Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.70339 * 2 1 4 4 C 1.52767 * 109.42925 * 120.16787 * 2 1 3 5 5 C 1.53039 * 109.38660 * 65.42214 * 4 2 1 6 6 C 1.53037 * 109.53812 * 61.24014 * 5 4 2 7 7 C 1.53194 * 109.31083 * 298.63366 * 6 5 4 8 8 H 1.08994 * 109.58749 * 294.84574 * 7 6 5 9 9 C 1.53002 * 109.58387 * 174.42052 * 7 6 5 10 10 N 1.46904 * 109.47233 * 67.93817 * 9 7 6 11 11 N 1.46923 * 108.77538 * 54.63997 * 7 6 5 12 12 S 1.65601 * 120.63394 * 126.36895 * 11 7 6 13 13 O 1.42098 * 106.40013 * 325.18698 * 12 11 7 14 14 O 1.42099 * 106.40178 * 192.27046 * 12 11 7 15 15 C 1.76193 * 107.22027 * 78.72768 * 12 11 7 16 16 H 1.07998 * 120.00162 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00156 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99849 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00032 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.46924 * 270.00055 * 19 17 15 21 21 H 1.48498 * 109.47105 * 30.00180 * 19 17 15 22 22 H 1.48495 * 109.46975 * 150.00201 * 19 17 15 23 23 H 1.09004 * 109.47663 * 180.35729 * 1 2 3 24 24 H 1.09001 * 109.47481 * 300.35202 * 1 2 3 25 25 H 1.08994 * 109.47162 * 60.35226 * 1 2 3 26 26 H 1.09003 * 109.56461 * 305.38374 * 4 2 1 27 27 H 1.09003 * 109.38236 * 185.34986 * 4 2 1 28 28 H 1.08995 * 109.46002 * 301.22021 * 5 4 2 29 29 H 1.09001 * 109.46065 * 181.25865 * 5 4 2 30 30 H 1.08995 * 109.50058 * 178.68358 * 6 5 4 31 31 H 1.09003 * 109.50130 * 58.58546 * 6 5 4 32 32 H 1.09006 * 109.47090 * 187.93479 * 9 7 6 33 33 H 1.08993 * 109.47970 * 307.93518 * 9 7 6 34 34 H 1.00905 * 110.99832 * 61.10730 * 10 9 7 35 35 H 1.00900 * 111.00299 * 185.06296 * 10 9 7 36 36 H 0.96998 * 120.00246 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0381 -0.7240 1.2455 5 6 1.6409 -2.2001 1.1727 6 6 2.2842 -2.8431 -0.0581 7 6 1.7739 -2.1422 -1.3210 8 1 0.7043 -2.3204 -1.4310 9 6 2.5157 -2.6850 -2.5441 10 7 2.1300 -4.0845 -2.7695 11 7 2.0225 -0.6997 -1.1945 12 16 2.8481 0.1209 -2.3724 13 8 3.8286 -0.7767 -2.8745 14 8 3.1663 1.3937 -1.8268 15 6 1.7190 0.4137 -3.6930 16 1 0.6990 0.0669 -3.6183 17 6 2.1374 1.0867 -4.8213 18 7 3.3794 1.5095 -4.9121 19 14 0.9401 1.3978 -6.2211 20 1 0.9938 0.2646 -7.1794 21 1 -0.4361 1.5213 -5.6771 22 1 1.3110 2.6547 -6.9195 23 1 -0.3634 -1.0276 0.0064 24 1 -0.3634 0.5193 0.8868 25 1 -0.3633 0.5083 -0.8931 26 1 1.5987 -0.2724 2.1350 27 1 3.1239 -0.6414 1.2942 28 1 0.5564 -2.2811 1.0996 29 1 1.9834 -2.7132 2.0713 30 1 2.0200 -3.8999 -0.0965 31 1 3.3678 -2.7406 0.0023 32 1 2.2555 -2.0908 -3.4202 33 1 3.5905 -2.6276 -2.3724 34 1 1.1401 -4.1622 -2.9493 35 1 2.6670 -4.4911 -3.5208 36 1 3.6737 1.9832 -5.7057 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -121.173743 kcal Electronic energy + Delta-G solvation = -19812.288729 eV Core-core repulsion = 16842.283037 eV Total energy + Delta-G solvation = -2970.005692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12776 -37.81020 -36.18096 -35.56110 -35.20970 -33.24387 -32.22525 -28.39716 -28.24858 -26.09645 -23.93872 -22.60711 -20.98873 -20.31509 -18.95761 -18.09133 -17.12284 -16.97253 -16.37050 -16.04973 -15.64003 -15.42128 -15.22777 -14.93345 -14.47254 -14.26296 -13.97135 -13.47526 -13.33853 -13.26843 -13.04252 -12.86421 -12.67290 -12.43815 -12.34851 -12.19281 -12.02794 -11.81909 -11.49974 -11.29534 -11.26799 -11.04079 -10.86124 -9.70410 -9.51924 -8.76398 -7.49405 0.32117 1.28615 1.29292 1.45282 2.16225 2.54557 2.75357 3.62209 3.73854 3.91748 3.98112 4.04409 4.16200 4.36838 4.38331 4.46694 4.55539 4.65565 4.72644 4.83865 4.93006 5.03657 5.10919 5.17827 5.21884 5.22897 5.30648 5.34184 5.42155 5.56462 5.66183 5.88286 6.07093 6.23616 6.68345 6.75339 8.17905 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.009145 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.134364 B = 3061.011298 C = 3422.175753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.072 0.928 4 C -0.125 4.125 5 C -0.111 4.111 6 C -0.114 4.114 7 C 0.163 3.837 8 H 0.082 0.918 9 C 0.034 3.966 10 N -0.832 5.832 11 N -1.000 6.000 12 S 2.715 3.285 13 O -1.031 7.031 14 O -1.050 7.050 15 C -1.036 5.036 16 H 0.114 0.886 17 C 0.071 3.929 18 N -0.894 5.894 19 Si 0.985 3.015 20 H -0.254 1.254 21 H -0.249 1.249 22 H -0.263 1.263 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.041 0.959 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.081 0.919 34 H 0.345 0.655 35 H 0.350 0.650 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 -8.137 7.980 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.090 0.910 4 C -0.164 4.164 5 C -0.149 4.149 6 C -0.153 4.153 7 C 0.057 3.943 8 H 0.100 0.900 9 C -0.098 4.098 10 N -0.363 5.363 11 N -0.840 5.840 12 S 2.819 3.181 13 O -1.021 7.021 14 O -1.040 7.040 15 C -1.169 5.169 16 H 0.132 0.868 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.804 3.196 20 H -0.178 1.178 21 H -0.172 1.172 22 H -0.187 1.187 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.085 -7.894 8.713 13.727 hybrid contribution -0.686 0.913 -2.257 2.529 sum -7.771 -6.981 6.456 12.280 Atomic orbital electron populations 1.22144 0.93489 1.03331 1.02500 1.21065 0.95965 0.95733 0.84684 0.90951 1.21848 1.00501 0.97184 0.96858 1.21538 1.01557 0.94105 0.97667 1.21812 0.99564 1.00412 0.93486 1.20919 0.99506 0.78080 0.95794 0.89974 1.22583 1.01313 0.89858 0.96047 1.58710 1.10557 1.15817 1.51264 1.57792 1.75045 1.17001 1.34116 1.00086 0.74263 0.70839 0.72934 1.93342 1.62228 1.65396 1.81109 1.93255 1.85435 1.44423 1.80896 1.30947 1.14553 1.50463 1.20929 0.86799 1.25976 0.97193 0.89585 1.01393 1.69992 1.18212 1.32773 1.31571 0.85197 0.78695 0.79196 0.76543 1.17765 1.17192 1.18698 0.90511 0.89292 0.93951 0.88190 0.93524 0.89995 0.89932 0.88715 0.93941 0.96059 0.90032 0.84234 0.83766 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 9.02 71.98 0.65 -3.62 16 2 C 0.13 4.54 3.27 44.83 0.15 4.69 16 3 H 0.07 2.90 6.71 -2.39 -0.02 2.89 16 4 C -0.12 -3.37 5.53 30.53 0.17 -3.20 16 5 C -0.11 -2.53 5.68 30.62 0.17 -2.36 16 6 C -0.11 -3.24 5.22 30.67 0.16 -3.08 16 7 C 0.16 5.63 2.74 44.98 0.12 5.76 16 8 H 0.08 2.48 7.52 -2.39 -0.02 2.46 16 9 C 0.03 1.33 4.52 86.30 0.39 1.72 16 10 N -0.83 -23.95 9.29 -186.71 -1.74 -25.68 16 11 N -1.00 -41.22 3.00 -469.43 -1.41 -42.63 16 12 S 2.71 149.11 4.44 -56.49 -0.25 148.86 16 13 O -1.03 -60.69 13.40 -128.00 -1.72 -62.41 16 14 O -1.05 -64.72 16.38 -128.00 -2.10 -66.81 16 15 C -1.04 -57.58 8.81 67.73 0.60 -56.99 16 16 H 0.11 5.78 7.81 -2.91 -0.02 5.75 16 17 C 0.07 3.99 5.46 84.66 0.46 4.46 16 18 N -0.89 -53.93 13.19 21.45 0.28 -53.65 16 19 Si 0.99 41.56 29.54 68.60 2.03 43.58 16 20 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H 0.08 1.79 5.74 -2.39 -0.01 1.78 16 24 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.59 6.49 -2.39 -0.02 1.58 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.02 0.97 5.80 -2.38 -0.01 0.96 16 33 H 0.08 3.70 6.36 -2.39 -0.02 3.69 16 34 H 0.35 8.31 9.05 -89.69 -0.81 7.50 16 35 H 0.35 9.34 9.08 -89.69 -0.81 8.52 16 36 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -74.77 290.52 -2.55 -77.32 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.53 Total: 34.05 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 2.87 Total: -52.63 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -2.86 Total: -121.96 kcal Atomic # 8 Polarization: -125.41 SS G_CDS: -3.81 Total: -129.22 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 149.11 SS G_CDS: -0.25 Total: 148.86 kcal Total: -74.77 -2.55 -77.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.849 kcal (2) G-P(sol) polarization free energy of solvation -74.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds