Wall clock time and date at job start Mon Mar 30 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47081 * 2 1 4 4 C 1.46490 * 120.00365 * 272.93983 * 3 2 1 5 5 H 1.09003 * 109.50726 * 183.02657 * 4 3 2 6 6 C 1.53116 * 109.50495 * 303.11005 * 4 3 2 7 7 C 1.53120 * 109.16159 * 177.59272 * 6 4 3 8 8 C 1.53035 * 109.28056 * 302.34445 * 7 6 4 9 9 N 1.46852 * 109.52234 * 59.17823 * 8 7 6 10 10 C 1.46841 * 111.19656 * 298.25934 * 9 8 7 11 11 S 1.65600 * 119.99692 * 92.94457 * 3 2 1 12 12 O 1.42104 * 106.40544 * 336.45664 * 11 3 2 13 13 O 1.42103 * 106.40266 * 203.53935 * 11 3 2 14 14 C 1.76201 * 107.21947 * 89.99792 * 11 3 2 15 15 H 1.07996 * 120.00247 * 0.02562 * 14 11 3 16 16 C 1.37883 * 119.99802 * 180.02562 * 14 11 3 17 17 N 1.31508 * 120.00134 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99754 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.46784 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46877 * 59.99626 * 18 16 14 21 21 H 1.48503 * 109.46652 * 299.99964 * 18 16 14 22 22 H 1.08997 * 109.47161 * 187.21601 * 1 2 3 23 23 H 1.09006 * 109.46701 * 307.21907 * 1 2 3 24 24 H 1.09000 * 109.47276 * 67.21359 * 1 2 3 25 25 H 1.09001 * 109.47089 * 240.00479 * 2 1 3 26 26 H 1.09001 * 109.47318 * 120.00149 * 2 1 3 27 27 H 1.08998 * 109.52747 * 297.49785 * 6 4 3 28 28 H 1.09003 * 109.52669 * 57.69119 * 6 4 3 29 29 H 1.09000 * 109.50213 * 62.28864 * 7 6 4 30 30 H 1.09000 * 109.50670 * 182.36339 * 7 6 4 31 31 H 1.09000 * 109.46514 * 179.19544 * 8 7 6 32 32 H 1.09007 * 109.46207 * 299.16350 * 8 7 6 33 33 H 1.00901 * 110.99816 * 174.15716 * 9 8 7 34 34 H 1.09000 * 109.46742 * 301.72360 * 10 9 8 35 35 H 1.09008 * 109.46005 * 181.75403 * 10 9 8 36 36 H 0.97003 * 120.00184 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2012 2.0936 -1.2669 5 1 2.6186 3.0815 -1.0721 6 6 3.1566 1.3028 -2.1648 7 6 3.2950 2.0230 -3.5089 8 6 1.9123 2.1703 -4.1480 9 7 1.0359 2.9343 -3.2509 10 6 0.8501 2.2388 -1.9710 11 16 2.3637 2.1373 1.4323 12 8 1.6043 1.4706 2.4314 13 8 2.2654 3.5328 1.1833 14 6 4.0572 1.8151 1.7970 15 1 4.6507 1.2167 1.1217 16 6 4.6247 2.3270 2.9446 17 7 3.9022 3.0561 3.7667 18 14 6.4203 1.9860 3.3309 19 1 6.7847 2.6439 4.6114 20 1 7.2721 2.5227 2.2392 21 1 6.6316 0.5208 3.4489 22 1 -0.3633 -1.0195 0.1291 23 1 -0.3633 0.6216 0.8184 24 1 -0.3634 0.3980 -0.9475 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.1335 1.2341 -1.6861 28 1 2.7585 0.3012 -2.3276 29 1 3.7294 3.0099 -3.3499 30 1 3.9411 1.4429 -4.1678 31 1 2.0056 2.6954 -5.0986 32 1 1.4843 1.1825 -4.3194 33 1 0.1482 3.1267 -3.6902 34 1 0.4271 1.2508 -2.1525 35 1 0.1719 2.8138 -1.3404 36 1 2.9699 3.2335 3.5660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:59 Heat of formation + Delta-G solvation = -125.164289 kcal Electronic energy + Delta-G solvation = -19447.593819 eV Core-core repulsion = 16477.415085 eV Total energy + Delta-G solvation = -2970.178735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13680 -37.78761 -36.73862 -36.55629 -35.32946 -32.96979 -31.74803 -29.62385 -27.71044 -25.07199 -23.91754 -23.24169 -21.42415 -20.52580 -19.59230 -18.39847 -17.75230 -16.93237 -16.54498 -15.81300 -15.63170 -15.56178 -15.11645 -14.92028 -14.72217 -14.50958 -14.35119 -13.67471 -13.49661 -13.25166 -13.08577 -12.97849 -12.77015 -12.73744 -12.72367 -12.19623 -11.99416 -11.81931 -11.67808 -11.60842 -11.35890 -11.21636 -10.71984 -9.90783 -9.42221 -9.33209 -7.65803 0.09308 1.42866 1.47633 1.73540 2.29551 2.48279 2.56911 3.31736 3.46252 3.69291 3.85599 3.90476 4.07580 4.17334 4.26059 4.30362 4.38788 4.41248 4.53458 4.64193 4.67238 4.75575 4.91390 4.97882 4.98212 5.09274 5.17560 5.28701 5.33172 5.37406 5.50028 5.76356 5.85743 6.09925 6.46761 6.52900 7.91366 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.007877 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.370645 B = 3554.013919 C = 4029.348138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 N -0.992 5.992 4 C 0.149 3.851 5 H 0.067 0.933 6 C -0.128 4.128 7 C -0.116 4.116 8 C 0.058 3.942 9 N -0.701 5.701 10 C 0.057 3.943 11 S 2.693 3.307 12 O -1.039 7.039 13 O -1.045 7.045 14 C -1.101 5.101 15 H 0.119 0.881 16 C 0.033 3.967 17 N -0.877 5.877 18 Si 1.118 2.882 19 H -0.267 1.267 20 H -0.250 1.250 21 H -0.248 1.248 22 H 0.089 0.911 23 H 0.030 0.970 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.357 0.643 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -7.449 -16.497 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 N -0.830 5.830 4 C 0.042 3.958 5 H 0.085 0.915 6 C -0.167 4.167 7 C -0.154 4.154 8 C -0.070 4.070 9 N -0.335 5.335 10 C -0.074 4.074 11 S 2.796 3.204 12 O -1.029 7.029 13 O -1.035 7.035 14 C -1.234 5.234 15 H 0.138 0.862 16 C -0.176 4.176 17 N -0.508 5.508 18 Si 0.932 3.068 19 H -0.192 1.192 20 H -0.174 1.174 21 H -0.172 1.172 22 H 0.108 0.892 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.177 0.823 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.112 -6.263 -14.684 16.003 hybrid contribution -1.599 -0.780 -0.872 1.981 sum -2.711 -7.043 -15.556 17.290 Atomic orbital electron populations 1.22423 0.95543 1.03248 1.02050 1.21370 0.94996 0.81001 1.03694 1.57334 1.81461 1.23840 1.20329 1.20861 0.96763 0.95230 0.82940 0.91514 1.21973 0.98968 0.99899 0.95869 1.21618 0.97693 1.00817 0.95318 1.22026 0.92674 0.96729 0.95596 1.60068 1.19924 1.48955 1.04580 1.22279 0.95845 0.97902 0.91394 1.00654 0.76377 0.71864 0.71486 1.93354 1.74256 1.76301 1.58965 1.93354 1.89592 1.35214 1.85375 1.31949 1.22750 1.48869 1.19868 0.86241 1.27854 1.11933 0.87935 0.89917 1.71005 1.09106 1.32763 1.37899 0.83100 0.66700 0.78950 0.78086 1.19156 1.17407 1.17155 0.89250 0.95114 0.90488 0.87362 0.91700 0.92236 0.89654 0.92514 0.88604 0.88765 0.93675 0.82307 0.92009 0.92686 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 9.79 71.98 0.70 -4.26 16 2 C 0.11 3.69 5.60 86.38 0.48 4.17 16 3 N -0.99 -40.00 2.73 -493.13 -1.35 -41.35 16 4 C 0.15 5.24 2.65 45.05 0.12 5.36 16 5 H 0.07 2.88 6.97 -2.39 -0.02 2.86 16 6 C -0.13 -3.48 5.24 30.67 0.16 -3.32 16 7 C -0.12 -2.51 6.09 30.65 0.19 -2.32 16 8 C 0.06 1.08 6.55 86.32 0.57 1.64 16 9 N -0.70 -16.56 6.85 -513.98 -3.52 -20.08 16 10 C 0.06 1.63 5.12 86.33 0.44 2.07 16 11 S 2.69 147.69 4.27 -56.49 -0.24 147.45 16 12 O -1.04 -61.76 16.49 -128.00 -2.11 -63.87 16 13 O -1.05 -63.80 16.24 -128.00 -2.08 -65.88 16 14 C -1.10 -62.37 9.75 67.74 0.66 -61.71 16 15 H 0.12 6.11 7.81 -2.91 -0.02 6.09 16 16 C 0.03 1.95 5.46 84.66 0.46 2.41 16 17 N -0.88 -56.25 13.66 21.45 0.29 -55.95 16 18 Si 1.12 47.65 29.90 68.60 2.05 49.70 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.03 1.07 7.98 -2.38 -0.02 1.05 16 24 H 0.08 1.84 5.36 -2.39 -0.01 1.83 16 25 H 0.11 2.62 6.24 -2.39 -0.01 2.60 16 26 H 0.06 2.31 7.68 -2.39 -0.02 2.29 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.91 6.49 -2.39 -0.02 1.89 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.36 6.55 8.90 -89.69 -0.80 5.75 16 34 H 0.06 1.47 5.66 -2.39 -0.01 1.46 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.25 17.10 6.52 -92.71 -0.60 16.50 16 Total: -1.00 -78.38 294.34 -2.72 -81.10 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.45 Total: 24.83 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 3.79 Total: -55.95 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -4.57 Total: -117.38 kcal Atomic # 8 Polarization: -125.56 SS G_CDS: -4.19 Total: -129.75 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.05 Total: 49.70 kcal Atomic # 16 Polarization: 147.69 SS G_CDS: -0.24 Total: 147.45 kcal Total: -78.38 -2.72 -81.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.066 kcal (2) G-P(sol) polarization free energy of solvation -78.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds