Wall clock time and date at job start Mon Mar 30 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.58198 * 2 1 4 4 C 1.53193 * 109.58426 * 120.27967 * 2 1 3 5 5 C 1.53044 * 109.30901 * 174.56908 * 4 2 1 6 6 C 1.53039 * 109.53484 * 298.62968 * 5 4 2 7 7 C 1.53194 * 109.31329 * 61.36762 * 6 5 4 8 8 H 1.09006 * 109.57970 * 65.29446 * 7 6 5 9 9 C 1.52994 * 109.58588 * 185.57518 * 7 6 5 10 10 N 1.46907 * 109.47188 * 294.26958 * 9 7 6 11 11 N 1.46920 * 109.70266 * 239.63782 * 2 1 3 12 12 S 1.65599 * 120.63299 * 6.53520 * 11 2 1 13 13 O 1.42103 * 106.40327 * 201.88425 * 12 11 2 14 14 O 1.42093 * 106.40052 * 334.80323 * 12 11 2 15 15 C 1.76199 * 107.21956 * 88.34660 * 12 11 2 16 16 H 1.07998 * 119.99746 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00275 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00264 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 119.99884 * 359.97438 * 17 15 12 20 20 H 1.48507 * 109.47218 * 90.00217 * 19 17 15 21 21 H 1.48506 * 109.47349 * 209.99965 * 19 17 15 22 22 H 1.48502 * 109.47093 * 330.00018 * 19 17 15 23 23 H 1.08995 * 109.46893 * 307.23444 * 1 2 3 24 24 H 1.09001 * 109.47058 * 67.23864 * 1 2 3 25 25 H 1.09004 * 109.46829 * 187.23481 * 1 2 3 26 26 H 1.09001 * 109.49937 * 54.61379 * 4 2 1 27 27 H 1.09001 * 109.52411 * 294.53214 * 4 2 1 28 28 H 1.09004 * 109.45459 * 178.61466 * 5 4 2 29 29 H 1.08992 * 109.46128 * 58.65391 * 5 4 2 30 30 H 1.08999 * 109.50135 * 301.41556 * 6 5 4 31 31 H 1.08997 * 109.49432 * 181.32004 * 6 5 4 32 32 H 1.08999 * 109.47251 * 54.27149 * 9 7 6 33 33 H 1.08999 * 109.47174 * 174.27020 * 9 7 6 34 34 H 1.00897 * 110.99635 * 184.91446 * 10 9 7 35 35 H 1.00898 * 111.00058 * 308.87092 * 10 9 7 36 36 H 0.96997 * 120.00097 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 1.2464 5 6 3.5679 -0.8432 1.1730 6 6 3.9604 -1.6608 -0.0597 7 6 3.4685 -0.9437 -1.3209 8 1 3.9939 0.0052 -1.4300 9 6 3.7340 -1.8208 -2.5461 10 7 5.1830 -1.9645 -2.7408 11 7 2.0254 -0.6992 -1.1935 12 16 0.9771 -1.2020 -2.3727 13 8 1.6385 -2.2414 -3.0809 14 8 -0.2847 -1.3722 -1.7418 15 6 0.7900 0.1325 -3.5079 16 1 1.3214 1.0585 -3.3450 17 6 -0.0357 -0.0050 -4.6035 18 7 -0.1757 0.9913 -5.4505 19 14 -0.9553 -1.6063 -4.8848 20 1 -2.2761 -1.5440 -4.2088 21 1 -1.1543 -1.8136 -6.3418 22 1 -0.1667 -2.7345 -4.3275 23 1 -0.3633 0.6218 0.8182 24 1 -0.3633 0.3976 -0.9476 25 1 -0.3633 -1.0195 0.1294 26 1 1.6049 -1.7246 1.2923 27 1 1.7638 -0.1658 2.1375 28 1 3.9381 -1.3389 2.0705 29 1 4.0045 0.1529 1.1022 30 1 3.5038 -2.6488 -0.0015 31 1 5.0449 -1.7624 -0.0985 32 1 3.2887 -2.8038 -2.3926 33 1 3.2932 -1.3560 -3.4280 34 1 5.3852 -2.4725 -3.5888 35 1 5.6388 -1.0644 -2.7410 36 1 -0.7569 0.8947 -6.2211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:47 Heat of formation + Delta-G solvation = -77.953317 kcal Electronic energy + Delta-G solvation = -19968.147724 eV Core-core repulsion = 17000.016211 eV Total energy + Delta-G solvation = -2968.131513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02411 -38.40073 -36.51775 -35.47472 -35.20592 -33.53048 -32.33509 -28.57336 -28.06683 -26.10986 -24.06303 -22.06659 -21.37370 -20.68747 -19.34890 -17.97563 -17.46508 -17.12340 -16.36598 -15.89547 -15.85194 -15.52414 -15.25301 -15.06318 -14.82875 -14.50774 -14.13144 -13.83941 -13.54774 -13.41394 -13.13032 -12.99693 -12.83641 -12.53887 -12.28690 -11.92940 -11.86619 -11.59152 -11.41795 -11.36939 -11.10116 -10.97775 -10.78416 -9.72273 -9.44144 -8.98963 -7.52725 0.15470 1.01290 1.10300 1.17987 1.85511 2.39851 2.44335 3.37616 3.50780 3.84788 3.93515 4.01441 4.07162 4.27300 4.33979 4.40633 4.47874 4.64570 4.71326 4.86838 4.97629 4.98498 5.10172 5.19740 5.28180 5.32760 5.34245 5.34657 5.48651 5.58049 5.70626 5.98327 5.99692 6.24180 6.52219 6.68182 8.19033 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.010375 C = 0.008487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.431897 B = 2698.230453 C = 3298.324059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.112 4.112 7 C 0.154 3.846 8 H 0.076 0.924 9 C 0.042 3.958 10 N -0.838 5.838 11 N -0.992 5.992 12 S 2.689 3.311 13 O -1.019 7.019 14 O -1.018 7.018 15 C -1.037 5.037 16 H 0.095 0.905 17 C 0.108 3.892 18 N -0.858 5.858 19 Si 0.826 3.174 20 H -0.241 1.241 21 H -0.225 1.225 22 H -0.225 1.225 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.025 0.975 34 H 0.349 0.651 35 H 0.343 0.657 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 -2.578 11.018 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.043 3.957 3 H 0.098 0.902 4 C -0.163 4.163 5 C -0.152 4.152 6 C -0.151 4.151 7 C 0.048 3.952 8 H 0.094 0.906 9 C -0.089 4.089 10 N -0.370 5.370 11 N -0.832 5.832 12 S 2.793 3.207 13 O -1.008 7.008 14 O -1.008 7.008 15 C -1.169 5.169 16 H 0.113 0.887 17 C -0.108 4.108 18 N -0.488 5.488 19 Si 0.643 3.357 20 H -0.164 1.164 21 H -0.147 1.147 22 H -0.147 1.147 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.043 0.957 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.200 -3.733 11.476 14.052 hybrid contribution -0.776 1.040 -2.032 2.411 sum 6.424 -2.693 9.444 11.735 Atomic orbital electron populations 1.22633 0.93815 1.04287 1.02554 1.21206 0.94013 0.96091 0.84396 0.90215 1.21986 0.96838 1.00837 0.96671 1.21535 0.94813 1.00953 0.97867 1.21816 1.02067 0.98258 0.92984 1.21135 0.79161 0.98414 0.96518 0.90568 1.22698 0.89122 1.01375 0.95743 1.58849 1.08440 1.24899 1.44809 1.57448 1.17247 1.74885 1.33668 1.00950 0.72218 0.74672 0.72902 1.93529 1.74220 1.58809 1.74276 1.93503 1.43845 1.87947 1.75554 1.31149 1.39343 1.20984 1.25406 0.88656 1.25171 0.93387 0.98861 0.93350 1.70027 1.34009 1.32474 1.12331 0.87471 0.83066 0.81683 0.83458 1.16400 1.14699 1.14697 0.89636 0.93528 0.90624 0.92471 0.88267 0.89590 0.90835 0.93079 0.88671 0.89502 0.95681 0.83785 0.84455 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.34 7.51 71.98 0.54 -5.79 16 2 C 0.15 4.82 3.51 44.98 0.16 4.98 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.12 -3.05 5.37 30.67 0.16 -2.89 16 5 C -0.11 -2.43 5.88 30.62 0.18 -2.25 16 6 C -0.11 -2.96 5.20 30.67 0.16 -2.80 16 7 C 0.15 5.12 3.08 44.97 0.14 5.26 16 8 H 0.08 2.32 8.12 -2.38 -0.02 2.30 16 9 C 0.04 1.57 4.46 86.30 0.39 1.96 16 10 N -0.84 -23.45 9.26 -186.72 -1.73 -25.18 16 11 N -0.99 -38.64 3.29 -468.70 -1.54 -40.18 16 12 S 2.69 133.46 3.30 -56.49 -0.19 133.28 16 13 O -1.02 -52.49 10.34 -128.00 -1.32 -53.81 16 14 O -1.02 -52.57 11.42 -128.00 -1.46 -54.03 16 15 C -1.04 -59.18 10.12 67.73 0.69 -58.49 16 16 H 0.10 5.68 8.06 -2.91 -0.02 5.65 16 17 C 0.11 6.30 5.47 84.65 0.46 6.77 16 18 N -0.86 -50.47 13.96 21.45 0.30 -50.17 16 19 Si 0.83 41.62 26.54 68.60 1.82 43.44 16 20 H -0.24 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.22 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.22 -11.51 5.61 99.48 0.56 -10.95 16 23 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.05 2.04 6.17 -2.39 -0.01 2.02 16 25 H 0.07 2.94 6.51 -2.38 -0.02 2.93 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.09 2.19 7.94 -2.39 -0.02 2.17 16 32 H 0.09 3.60 6.46 -2.39 -0.02 3.59 16 33 H 0.03 1.11 6.34 -2.39 -0.02 1.10 16 34 H 0.35 9.05 9.08 -89.70 -0.81 8.23 16 35 H 0.34 8.16 8.91 -89.70 -0.80 7.37 16 36 H 0.29 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.12 281.40 -1.92 -69.04 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.67 Total: 30.89 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 2.87 Total: -53.27 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -2.97 Total: -115.53 kcal Atomic # 8 Polarization: -105.06 SS G_CDS: -2.79 Total: -107.85 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.82 Total: 43.44 kcal Atomic # 16 Polarization: 133.46 SS G_CDS: -0.19 Total: 133.28 kcal Total: -67.12 -1.92 -69.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.916 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds