Wall clock time and date at job start Mon Mar 30 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70063 * 2 1 4 4 C 1.52758 * 109.50939 * 239.88544 * 2 1 3 5 5 C 1.53041 * 109.38541 * 185.70589 * 4 2 1 6 6 C 1.53042 * 109.53870 * 61.23972 * 5 4 2 7 7 C 1.53195 * 109.31056 * 298.63590 * 6 5 4 8 8 H 1.09000 * 109.59018 * 294.85052 * 7 6 5 9 9 C 1.52997 * 109.58673 * 174.41920 * 7 6 5 10 10 N 1.46900 * 109.47361 * 179.81958 * 9 7 6 11 11 N 1.46925 * 109.58623 * 120.35697 * 2 1 3 12 12 S 1.65591 * 120.63290 * 353.41907 * 11 2 1 13 13 O 1.42105 * 106.40238 * 16.19977 * 12 11 2 14 14 O 1.42099 * 106.40416 * 149.11957 * 12 11 2 15 15 C 1.76206 * 107.21851 * 262.66247 * 12 11 2 16 16 H 1.08000 * 119.99863 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00032 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00043 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00075 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46801 * 90.00060 * 19 17 15 21 21 H 1.48497 * 109.47348 * 209.99982 * 19 17 15 22 22 H 1.48498 * 109.46980 * 330.00309 * 19 17 15 23 23 H 1.09004 * 109.47174 * 296.91812 * 1 2 3 24 24 H 1.08997 * 109.47284 * 56.91725 * 1 2 3 25 25 H 1.08993 * 109.47255 * 176.91970 * 1 2 3 26 26 H 1.09001 * 109.56612 * 65.66742 * 4 2 1 27 27 H 1.09001 * 109.38682 * 305.63457 * 4 2 1 28 28 H 1.09001 * 109.46006 * 301.22186 * 5 4 2 29 29 H 1.09000 * 109.45111 * 181.25517 * 5 4 2 30 30 H 1.09001 * 109.49842 * 178.68479 * 6 5 4 31 31 H 1.08994 * 109.49791 * 58.58742 * 6 5 4 32 32 H 1.08996 * 109.47397 * 299.82498 * 9 7 6 33 33 H 1.09004 * 109.46629 * 59.82162 * 9 7 6 34 34 H 1.00891 * 111.00177 * 180.02562 * 10 9 7 35 35 H 1.00906 * 110.99757 * 303.95535 * 10 9 7 36 36 H 0.97004 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2455 5 6 3.5638 -0.8461 -1.1727 6 6 3.9523 -1.6687 0.0580 7 6 3.4644 -0.9519 1.3210 8 1 3.9928 -0.0049 1.4310 9 6 3.7254 -1.8333 2.5441 10 7 3.2607 -1.1420 3.7540 11 7 2.0225 -0.6996 1.1944 12 16 0.9718 -1.2002 2.3723 13 8 -0.3258 -1.1649 1.7940 14 8 1.5370 -2.3728 2.9423 15 6 0.9856 0.0250 3.6387 16 1 1.6137 0.8978 3.5387 17 6 0.1945 -0.1306 4.7571 18 7 -0.5707 -1.1933 4.8786 19 14 0.2097 1.1679 6.0999 20 1 -0.8292 2.1894 5.8124 21 1 -0.0739 0.5286 7.4099 22 1 1.5440 1.8179 6.1448 23 1 -0.3634 0.4653 0.9164 24 1 -0.3634 0.5609 -0.8610 25 1 -0.3633 -1.0261 -0.0552 26 1 1.7631 -0.1565 -2.1350 27 1 1.5963 -1.7168 -1.2943 28 1 4.0057 0.1476 -1.0996 29 1 3.9311 -1.3416 -2.0714 30 1 5.0363 -1.7761 0.0964 31 1 3.4905 -2.6541 -0.0024 32 1 3.1878 -2.7751 2.4346 33 1 4.7939 -2.0324 2.6271 34 1 3.4224 -1.7039 4.5762 35 1 3.6973 -0.2367 3.8435 36 1 -1.1276 -1.3026 5.6653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:37 Heat of formation + Delta-G solvation = -41.678581 kcal Electronic energy + Delta-G solvation = -20244.238408 eV Core-core repulsion = 17277.679886 eV Total energy + Delta-G solvation = -2966.558523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.52934 -36.11511 -33.83354 -33.21646 -32.74844 -32.10935 -30.52972 -26.79624 -25.74535 -24.48229 -22.14769 -20.67418 -19.93200 -18.43371 -16.84031 -15.71788 -15.54959 -14.84158 -14.72898 -14.23748 -13.99799 -13.79180 -13.48051 -13.18218 -13.03572 -12.56298 -11.96458 -11.77231 -11.61322 -11.53240 -11.21952 -11.04980 -10.77188 -10.68173 -10.52826 -10.43766 -10.34419 -10.17845 -9.62754 -8.97156 -8.89175 -8.51156 -8.41044 -7.89934 -7.48357 -6.34778 -4.72655 2.66945 3.20575 3.27791 3.33343 4.28430 4.67125 4.95718 5.04071 5.16405 5.25509 5.41336 5.64723 5.70382 5.84181 5.92153 6.00219 6.06127 6.08290 6.14027 6.19260 6.27450 6.34618 6.43538 6.45789 6.62643 6.73448 6.97144 7.02526 7.27721 7.51932 7.66725 8.05580 8.12735 8.36152 8.46377 9.25980 10.59586 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.009754 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.431974 B = 2869.795380 C = 3262.564478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 H 0.056 0.944 4 C -0.130 4.130 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.167 3.833 8 H 0.055 0.945 9 C 0.028 3.972 10 N -0.806 5.806 11 N -1.000 6.000 12 S 2.737 3.263 13 O -1.017 7.017 14 O -0.994 6.994 15 C -0.952 4.952 16 H 0.090 0.910 17 C 0.132 3.868 18 N -0.862 5.862 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.011 0.989 34 H 0.344 0.656 35 H 0.321 0.679 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.570 1.936 -7.733 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.075 0.925 4 C -0.169 4.169 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.059 3.941 8 H 0.073 0.927 9 C -0.104 4.104 10 N -0.338 5.338 11 N -0.835 5.835 12 S 2.841 3.159 13 O -1.008 7.008 14 O -0.984 6.984 15 C -1.087 5.087 16 H 0.108 0.892 17 C -0.082 4.082 18 N -0.495 5.495 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.109 0.891 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.029 0.971 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.211 0.978 -7.995 10.811 hybrid contribution 1.393 1.361 1.366 2.379 sum 8.604 2.340 -6.630 11.111 Atomic orbital electron populations 1.22758 0.92221 1.05080 1.02185 1.20741 0.95102 0.94668 0.84640 0.92548 1.21922 0.95548 1.01426 0.98004 1.21447 0.96307 0.99968 0.97429 1.21905 1.00065 0.99788 0.95019 1.20744 0.82217 0.97043 0.94104 0.92724 1.22750 0.96443 1.01337 0.89874 1.59189 1.64221 1.05674 1.04684 1.58198 1.16603 1.74447 1.34295 0.99822 0.70065 0.74791 0.71266 1.93478 1.41000 1.88406 1.77879 1.93195 1.77156 1.50421 1.77599 1.30274 1.33172 1.24119 1.21140 0.89175 1.24539 0.91559 0.94776 0.97284 1.69904 1.23514 1.26306 1.29736 0.86415 0.78898 0.81298 0.80104 1.20024 1.20755 1.19255 0.89097 0.94627 0.89530 0.91715 0.91749 0.92291 0.92484 0.91840 0.91473 0.85595 0.97129 0.84196 0.86739 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 7.43 37.16 0.28 -2.99 16 2 C 0.16 2.79 3.50 -67.83 -0.24 2.56 16 3 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -1.91 5.34 -26.83 -0.14 -2.06 16 5 C -0.11 -1.48 5.89 -26.69 -0.16 -1.63 16 6 C -0.13 -1.83 5.37 -26.61 -0.14 -1.97 16 7 C 0.17 2.87 3.13 -67.60 -0.21 2.66 16 8 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 9 C 0.03 0.51 5.37 -3.83 -0.02 0.49 16 10 N -0.81 -16.11 4.19 -10.37 -0.04 -16.15 16 11 N -1.00 -20.29 3.30 -99.73 -0.33 -20.62 16 12 S 2.74 70.51 4.10 -107.50 -0.44 70.07 16 13 O -1.02 -28.67 11.99 -57.17 -0.69 -29.35 16 14 O -0.99 -27.06 12.24 -57.17 -0.70 -27.76 16 15 C -0.95 -25.40 7.27 30.60 0.22 -25.18 16 16 H 0.09 2.27 7.80 -52.49 -0.41 1.86 16 17 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 18 N -0.86 -25.38 13.19 55.43 0.73 -24.65 16 19 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H 0.09 2.08 6.30 -51.93 -0.33 1.75 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.88 6.47 -51.93 -0.34 1.55 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.13 2.66 5.75 -52.24 -0.30 2.36 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.34 6.69 9.08 -39.30 -0.36 6.34 16 35 H 0.32 5.73 8.94 -39.29 -0.35 5.38 16 36 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 282.70 15.07 4.26 4.26 Total: -1.00 -32.28 282.70 -8.18 -40.47 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.44 Total: 12.45 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -0.51 Total: -24.58 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.36 Total: -61.42 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -1.39 Total: -57.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 70.51 SS G_CDS: -0.44 Total: 70.07 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.28 -8.18 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.211 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds