Wall clock time and date at job start Mon Mar 30 2020 04:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70063 * 2 1 4 4 C 1.52758 * 109.50939 * 239.88544 * 2 1 3 5 5 C 1.53041 * 109.38541 * 185.70589 * 4 2 1 6 6 C 1.53042 * 109.53870 * 61.23972 * 5 4 2 7 7 C 1.53195 * 109.31056 * 298.63590 * 6 5 4 8 8 H 1.09000 * 109.59018 * 294.85052 * 7 6 5 9 9 C 1.52997 * 109.58673 * 174.41920 * 7 6 5 10 10 N 1.46900 * 109.47361 * 179.81958 * 9 7 6 11 11 N 1.46925 * 109.58623 * 120.35697 * 2 1 3 12 12 S 1.65591 * 120.63290 * 353.41907 * 11 2 1 13 13 O 1.42105 * 106.40238 * 16.19977 * 12 11 2 14 14 O 1.42099 * 106.40416 * 149.11957 * 12 11 2 15 15 C 1.76206 * 107.21851 * 262.66247 * 12 11 2 16 16 H 1.08000 * 119.99863 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00032 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00043 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00075 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46801 * 90.00060 * 19 17 15 21 21 H 1.48497 * 109.47348 * 209.99982 * 19 17 15 22 22 H 1.48498 * 109.46980 * 330.00309 * 19 17 15 23 23 H 1.09004 * 109.47174 * 296.91812 * 1 2 3 24 24 H 1.08997 * 109.47284 * 56.91725 * 1 2 3 25 25 H 1.08993 * 109.47255 * 176.91970 * 1 2 3 26 26 H 1.09001 * 109.56612 * 65.66742 * 4 2 1 27 27 H 1.09001 * 109.38682 * 305.63457 * 4 2 1 28 28 H 1.09001 * 109.46006 * 301.22186 * 5 4 2 29 29 H 1.09000 * 109.45111 * 181.25517 * 5 4 2 30 30 H 1.09001 * 109.49842 * 178.68479 * 6 5 4 31 31 H 1.08994 * 109.49791 * 58.58742 * 6 5 4 32 32 H 1.08996 * 109.47397 * 299.82498 * 9 7 6 33 33 H 1.09004 * 109.46629 * 59.82162 * 9 7 6 34 34 H 1.00891 * 111.00177 * 180.02562 * 10 9 7 35 35 H 1.00906 * 110.99757 * 303.95535 * 10 9 7 36 36 H 0.97004 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2455 5 6 3.5638 -0.8461 -1.1727 6 6 3.9523 -1.6687 0.0580 7 6 3.4644 -0.9519 1.3210 8 1 3.9928 -0.0049 1.4310 9 6 3.7254 -1.8333 2.5441 10 7 3.2607 -1.1420 3.7540 11 7 2.0225 -0.6996 1.1944 12 16 0.9718 -1.2002 2.3723 13 8 -0.3258 -1.1649 1.7940 14 8 1.5370 -2.3728 2.9423 15 6 0.9856 0.0250 3.6387 16 1 1.6137 0.8978 3.5387 17 6 0.1945 -0.1306 4.7571 18 7 -0.5707 -1.1933 4.8786 19 14 0.2097 1.1679 6.0999 20 1 -0.8292 2.1894 5.8124 21 1 -0.0739 0.5286 7.4099 22 1 1.5440 1.8179 6.1448 23 1 -0.3634 0.4653 0.9164 24 1 -0.3634 0.5609 -0.8610 25 1 -0.3633 -1.0261 -0.0552 26 1 1.7631 -0.1565 -2.1350 27 1 1.5963 -1.7168 -1.2943 28 1 4.0057 0.1476 -1.0996 29 1 3.9311 -1.3416 -2.0714 30 1 5.0363 -1.7761 0.0964 31 1 3.4905 -2.6541 -0.0024 32 1 3.1878 -2.7751 2.4346 33 1 4.7939 -2.0324 2.6271 34 1 3.4224 -1.7039 4.5762 35 1 3.6973 -0.2367 3.8435 36 1 -1.1276 -1.3026 5.6653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:36 Heat of formation + Delta-G solvation = -66.572902 kcal Electronic energy + Delta-G solvation = -20245.317907 eV Core-core repulsion = 17277.679886 eV Total energy + Delta-G solvation = -2967.638021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87194 -37.96326 -35.79284 -34.94841 -34.76731 -33.46104 -31.98996 -28.32368 -27.77952 -25.82828 -23.53749 -22.10291 -21.18036 -20.41979 -18.72009 -17.48732 -17.13115 -16.61554 -16.23376 -15.92621 -15.52179 -15.23264 -14.99289 -14.69545 -14.66101 -13.92174 -13.74999 -13.52307 -13.22256 -13.05724 -12.89065 -12.80265 -12.47891 -12.23131 -12.07763 -11.88058 -11.60757 -11.52106 -11.38449 -11.00424 -10.63814 -10.42861 -10.31559 -9.46257 -9.01286 -8.39550 -6.83274 0.78813 1.39772 1.41646 1.53857 2.37652 2.91630 3.08667 3.76924 3.93573 3.99183 4.13775 4.28895 4.37861 4.39605 4.54578 4.59994 4.69806 4.75930 4.85531 4.92163 4.97764 5.06076 5.11475 5.22522 5.27850 5.38628 5.46635 5.54120 5.65305 5.72461 5.87763 6.29531 6.41162 6.65226 7.02269 7.16432 8.54629 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.009754 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.431974 B = 2869.795380 C = 3262.564478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.079 0.921 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.126 4.126 7 C 0.159 3.841 8 H 0.076 0.924 9 C 0.028 3.972 10 N -0.829 5.829 11 N -1.001 6.001 12 S 2.738 3.262 13 O -1.054 7.054 14 O -1.020 7.020 15 C -0.956 4.956 16 H 0.100 0.900 17 C 0.074 3.926 18 N -0.912 5.912 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.250 1.250 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.342 0.658 35 H 0.331 0.669 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 3.733 -9.047 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.096 0.904 4 C -0.167 4.167 5 C -0.147 4.147 6 C -0.166 4.166 7 C 0.053 3.947 8 H 0.094 0.906 9 C -0.103 4.103 10 N -0.362 5.362 11 N -0.839 5.839 12 S 2.842 3.158 13 O -1.044 7.044 14 O -1.009 7.009 15 C -1.090 5.090 16 H 0.118 0.882 17 C -0.134 4.134 18 N -0.547 5.547 19 Si 0.793 3.207 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.173 1.173 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.592 2.780 -9.321 13.661 hybrid contribution 0.689 0.791 1.692 1.991 sum 10.281 3.571 -7.629 13.291 Atomic orbital electron populations 1.22575 0.94273 1.03420 1.01820 1.21004 0.93587 0.96114 0.85110 0.90356 1.21920 0.97095 1.00518 0.97136 1.21461 0.94592 1.00936 0.97664 1.21930 1.01793 0.98802 0.94081 1.21078 0.80315 0.98200 0.95126 0.90587 1.22640 0.97940 0.99923 0.89829 1.59039 1.65397 1.06528 1.05241 1.57778 1.17541 1.74714 1.33863 0.99502 0.69968 0.74645 0.71653 1.93469 1.43632 1.88844 1.78473 1.93201 1.77482 1.51562 1.78670 1.30552 1.32618 1.24433 1.21394 0.88175 1.25537 0.91094 0.96789 1.00001 1.70025 1.25090 1.28746 1.30831 0.85425 0.79740 0.78506 0.77061 1.19582 1.20263 1.17335 0.92869 0.90987 0.92349 0.88745 0.93365 0.90577 0.89818 0.88664 0.93085 0.89042 0.93564 0.84461 0.85530 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.47 7.43 71.98 0.54 -5.94 16 2 C 0.15 5.04 3.50 44.83 0.16 5.20 16 3 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 4 C -0.13 -3.36 5.34 30.53 0.16 -3.20 16 5 C -0.11 -2.32 5.89 30.62 0.18 -2.14 16 6 C -0.13 -3.19 5.37 30.67 0.16 -3.02 16 7 C 0.16 5.12 3.13 44.97 0.14 5.26 16 8 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 9 C 0.03 1.01 5.37 86.30 0.46 1.47 16 10 N -0.83 -32.86 4.19 -186.72 -0.78 -33.65 16 11 N -1.00 -39.81 3.30 -469.43 -1.55 -41.36 16 12 S 2.74 144.84 4.10 -56.49 -0.23 144.61 16 13 O -1.05 -62.19 11.99 -128.00 -1.53 -63.73 16 14 O -1.02 -57.59 12.24 -128.00 -1.57 -59.16 16 15 C -0.96 -51.48 7.27 67.73 0.49 -50.99 16 16 H 0.10 5.00 7.80 -2.91 -0.02 4.97 16 17 C 0.07 4.15 5.46 84.65 0.46 4.62 16 18 N -0.91 -55.48 13.19 21.45 0.28 -55.20 16 19 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 23 H 0.05 2.50 6.30 -2.38 -0.02 2.49 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.06 2.63 6.47 -2.39 -0.02 2.61 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 3.93 5.75 -7.25 -0.04 3.89 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.34 13.45 9.08 -89.70 -0.81 12.64 16 35 H 0.33 11.44 8.94 -89.69 -0.80 10.64 16 36 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -73.09 282.70 -1.15 -74.24 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.56 Total: 38.19 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 2.76 Total: -48.75 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -2.05 Total: -130.21 kcal Atomic # 8 Polarization: -119.79 SS G_CDS: -3.10 Total: -122.89 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 144.84 SS G_CDS: -0.23 Total: 144.61 kcal Total: -73.09 -1.15 -74.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.666 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds