Wall clock time and date at job start Mon Mar 30 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47169 * 2 1 4 4 C 1.46502 * 119.99907 * 86.90503 * 3 2 1 5 5 H 1.09001 * 109.50473 * 186.14009 * 4 3 2 6 6 C 1.53122 * 109.50518 * 66.05771 * 4 3 2 7 7 C 1.53120 * 109.16034 * 182.36646 * 6 4 3 8 8 C 1.53036 * 109.27908 * 57.65581 * 7 6 4 9 9 N 1.46851 * 109.51159 * 300.82443 * 8 7 6 10 10 C 1.46828 * 111.21216 * 61.75175 * 9 8 7 11 11 S 1.65595 * 119.99936 * 266.90075 * 3 2 1 12 12 O 1.42103 * 106.40286 * 23.54377 * 11 3 2 13 13 O 1.42104 * 106.40128 * 156.46052 * 11 3 2 14 14 C 1.76193 * 107.22069 * 269.99787 * 11 3 2 15 15 H 1.07997 * 119.99986 * 0.02562 * 14 11 3 16 16 C 1.37875 * 120.00104 * 179.97438 * 14 11 3 17 17 N 1.31523 * 120.00010 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 119.99993 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47154 * 89.99694 * 18 16 14 20 20 H 1.48503 * 109.47273 * 209.99374 * 18 16 14 21 21 H 1.48494 * 109.47167 * 329.99864 * 18 16 14 22 22 H 1.09004 * 109.47227 * 173.79157 * 1 2 3 23 23 H 1.08999 * 109.47439 * 293.79007 * 1 2 3 24 24 H 1.08999 * 109.47331 * 53.79088 * 1 2 3 25 25 H 1.09000 * 109.47242 * 239.99894 * 2 1 3 26 26 H 1.09005 * 109.46988 * 119.99903 * 2 1 3 27 27 H 1.09002 * 109.51827 * 62.46369 * 6 4 3 28 28 H 1.08999 * 109.57258 * 302.30131 * 6 4 3 29 29 H 1.09003 * 109.50262 * 297.71674 * 7 6 4 30 30 H 1.08995 * 109.50037 * 177.59926 * 7 6 4 31 31 H 1.08997 * 109.46375 * 60.83406 * 8 7 6 32 32 H 1.08997 * 109.46311 * 180.81923 * 8 7 6 33 33 H 1.00908 * 110.99670 * 185.83333 * 9 8 7 34 34 H 1.08994 * 109.46920 * 178.23343 * 10 9 8 35 35 H 1.09001 * 109.46440 * 58.25807 * 10 9 8 36 36 H 0.97000 * 119.99441 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1979 2.0946 1.2669 5 1 2.4599 3.1334 1.0657 6 6 3.3184 1.4315 2.0727 7 6 3.4596 2.1462 3.4195 8 6 2.1227 2.0926 4.1624 9 7 1.0842 2.7401 3.3507 10 6 0.8975 2.0426 2.0722 11 16 2.3674 2.1360 -1.4320 12 8 1.6104 1.4685 -2.4324 13 8 2.2684 3.5318 -1.1845 14 6 4.0617 1.8136 -1.7921 15 1 4.6533 1.2151 -1.1151 16 6 4.6322 2.3245 -2.9386 17 7 5.8969 2.0834 -3.2076 18 14 3.6089 3.3591 -4.1099 19 1 3.7066 4.7891 -3.7216 20 1 4.1161 3.1865 -5.4949 21 1 2.1906 2.9242 -4.0443 22 1 -0.3634 -1.0217 -0.1111 23 1 -0.3634 0.4145 0.9403 24 1 -0.3634 0.6071 -0.8292 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.2559 1.5049 1.5214 28 1 3.0757 0.3823 2.2407 29 1 3.7415 3.1857 3.2521 30 1 4.2270 1.6518 4.0151 31 1 1.8482 1.0531 4.3416 32 1 2.2158 2.6132 5.1155 33 1 0.2146 2.8022 3.8588 34 1 0.1009 2.5266 1.5073 35 1 0.6288 1.0033 2.2613 36 1 6.2982 2.4432 -4.0141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:55 Heat of formation + Delta-G solvation = -107.382936 kcal Electronic energy + Delta-G solvation = -19467.345811 eV Core-core repulsion = 16497.938134 eV Total energy + Delta-G solvation = -2969.407677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08881 -37.77592 -36.69150 -36.46982 -35.19827 -32.97476 -31.63034 -29.59562 -28.56569 -24.93617 -23.92227 -23.24627 -20.86570 -20.38262 -19.33956 -18.75342 -17.68099 -17.25047 -16.54143 -15.81606 -15.58534 -15.44655 -15.08448 -14.89840 -14.77964 -14.56003 -14.40916 -13.82346 -13.48169 -13.45779 -13.28244 -13.11384 -12.82421 -12.71035 -12.56492 -12.19637 -11.87490 -11.72540 -11.68382 -11.62264 -11.38266 -11.29716 -11.09424 -9.85161 -9.29824 -8.99058 -7.53832 0.09965 1.01003 1.10623 1.17862 1.86196 2.37002 2.41036 3.36078 3.37170 3.74953 3.90108 3.93712 4.11335 4.19704 4.32803 4.38061 4.45631 4.48209 4.60478 4.69269 4.72106 4.80297 4.96983 5.01331 5.02925 5.13908 5.23676 5.34561 5.37380 5.40879 5.52190 5.88162 5.99673 6.14346 6.51664 6.59814 8.18872 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027298 B = 0.008111 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.452703 B = 3451.197645 C = 3828.128550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 N -0.990 5.990 4 C 0.146 3.854 5 H 0.075 0.925 6 C -0.133 4.133 7 C -0.117 4.117 8 C 0.060 3.940 9 N -0.700 5.700 10 C 0.061 3.939 11 S 2.692 3.308 12 O -1.022 7.022 13 O -1.031 7.031 14 C -1.037 5.037 15 H 0.104 0.896 16 C 0.108 3.892 17 N -0.854 5.854 18 Si 0.821 3.179 19 H -0.241 1.241 20 H -0.216 1.216 21 H -0.229 1.229 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.359 0.641 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 -3.763 13.722 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 N -0.828 5.828 4 C 0.039 3.961 5 H 0.094 0.906 6 C -0.172 4.172 7 C -0.155 4.155 8 C -0.068 4.068 9 N -0.334 5.334 10 C -0.070 4.070 11 S 2.793 3.207 12 O -1.012 7.012 13 O -1.021 7.021 14 C -1.169 5.169 15 H 0.122 0.878 16 C -0.108 4.108 17 N -0.484 5.484 18 Si 0.638 3.362 19 H -0.164 1.164 20 H -0.138 1.138 21 H -0.151 1.151 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.179 0.821 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.741 -2.806 12.828 15.775 hybrid contribution 0.452 -0.545 -0.599 0.927 sum -8.290 -3.351 12.229 15.149 Atomic orbital electron populations 1.22430 0.95008 1.03411 1.02447 1.21370 0.95314 0.80841 1.03629 1.57236 1.81226 1.23991 1.20321 1.20916 0.96574 0.95768 0.82828 0.90638 1.22000 0.97801 1.00733 0.96683 1.21609 0.98225 1.00813 0.94861 1.21987 0.90938 0.97694 0.96218 1.60066 1.12895 1.55196 1.05247 1.22242 0.95893 0.97969 0.90893 1.00743 0.75599 0.72374 0.71959 1.93418 1.73427 1.76105 1.58263 1.93359 1.89198 1.34348 1.85180 1.31092 1.21884 1.46564 1.17410 0.87795 1.25163 0.95620 0.92988 0.97038 1.70017 1.12302 1.39678 1.26404 0.87546 0.82843 0.82349 0.83443 1.16419 1.13842 1.15126 0.89364 0.90372 0.94385 0.91474 0.88029 0.93354 0.90080 0.92410 0.89270 0.93759 0.88786 0.82093 0.91265 0.92094 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 9.81 71.98 0.71 -3.90 16 2 C 0.11 3.55 5.37 86.38 0.46 4.01 16 3 N -0.99 -38.64 2.73 -493.11 -1.35 -39.98 16 4 C 0.15 5.01 2.71 45.05 0.12 5.13 16 5 H 0.08 3.11 6.84 -2.39 -0.02 3.09 16 6 C -0.13 -3.92 5.39 30.68 0.17 -3.75 16 7 C -0.12 -2.71 6.09 30.65 0.19 -2.53 16 8 C 0.06 1.12 6.55 86.32 0.57 1.68 16 9 N -0.70 -15.33 6.84 -514.05 -3.52 -18.85 16 10 C 0.06 1.59 4.57 86.33 0.39 1.98 16 11 S 2.69 138.73 4.14 -56.49 -0.23 138.49 16 12 O -1.02 -55.25 14.88 -128.00 -1.90 -57.16 16 13 O -1.03 -57.08 15.35 -128.00 -1.97 -59.05 16 14 C -1.04 -60.25 10.29 67.73 0.70 -59.55 16 15 H 0.10 6.18 8.06 -2.91 -0.02 6.15 16 16 C 0.11 6.41 5.47 84.65 0.46 6.88 16 17 N -0.85 -50.55 13.96 21.45 0.30 -50.25 16 18 Si 0.82 42.27 26.54 68.60 1.82 44.09 16 19 H -0.24 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.22 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.23 -12.09 5.61 99.48 0.56 -11.53 16 22 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.08 1.71 5.30 -2.39 -0.01 1.69 16 24 H 0.04 1.20 7.99 -2.39 -0.02 1.19 16 25 H 0.07 2.32 7.68 -2.39 -0.02 2.30 16 26 H 0.10 2.48 6.73 -2.38 -0.02 2.47 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.03 6.85 -2.39 -0.02 2.01 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.36 5.82 8.90 -89.69 -0.80 5.02 16 34 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 35 H 0.06 1.32 6.03 -2.39 -0.01 1.30 16 36 H 0.29 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -71.21 290.11 -2.95 -74.16 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.13 Total: 18.59 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 3.76 Total: -50.05 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -4.56 Total: -109.07 kcal Atomic # 8 Polarization: -112.34 SS G_CDS: -3.87 Total: -116.21 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.82 Total: 44.09 kcal Atomic # 16 Polarization: 138.73 SS G_CDS: -0.23 Total: 138.49 kcal Total: -71.21 -2.95 -74.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.223 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds