Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.70339 * 2 1 4 4 C 1.52767 * 109.42925 * 120.16787 * 2 1 3 5 5 C 1.53039 * 109.38660 * 65.42214 * 4 2 1 6 6 C 1.53037 * 109.53812 * 61.24014 * 5 4 2 7 7 C 1.53194 * 109.31083 * 298.63366 * 6 5 4 8 8 H 1.08994 * 109.58749 * 294.84574 * 7 6 5 9 9 C 1.53002 * 109.58387 * 174.42052 * 7 6 5 10 10 N 1.46904 * 109.47233 * 67.93817 * 9 7 6 11 11 N 1.46923 * 108.77538 * 54.63997 * 7 6 5 12 12 S 1.65601 * 120.63394 * 126.36895 * 11 7 6 13 13 O 1.42098 * 106.40013 * 325.18698 * 12 11 7 14 14 O 1.42099 * 106.40178 * 192.27046 * 12 11 7 15 15 C 1.76193 * 107.22027 * 78.72768 * 12 11 7 16 16 H 1.07998 * 120.00162 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00156 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99849 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00032 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.46924 * 270.00055 * 19 17 15 21 21 H 1.48498 * 109.47105 * 30.00180 * 19 17 15 22 22 H 1.48495 * 109.46975 * 150.00201 * 19 17 15 23 23 H 1.09004 * 109.47663 * 180.35729 * 1 2 3 24 24 H 1.09001 * 109.47481 * 300.35202 * 1 2 3 25 25 H 1.08994 * 109.47162 * 60.35226 * 1 2 3 26 26 H 1.09003 * 109.56461 * 305.38374 * 4 2 1 27 27 H 1.09003 * 109.38236 * 185.34986 * 4 2 1 28 28 H 1.08995 * 109.46002 * 301.22021 * 5 4 2 29 29 H 1.09001 * 109.46065 * 181.25865 * 5 4 2 30 30 H 1.08995 * 109.50058 * 178.68358 * 6 5 4 31 31 H 1.09003 * 109.50130 * 58.58546 * 6 5 4 32 32 H 1.09006 * 109.47090 * 187.93479 * 9 7 6 33 33 H 1.08993 * 109.47970 * 307.93518 * 9 7 6 34 34 H 1.00905 * 110.99832 * 61.10730 * 10 9 7 35 35 H 1.00900 * 111.00299 * 185.06296 * 10 9 7 36 36 H 0.96998 * 120.00246 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0381 -0.7240 1.2455 5 6 1.6409 -2.2001 1.1727 6 6 2.2842 -2.8431 -0.0581 7 6 1.7739 -2.1422 -1.3210 8 1 0.7043 -2.3204 -1.4310 9 6 2.5157 -2.6850 -2.5441 10 7 2.1300 -4.0845 -2.7695 11 7 2.0225 -0.6997 -1.1945 12 16 2.8481 0.1209 -2.3724 13 8 3.8286 -0.7767 -2.8745 14 8 3.1663 1.3937 -1.8268 15 6 1.7190 0.4137 -3.6930 16 1 0.6990 0.0669 -3.6183 17 6 2.1374 1.0867 -4.8213 18 7 3.3794 1.5095 -4.9121 19 14 0.9401 1.3978 -6.2211 20 1 0.9938 0.2646 -7.1794 21 1 -0.4361 1.5213 -5.6771 22 1 1.3110 2.6547 -6.9195 23 1 -0.3634 -1.0276 0.0064 24 1 -0.3634 0.5193 0.8868 25 1 -0.3633 0.5083 -0.8931 26 1 1.5987 -0.2724 2.1350 27 1 3.1239 -0.6414 1.2942 28 1 0.5564 -2.2811 1.0996 29 1 1.9834 -2.7132 2.0713 30 1 2.0200 -3.8999 -0.0965 31 1 3.3678 -2.7406 0.0023 32 1 2.2555 -2.0908 -3.4202 33 1 3.5905 -2.6276 -2.3724 34 1 1.1401 -4.1622 -2.9493 35 1 2.6670 -4.4911 -3.5208 36 1 3.6737 1.9832 -5.7057 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -94.233967 kcal Electronic energy + Delta-G solvation = -19811.120533 eV Core-core repulsion = 16842.283037 eV Total energy + Delta-G solvation = -2968.837495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.74991 -35.83357 -34.15458 -33.89579 -33.12303 -31.90316 -30.88686 -27.06807 -26.17407 -24.73717 -22.63433 -21.13002 -19.35228 -18.52036 -17.18596 -16.23168 -15.47679 -15.23257 -14.79127 -14.37045 -14.29440 -13.82256 -13.70775 -13.25062 -13.08456 -12.87001 -12.24759 -12.00881 -11.88745 -11.51383 -11.28699 -11.27488 -11.21939 -10.68400 -10.64258 -10.57392 -10.34856 -10.27675 -10.05112 -9.95475 -9.38699 -9.27311 -8.89103 -8.18506 -8.07915 -6.72262 -5.33934 2.26724 3.02424 3.09987 3.16381 4.01695 4.41538 4.60818 5.15317 5.16207 5.18410 5.24973 5.46112 5.66653 5.76332 5.79273 5.83484 5.88340 5.94354 6.09484 6.17201 6.24673 6.31587 6.38631 6.41467 6.51713 6.55687 6.62561 6.81663 6.92161 7.04219 7.29978 7.48372 7.72738 7.87135 7.95348 8.86188 10.20870 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.009145 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.134364 B = 3061.011298 C = 3422.175753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.102 0.898 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.167 3.833 8 H 0.059 0.941 9 C 0.027 3.973 10 N -0.848 5.848 11 N -1.004 6.004 12 S 2.715 3.285 13 O -1.003 7.003 14 O -1.008 7.008 15 C -1.020 5.020 16 H 0.100 0.900 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.917 3.083 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.329 0.671 35 H 0.342 0.658 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -6.695 7.044 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.119 0.881 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.156 4.156 7 C 0.060 3.940 8 H 0.077 0.923 9 C -0.103 4.103 10 N -0.378 5.378 11 N -0.840 5.840 12 S 2.818 3.182 13 O -0.992 6.992 14 O -0.998 6.998 15 C -1.153 5.153 16 H 0.119 0.881 17 C -0.084 4.084 18 N -0.474 5.474 19 Si 0.741 3.259 20 H -0.193 1.193 21 H -0.187 1.187 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.373 -6.438 7.765 10.994 hybrid contribution -1.555 0.524 -2.033 2.612 sum -5.928 -5.914 5.732 10.148 Atomic orbital electron populations 1.22174 0.96107 1.01896 1.01903 1.20726 0.93839 0.96908 0.84594 0.88052 1.21823 1.01339 0.96019 0.97421 1.21530 1.00545 0.95537 0.97911 1.21820 1.00614 0.99439 0.93775 1.20660 0.98425 0.79772 0.95136 0.92272 1.22908 1.02866 0.88070 0.96491 1.58791 1.09326 1.18893 1.50785 1.58214 1.75300 1.15927 1.34538 1.00451 0.73900 0.71441 0.72418 1.93366 1.60527 1.65226 1.80106 1.93321 1.84424 1.41960 1.80110 1.30634 1.13862 1.50487 1.20336 0.88132 1.24733 0.95276 0.90219 0.98209 1.69893 1.15921 1.31454 1.30168 0.86214 0.81030 0.78486 0.80160 1.19284 1.18671 1.19918 0.92437 0.92393 0.92001 0.91554 0.91808 0.92006 0.92579 0.90700 0.91939 0.92527 0.86885 0.85970 0.84610 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.02 37.16 0.34 -2.09 16 2 C 0.15 2.59 3.27 -67.82 -0.22 2.36 16 3 H 0.10 1.97 6.71 -51.93 -0.35 1.62 16 4 C -0.13 -1.86 5.53 -26.83 -0.15 -2.01 16 5 C -0.12 -1.57 5.68 -26.69 -0.15 -1.73 16 6 C -0.12 -1.81 5.22 -26.61 -0.14 -1.95 16 7 C 0.17 2.99 2.74 -67.60 -0.18 2.80 16 8 H 0.06 0.98 7.52 -51.93 -0.39 0.59 16 9 C 0.03 0.53 4.52 -3.82 -0.02 0.51 16 10 N -0.85 -12.79 9.29 -10.37 -0.10 -12.88 16 11 N -1.00 -20.54 3.00 -99.73 -0.30 -20.84 16 12 S 2.72 71.46 4.44 -107.50 -0.48 70.98 16 13 O -1.00 -27.92 13.40 -57.17 -0.77 -28.69 16 14 O -1.01 -29.47 16.38 -57.17 -0.94 -30.41 16 15 C -1.02 -27.73 8.81 30.60 0.27 -27.46 16 16 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 17 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 18 N -0.84 -24.63 13.19 55.43 0.73 -23.90 16 19 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H 0.06 0.79 5.74 -51.93 -0.30 0.49 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.77 6.49 -51.93 -0.34 0.44 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.25 5.80 -51.93 -0.30 0.95 16 33 H 0.11 2.45 6.36 -51.93 -0.33 2.12 16 34 H 0.33 4.36 9.05 -39.29 -0.36 4.00 16 35 H 0.34 4.73 9.08 -39.29 -0.36 4.37 16 36 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -32.63 290.52 -8.06 -40.69 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.21 Total: 11.22 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -0.36 Total: -25.96 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.34 Total: -57.62 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -1.70 Total: -59.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 71.46 SS G_CDS: -0.48 Total: 70.98 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.63 -8.06 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.545 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds