Wall clock time and date at job start Mon Mar 30 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.58198 * 2 1 4 4 C 1.53193 * 109.58426 * 120.27967 * 2 1 3 5 5 C 1.53044 * 109.30901 * 174.56908 * 4 2 1 6 6 C 1.53039 * 109.53484 * 298.62968 * 5 4 2 7 7 C 1.53194 * 109.31329 * 61.36762 * 6 5 4 8 8 H 1.09006 * 109.57970 * 65.29446 * 7 6 5 9 9 C 1.52994 * 109.58588 * 185.57518 * 7 6 5 10 10 N 1.46907 * 109.47188 * 294.26958 * 9 7 6 11 11 N 1.46920 * 109.70266 * 239.63782 * 2 1 3 12 12 S 1.65599 * 120.63299 * 6.53520 * 11 2 1 13 13 O 1.42103 * 106.40327 * 201.88425 * 12 11 2 14 14 O 1.42093 * 106.40052 * 334.80323 * 12 11 2 15 15 C 1.76199 * 107.21956 * 88.34660 * 12 11 2 16 16 H 1.07998 * 119.99746 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00275 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00264 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 119.99884 * 359.97438 * 17 15 12 20 20 H 1.48507 * 109.47218 * 90.00217 * 19 17 15 21 21 H 1.48506 * 109.47349 * 209.99965 * 19 17 15 22 22 H 1.48502 * 109.47093 * 330.00018 * 19 17 15 23 23 H 1.08995 * 109.46893 * 307.23444 * 1 2 3 24 24 H 1.09001 * 109.47058 * 67.23864 * 1 2 3 25 25 H 1.09004 * 109.46829 * 187.23481 * 1 2 3 26 26 H 1.09001 * 109.49937 * 54.61379 * 4 2 1 27 27 H 1.09001 * 109.52411 * 294.53214 * 4 2 1 28 28 H 1.09004 * 109.45459 * 178.61466 * 5 4 2 29 29 H 1.08992 * 109.46128 * 58.65391 * 5 4 2 30 30 H 1.08999 * 109.50135 * 301.41556 * 6 5 4 31 31 H 1.08997 * 109.49432 * 181.32004 * 6 5 4 32 32 H 1.08999 * 109.47251 * 54.27149 * 9 7 6 33 33 H 1.08999 * 109.47174 * 174.27020 * 9 7 6 34 34 H 1.00897 * 110.99635 * 184.91446 * 10 9 7 35 35 H 1.00898 * 111.00058 * 308.87092 * 10 9 7 36 36 H 0.96997 * 120.00097 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 1.2464 5 6 3.5679 -0.8432 1.1730 6 6 3.9604 -1.6608 -0.0597 7 6 3.4685 -0.9437 -1.3209 8 1 3.9939 0.0052 -1.4300 9 6 3.7340 -1.8208 -2.5461 10 7 5.1830 -1.9645 -2.7408 11 7 2.0254 -0.6992 -1.1935 12 16 0.9771 -1.2020 -2.3727 13 8 1.6385 -2.2414 -3.0809 14 8 -0.2847 -1.3722 -1.7418 15 6 0.7900 0.1325 -3.5079 16 1 1.3214 1.0585 -3.3450 17 6 -0.0357 -0.0050 -4.6035 18 7 -0.1757 0.9913 -5.4505 19 14 -0.9553 -1.6063 -4.8848 20 1 -2.2761 -1.5440 -4.2088 21 1 -1.1543 -1.8136 -6.3418 22 1 -0.1667 -2.7345 -4.3275 23 1 -0.3633 0.6218 0.8182 24 1 -0.3633 0.3976 -0.9476 25 1 -0.3633 -1.0195 0.1294 26 1 1.6049 -1.7246 1.2923 27 1 1.7638 -0.1658 2.1375 28 1 3.9381 -1.3389 2.0705 29 1 4.0045 0.1529 1.1022 30 1 3.5038 -2.6488 -0.0015 31 1 5.0449 -1.7624 -0.0985 32 1 3.2887 -2.8038 -2.3926 33 1 3.2932 -1.3560 -3.4280 34 1 5.3852 -2.4725 -3.5888 35 1 5.6388 -1.0644 -2.7410 36 1 -0.7569 0.8947 -6.2211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:47 Heat of formation + Delta-G solvation = -53.811258 kcal Electronic energy + Delta-G solvation = -19967.100846 eV Core-core repulsion = 17000.016211 eV Total energy + Delta-G solvation = -2967.084635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.68250 -36.56995 -34.57132 -34.01105 -33.05939 -32.25813 -30.97563 -26.68970 -26.42313 -24.80705 -22.67825 -20.66527 -20.11290 -18.70541 -17.45843 -16.22165 -15.90236 -15.38043 -14.83390 -14.41136 -14.23459 -14.05143 -13.71856 -13.47209 -13.18381 -12.78033 -12.69411 -12.26677 -11.95469 -11.72441 -11.51614 -11.32512 -11.09009 -10.86400 -10.69636 -10.56457 -10.37796 -10.20627 -10.11646 -9.40635 -9.23919 -9.19474 -8.96615 -8.21616 -8.06963 -6.83002 -5.36103 2.01220 3.04224 3.14457 3.23612 3.91968 4.10789 4.56273 4.90917 5.05911 5.12505 5.19833 5.37786 5.44604 5.56883 5.68291 5.79070 5.89510 5.95037 5.98564 6.07931 6.21659 6.24482 6.31021 6.38234 6.51307 6.63003 6.73675 6.81710 6.92988 7.21821 7.40457 7.46799 7.60595 7.83202 8.19652 8.68176 10.29430 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.010375 C = 0.008487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.431897 B = 2698.230453 C = 3298.324059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.159 3.841 3 H 0.064 0.936 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.118 4.118 7 C 0.161 3.839 8 H 0.062 0.938 9 C 0.037 3.963 10 N -0.852 5.852 11 N -0.994 5.994 12 S 2.672 3.328 13 O -1.006 7.006 14 O -1.005 7.005 15 C -1.017 5.017 16 H 0.118 0.882 17 C 0.153 3.847 18 N -0.824 5.824 19 Si 0.801 3.199 20 H -0.247 1.247 21 H -0.257 1.257 22 H -0.218 1.218 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.342 0.658 35 H 0.329 0.671 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -2.221 8.970 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.053 3.947 3 H 0.082 0.918 4 C -0.168 4.168 5 C -0.156 4.156 6 C -0.157 4.157 7 C 0.054 3.946 8 H 0.080 0.920 9 C -0.094 4.094 10 N -0.383 5.383 11 N -0.831 5.831 12 S 2.777 3.223 13 O -0.996 6.996 14 O -0.995 6.995 15 C -1.151 5.151 16 H 0.136 0.864 17 C -0.066 4.066 18 N -0.453 5.453 19 Si 0.621 3.379 20 H -0.170 1.170 21 H -0.181 1.181 22 H -0.140 1.140 23 H 0.067 0.933 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.955 -3.399 9.465 11.688 hybrid contribution -0.470 0.866 -1.450 1.753 sum 5.485 -2.533 8.015 10.037 Atomic orbital electron populations 1.22716 0.92468 1.04739 1.03224 1.20863 0.94901 0.94908 0.84068 0.91767 1.21984 0.95911 1.01317 0.97560 1.21520 0.95887 1.00258 0.97950 1.21834 1.01238 0.98933 0.93671 1.20871 0.80594 0.97589 0.95545 0.92026 1.23015 0.87206 1.02740 0.96406 1.58929 1.11068 1.24005 1.44297 1.57667 1.16614 1.74655 1.34158 1.01528 0.72006 0.75728 0.72998 1.93524 1.74036 1.58861 1.73165 1.93505 1.42380 1.87978 1.75626 1.30575 1.39974 1.20293 1.24264 0.86373 1.24436 0.92546 0.96461 0.93186 1.69994 1.32813 1.31072 1.11453 0.87874 0.83904 0.84708 0.81437 1.17039 1.18099 1.14018 0.93289 0.89691 0.89185 0.91615 0.91472 0.92338 0.92217 0.91913 0.90489 0.87334 0.91910 0.84635 0.86001 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 7.51 37.16 0.28 -2.94 16 2 C 0.16 2.74 3.51 -67.60 -0.24 2.50 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -1.82 5.37 -26.61 -0.14 -1.96 16 5 C -0.12 -1.53 5.88 -26.69 -0.16 -1.69 16 6 C -0.12 -1.73 5.20 -26.61 -0.14 -1.87 16 7 C 0.16 2.80 3.08 -67.60 -0.21 2.59 16 8 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 9 C 0.04 0.69 4.46 -3.82 -0.02 0.67 16 10 N -0.85 -12.56 9.26 -10.37 -0.10 -12.65 16 11 N -0.99 -19.63 3.29 -99.50 -0.33 -19.96 16 12 S 2.67 65.10 3.30 -107.50 -0.35 64.74 16 13 O -1.01 -25.38 10.34 -57.17 -0.59 -25.97 16 14 O -1.00 -25.51 11.42 -57.17 -0.65 -26.16 16 15 C -1.02 -28.00 10.12 30.60 0.31 -27.69 16 16 H 0.12 3.35 8.06 -52.49 -0.42 2.93 16 17 C 0.15 4.34 5.47 -17.82 -0.10 4.25 16 18 N -0.82 -23.67 13.96 55.43 0.77 -22.89 16 19 Si 0.80 20.33 26.54 -169.99 -4.51 15.82 16 20 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.22 -5.58 5.61 56.52 0.32 -5.26 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 1.83 6.17 -51.93 -0.32 1.51 16 25 H 0.09 1.77 6.51 -51.93 -0.34 1.43 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.04 7.94 -51.93 -0.41 0.62 16 32 H 0.11 2.23 6.46 -51.93 -0.34 1.90 16 33 H 0.06 1.35 6.34 -51.93 -0.33 1.02 16 34 H 0.34 4.63 9.08 -39.29 -0.36 4.27 16 35 H 0.33 4.25 8.91 -39.29 -0.35 3.90 16 36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -30.15 281.40 -7.39 -37.54 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.47 Total: 11.43 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -0.41 Total: -26.14 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.35 Total: -55.51 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -1.24 Total: -52.13 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.51 Total: 15.82 kcal Atomic # 16 Polarization: 65.10 SS G_CDS: -0.35 Total: 64.74 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.15 -7.39 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.269 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds