Wall clock time and date at job start Mon Mar 30 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47081 * 2 1 4 4 C 1.46490 * 120.00365 * 272.93983 * 3 2 1 5 5 H 1.09003 * 109.50726 * 183.02657 * 4 3 2 6 6 C 1.53116 * 109.50495 * 303.11005 * 4 3 2 7 7 C 1.53120 * 109.16159 * 177.59272 * 6 4 3 8 8 C 1.53035 * 109.28056 * 302.34445 * 7 6 4 9 9 N 1.46852 * 109.52234 * 59.17823 * 8 7 6 10 10 C 1.46841 * 111.19656 * 298.25934 * 9 8 7 11 11 S 1.65600 * 119.99692 * 92.94457 * 3 2 1 12 12 O 1.42104 * 106.40544 * 336.45664 * 11 3 2 13 13 O 1.42103 * 106.40266 * 203.53935 * 11 3 2 14 14 C 1.76201 * 107.21947 * 89.99792 * 11 3 2 15 15 H 1.07996 * 120.00247 * 0.02562 * 14 11 3 16 16 C 1.37883 * 119.99802 * 180.02562 * 14 11 3 17 17 N 1.31508 * 120.00134 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99754 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.46784 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46877 * 59.99626 * 18 16 14 21 21 H 1.48503 * 109.46652 * 299.99964 * 18 16 14 22 22 H 1.08997 * 109.47161 * 187.21601 * 1 2 3 23 23 H 1.09006 * 109.46701 * 307.21907 * 1 2 3 24 24 H 1.09000 * 109.47276 * 67.21359 * 1 2 3 25 25 H 1.09001 * 109.47089 * 240.00479 * 2 1 3 26 26 H 1.09001 * 109.47318 * 120.00149 * 2 1 3 27 27 H 1.08998 * 109.52747 * 297.49785 * 6 4 3 28 28 H 1.09003 * 109.52669 * 57.69119 * 6 4 3 29 29 H 1.09000 * 109.50213 * 62.28864 * 7 6 4 30 30 H 1.09000 * 109.50670 * 182.36339 * 7 6 4 31 31 H 1.09000 * 109.46514 * 179.19544 * 8 7 6 32 32 H 1.09007 * 109.46207 * 299.16350 * 8 7 6 33 33 H 1.00901 * 110.99816 * 174.15716 * 9 8 7 34 34 H 1.09000 * 109.46742 * 301.72360 * 10 9 8 35 35 H 1.09008 * 109.46005 * 181.75403 * 10 9 8 36 36 H 0.97003 * 120.00184 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2012 2.0936 -1.2669 5 1 2.6186 3.0815 -1.0721 6 6 3.1566 1.3028 -2.1648 7 6 3.2950 2.0230 -3.5089 8 6 1.9123 2.1703 -4.1480 9 7 1.0359 2.9343 -3.2509 10 6 0.8501 2.2388 -1.9710 11 16 2.3637 2.1373 1.4323 12 8 1.6043 1.4706 2.4314 13 8 2.2654 3.5328 1.1833 14 6 4.0572 1.8151 1.7970 15 1 4.6507 1.2167 1.1217 16 6 4.6247 2.3270 2.9446 17 7 3.9022 3.0561 3.7667 18 14 6.4203 1.9860 3.3309 19 1 6.7847 2.6439 4.6114 20 1 7.2721 2.5227 2.2392 21 1 6.6316 0.5208 3.4489 22 1 -0.3633 -1.0195 0.1291 23 1 -0.3633 0.6216 0.8184 24 1 -0.3634 0.3980 -0.9475 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.1335 1.2341 -1.6861 28 1 2.7585 0.3012 -2.3276 29 1 3.7294 3.0099 -3.3499 30 1 3.9411 1.4429 -4.1678 31 1 2.0056 2.6954 -5.0986 32 1 1.4843 1.1825 -4.3194 33 1 0.1482 3.1267 -3.6902 34 1 0.4271 1.2508 -2.1525 35 1 0.1719 2.8138 -1.3404 36 1 2.9699 3.2335 3.5660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:59 Heat of formation + Delta-G solvation = -96.901136 kcal Electronic energy + Delta-G solvation = -19446.368237 eV Core-core repulsion = 16477.415085 eV Total energy + Delta-G solvation = -2968.953152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.91122 -35.69844 -35.32052 -34.35056 -33.13793 -31.85243 -30.52384 -28.27818 -25.49742 -23.92265 -22.69770 -21.95746 -19.41764 -19.20263 -17.88650 -16.55465 -16.32081 -15.15571 -14.76479 -14.50511 -14.00739 -13.90409 -13.73617 -13.66234 -13.28991 -13.16774 -12.64925 -12.31987 -12.26111 -11.98874 -11.30543 -11.08086 -10.97776 -10.87172 -10.74569 -10.61387 -10.56489 -10.42557 -10.29722 -10.24279 -10.00142 -9.16986 -8.78746 -8.39639 -8.13958 -7.15828 -5.36971 2.09037 3.23670 3.24295 3.45691 4.04587 4.22817 4.43390 4.72627 4.96639 5.02040 5.05145 5.28593 5.33389 5.45528 5.51103 5.59369 5.69857 5.71438 5.75974 5.77672 5.92831 6.01779 6.05644 6.09427 6.20009 6.32154 6.45344 6.46767 6.58257 6.74876 7.07059 7.38861 7.50185 7.63206 8.06743 8.64260 10.21524 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.007877 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.370645 B = 3554.013919 C = 4029.348138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 N -0.999 5.999 4 C 0.158 3.842 5 H 0.107 0.893 6 C -0.132 4.132 7 C -0.117 4.117 8 C 0.058 3.942 9 N -0.688 5.688 10 C 0.049 3.951 11 S 2.689 3.311 12 O -1.009 7.009 13 O -1.009 7.009 14 C -1.085 5.085 15 H 0.101 0.899 16 C 0.090 3.910 17 N -0.845 5.845 18 Si 1.078 2.922 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.276 1.276 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.341 0.659 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 -5.407 -13.750 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.002 4.002 3 N -0.833 5.833 4 C 0.051 3.949 5 H 0.125 0.875 6 C -0.171 4.171 7 C -0.156 4.156 8 C -0.071 4.071 9 N -0.320 5.320 10 C -0.082 4.082 11 S 2.792 3.208 12 O -0.999 6.999 13 O -0.999 6.999 14 C -1.219 5.219 15 H 0.120 0.880 16 C -0.129 4.129 17 N -0.474 5.474 18 Si 0.901 3.099 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.159 0.841 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.847 -4.220 -11.912 12.772 hybrid contribution -1.305 -1.395 -1.618 2.503 sum -3.152 -5.615 -13.530 14.984 Atomic orbital electron populations 1.22436 0.97020 1.01866 1.02214 1.21019 0.93667 0.83003 1.02508 1.57804 1.81460 1.22558 1.21522 1.20642 0.94201 0.96656 0.83441 0.87535 1.21976 1.00673 0.98998 0.95455 1.21576 0.96165 1.01597 0.96216 1.21936 0.94033 0.95645 0.95514 1.60144 1.18489 1.48483 1.04887 1.22487 0.98184 0.96813 0.90717 1.01148 0.76788 0.72443 0.70440 1.93409 1.73912 1.75994 1.56575 1.93415 1.89376 1.32661 1.84418 1.31524 1.21473 1.49285 1.19635 0.88026 1.25966 1.07637 0.89246 0.90016 1.70851 1.09965 1.30121 1.36491 0.83470 0.71986 0.77177 0.77235 1.19585 1.20076 1.20129 0.92265 0.91799 0.92612 0.91458 0.90081 0.90776 0.92002 0.90746 0.91530 0.90985 0.95536 0.84091 0.94316 0.90563 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 9.79 37.16 0.36 -2.32 16 2 C 0.12 2.11 5.60 -4.04 -0.02 2.08 16 3 N -1.00 -20.13 2.73 -107.22 -0.29 -20.42 16 4 C 0.16 2.82 2.65 -67.85 -0.18 2.64 16 5 H 0.11 2.21 6.97 -51.93 -0.36 1.84 16 6 C -0.13 -1.95 5.24 -26.61 -0.14 -2.09 16 7 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 8 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 9 N -0.69 -8.92 6.85 -113.81 -0.78 -9.70 16 10 C 0.05 0.73 5.12 -3.83 -0.02 0.71 16 11 S 2.69 71.01 4.27 -107.50 -0.46 70.55 16 12 O -1.01 -28.71 16.49 -57.17 -0.94 -29.66 16 13 O -1.01 -29.15 16.24 -57.17 -0.93 -30.08 16 14 C -1.08 -30.24 9.75 30.60 0.30 -29.94 16 15 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 16 C 0.09 2.58 5.46 -17.82 -0.10 2.48 16 17 N -0.85 -26.17 13.66 55.43 0.76 -25.41 16 18 Si 1.08 24.20 29.90 -169.99 -5.08 19.11 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.12 7.98 -51.93 -0.41 0.71 16 24 H 0.06 0.75 5.36 -51.93 -0.28 0.47 16 25 H 0.07 0.94 6.24 -51.93 -0.32 0.62 16 26 H 0.08 1.47 7.68 -51.93 -0.40 1.07 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.83 6.49 -51.93 -0.34 0.49 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.34 3.59 8.90 -39.29 -0.35 3.24 16 34 H 0.04 0.53 5.66 -51.93 -0.29 0.24 16 35 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 36 H 0.28 8.78 6.52 -40.82 -0.27 8.51 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -34.15 294.34 -8.47 -42.62 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.19 Total: 5.95 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 0.02 Total: -27.40 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.31 Total: -55.53 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -1.87 Total: -59.74 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.11 kcal Atomic # 16 Polarization: 71.01 SS G_CDS: -0.46 Total: 70.55 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.15 -8.47 -42.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.281 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds