Wall clock time and date at job start Mon Mar 30 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.58358 * 2 1 4 4 C 1.53190 * 109.58918 * 239.71584 * 2 1 3 5 5 C 1.53040 * 109.31118 * 294.84493 * 4 2 1 6 6 C 1.53033 * 109.54032 * 298.63641 * 5 4 2 7 7 C 1.53192 * 109.31336 * 61.36508 * 6 5 4 8 8 H 1.09003 * 109.58721 * 65.29328 * 7 6 5 9 9 C 1.52999 * 109.58784 * 185.57641 * 7 6 5 10 10 N 1.46903 * 109.47248 * 301.99483 * 9 7 6 11 11 N 1.46930 * 108.89274 * 305.43531 * 7 6 5 12 12 S 1.65595 * 120.62779 * 233.53753 * 11 7 6 13 13 O 1.42102 * 106.40049 * 187.23549 * 12 11 7 14 14 O 1.42103 * 106.40630 * 320.15706 * 12 11 7 15 15 C 1.76202 * 107.21859 * 73.69815 * 12 11 7 16 16 H 1.08001 * 120.00071 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99925 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00215 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00041 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46882 * 60.00181 * 19 17 15 21 21 H 1.48497 * 109.47375 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46971 * 300.00757 * 19 17 15 23 23 H 1.08995 * 109.47144 * 180.28289 * 1 2 3 24 24 H 1.08998 * 109.47191 * 300.28877 * 1 2 3 25 25 H 1.09006 * 109.46750 * 60.28665 * 1 2 3 26 26 H 1.09008 * 109.49715 * 174.89954 * 4 2 1 27 27 H 1.08993 * 109.52519 * 54.81697 * 4 2 1 28 28 H 1.09003 * 109.46127 * 178.61154 * 5 4 2 29 29 H 1.09005 * 109.45619 * 58.66113 * 5 4 2 30 30 H 1.08995 * 109.50328 * 301.41353 * 6 5 4 31 31 H 1.09006 * 109.52218 * 181.33135 * 6 5 4 32 32 H 1.08999 * 109.47440 * 181.99358 * 9 7 6 33 33 H 1.08996 * 109.47121 * 61.99097 * 9 7 6 34 34 H 1.00894 * 110.99981 * 56.04027 * 10 9 7 35 35 H 1.00896 * 110.99970 * 179.97438 * 10 9 7 36 36 H 0.97004 * 120.00223 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 1.6416 -2.2026 -1.1728 6 6 2.2801 -2.8464 0.0600 7 6 1.7692 -2.1426 1.3211 8 1 0.6991 -2.3194 1.4302 9 6 2.5064 -2.6865 2.5465 10 7 2.3043 -4.1389 2.6347 11 7 2.0198 -0.7003 1.1956 12 16 2.8420 0.1190 2.3766 13 8 2.7636 1.4969 2.0379 14 8 2.3881 -0.4033 3.6178 15 6 4.5399 -0.3314 2.2383 16 1 4.8532 -1.0283 1.4751 17 6 5.4684 0.2059 3.1045 18 7 5.0868 1.0541 4.0341 19 14 7.2685 -0.2711 2.9574 20 1 7.7722 0.1061 1.6124 21 1 8.0552 0.4384 3.9980 22 1 7.4089 -1.7375 3.1452 23 1 -0.3633 -1.0276 0.0051 24 1 -0.3633 0.5183 0.8874 25 1 -0.3633 0.5094 -0.8926 26 1 3.1299 -0.6487 -1.2920 27 1 1.6081 -0.2759 -2.1374 28 1 1.9845 -2.7177 -2.0702 29 1 0.5566 -2.2801 -1.1022 30 1 3.3640 -2.7474 0.0020 31 1 2.0128 -3.9025 0.0992 32 1 2.1167 -2.2102 3.4461 33 1 3.5712 -2.4729 2.4543 34 1 2.5985 -4.5972 1.7854 35 1 2.7821 -4.5224 3.4364 36 1 5.7400 1.4318 4.6438 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:43 Heat of formation + Delta-G solvation = -122.256728 kcal Electronic energy + Delta-G solvation = -19879.114615 eV Core-core repulsion = 16909.061962 eV Total energy + Delta-G solvation = -2970.052653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15379 -37.76677 -36.17378 -35.73000 -35.19426 -33.25309 -32.12759 -28.40169 -28.28433 -26.24152 -23.99634 -22.48094 -21.20083 -20.02209 -19.06303 -18.01942 -17.08292 -16.93751 -16.65823 -16.09613 -15.68518 -15.53404 -15.02962 -14.74904 -14.60550 -14.25323 -14.00501 -13.66987 -13.45536 -13.08746 -13.04406 -12.90344 -12.63716 -12.50168 -12.37235 -12.20852 -12.16410 -11.83787 -11.55115 -11.28077 -11.26586 -10.98152 -10.78545 -9.70242 -9.57119 -8.75656 -7.47107 0.31408 1.29521 1.31144 1.44080 2.16483 2.55802 2.72030 3.62463 3.72293 3.89286 3.94323 4.06442 4.15264 4.29327 4.37908 4.45959 4.53483 4.61653 4.75735 4.81833 4.88066 5.02172 5.09795 5.16222 5.19797 5.22815 5.27239 5.29957 5.38619 5.56114 5.63846 5.88650 6.07728 6.22833 6.68787 6.75900 8.19038 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.009711 C = 0.008788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.912082 B = 2882.719100 C = 3185.294222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.073 0.927 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.128 4.128 7 C 0.166 3.834 8 H 0.078 0.922 9 C -0.003 4.003 10 N -0.832 5.832 11 N -1.000 6.000 12 S 2.715 3.285 13 O -1.048 7.048 14 O -1.034 7.034 15 C -1.029 5.029 16 H 0.115 0.885 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.985 3.015 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.250 1.250 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.346 0.654 35 H 0.349 0.651 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 -9.250 -10.905 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.091 0.909 4 C -0.163 4.163 5 C -0.146 4.146 6 C -0.167 4.167 7 C 0.060 3.940 8 H 0.096 0.904 9 C -0.135 4.135 10 N -0.364 5.364 11 N -0.839 5.839 12 S 2.819 3.181 13 O -1.038 7.038 14 O -1.024 7.024 15 C -1.163 5.163 16 H 0.134 0.866 17 C -0.141 4.141 18 N -0.526 5.526 19 Si 0.804 3.196 20 H -0.176 1.176 21 H -0.189 1.189 22 H -0.173 1.173 23 H 0.094 0.906 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.855 -8.323 -10.034 13.911 hybrid contribution 2.402 0.033 0.236 2.414 sum -2.453 -8.290 -9.798 13.067 Atomic orbital electron populations 1.22151 0.93815 1.03224 1.02312 1.21165 0.95615 0.95809 0.84920 0.90859 1.21907 1.00906 0.96953 0.96548 1.21481 1.01360 0.94274 0.97498 1.21981 1.00434 1.00328 0.94000 1.20822 0.99760 0.78323 0.95096 0.90416 1.22957 0.99182 0.91044 1.00350 1.58699 1.66430 1.02018 1.09267 1.57794 1.72560 1.17617 1.35966 1.00075 0.75567 0.71169 0.71328 1.93260 1.89405 1.36672 1.84509 1.93241 1.83911 1.79847 1.45400 1.30866 1.18046 1.40233 1.27109 0.86650 1.25955 1.06890 0.90414 0.90810 1.69989 1.39820 1.26141 1.16600 0.85231 0.74603 0.80063 0.79737 1.17570 1.18885 1.17329 0.90588 0.94638 0.88939 0.92806 0.88395 0.89627 0.90368 0.92668 0.88514 0.88883 0.94502 0.83946 0.83763 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 9.02 71.98 0.65 -3.72 16 2 C 0.13 4.51 3.24 44.97 0.15 4.66 16 3 H 0.07 2.92 6.77 -2.38 -0.02 2.90 16 4 C -0.12 -3.24 5.56 30.67 0.17 -3.07 16 5 C -0.11 -2.34 5.68 30.62 0.17 -2.17 16 6 C -0.13 -3.35 4.82 30.67 0.15 -3.20 16 7 C 0.17 5.78 2.78 44.97 0.13 5.91 16 8 H 0.08 2.58 7.49 -2.39 -0.02 2.56 16 9 C 0.00 -0.13 5.03 86.30 0.43 0.30 16 10 N -0.83 -24.37 9.59 -186.72 -1.79 -26.16 16 11 N -1.00 -41.33 3.00 -468.61 -1.40 -42.73 16 12 S 2.71 149.41 4.40 -56.49 -0.25 149.16 16 13 O -1.05 -64.51 16.38 -128.00 -2.10 -66.61 16 14 O -1.03 -61.90 14.40 -128.00 -1.84 -63.74 16 15 C -1.03 -56.57 7.91 67.73 0.54 -56.03 16 16 H 0.12 5.76 7.58 -2.91 -0.02 5.73 16 17 C 0.07 4.01 5.46 84.65 0.46 4.47 16 18 N -0.89 -53.76 13.19 21.45 0.28 -53.48 16 19 Si 0.99 41.27 29.54 68.60 2.03 43.30 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 23 H 0.08 1.86 5.73 -2.39 -0.01 1.84 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.50 6.51 -2.38 -0.02 1.48 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.99 6.87 -2.38 -0.02 1.97 16 32 H 0.09 4.45 5.35 -2.39 -0.01 4.44 16 33 H 0.04 1.59 5.80 -2.39 -0.01 1.57 16 34 H 0.35 8.11 7.11 -89.70 -0.64 7.47 16 35 H 0.35 9.45 9.08 -89.70 -0.81 8.64 16 36 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -75.11 286.75 -2.58 -77.68 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.35 Total: 35.42 kcal Atomic # 6 Polarization: -55.70 SS G_CDS: 2.84 Total: -52.85 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -2.91 Total: -122.37 kcal Atomic # 8 Polarization: -126.41 SS G_CDS: -3.94 Total: -130.35 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 149.41 SS G_CDS: -0.25 Total: 149.16 kcal Total: -75.11 -2.58 -77.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.572 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds