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.51 Total: 16.34 kcal Atomic # 16 Polarization: 67.60 SS G_CDS: -0.45 Total: 67.15 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.23 -7.99 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.651 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds