Wall clock time and date at job start Mon Mar 30 2020 05:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46535 * 2 1 4 4 N 1.46891 * 109.47126 * 120.00156 * 2 1 3 5 5 C 1.53002 * 109.47154 * 240.00319 * 2 1 3 6 6 H 1.09006 * 109.49516 * 60.06534 * 5 2 1 7 7 C 1.53038 * 109.49952 * 300.00033 * 5 2 1 8 8 C 1.53035 * 109.54223 * 178.68534 * 7 5 2 9 9 C 1.53195 * 109.31211 * 61.36015 * 8 7 5 10 10 N 1.46927 * 108.77542 * 305.36789 * 9 8 7 11 11 S 1.65600 * 120.63069 * 233.58223 * 10 9 8 12 12 O 1.42103 * 106.39991 * 336.46429 * 11 10 9 13 13 O 1.42095 * 106.40377 * 203.54214 * 11 10 9 14 14 C 1.76199 * 107.21522 * 90.00034 * 11 10 9 15 15 H 1.08002 * 120.00405 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99836 * 179.72073 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28505 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27572 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46925 * 118.73952 * 53.86034 * 10 9 8 23 23 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 24 24 H 1.08989 * 109.47291 * 299.99828 * 1 2 3 25 25 H 1.09001 * 109.47225 * 60.00270 * 1 2 3 26 26 H 1.00903 * 111.00173 * 296.05012 * 4 2 1 27 27 H 1.00903 * 110.99982 * 59.99967 * 4 2 1 28 28 H 1.08997 * 109.46172 * 58.65712 * 7 5 2 29 29 H 1.09000 * 109.45884 * 298.70702 * 7 5 2 30 30 H 1.09004 * 109.49440 * 301.41104 * 8 7 5 31 31 H 1.08991 * 109.52868 * 181.33140 * 8 7 5 32 32 H 1.09001 * 109.58354 * 185.58107 * 9 8 7 33 33 H 1.09001 * 109.58472 * 65.15641 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.58577 * 65.92685 * 22 10 9 36 36 H 1.08998 * 109.58834 * 186.34796 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0400 -0.7212 -1.2493 6 1 1.6779 -0.2069 -2.1396 7 6 1.5303 -2.1642 -1.2500 8 6 2.0127 -2.8768 -2.5155 9 6 3.5443 -2.9051 -2.5284 10 7 4.0439 -1.5311 -2.3819 11 16 5.1189 -0.9033 -3.4739 12 8 5.7800 -2.0117 -4.0688 13 8 5.8069 0.1435 -2.8033 14 6 4.1774 -0.1405 -4.7531 15 1 3.0983 -0.1521 -4.7097 16 6 4.8184 0.4767 -5.8064 17 7 6.1324 0.4911 -5.8590 18 14 3.8204 1.2921 -7.1585 19 1 2.3725 1.1379 -6.8667 20 1 4.1609 2.7362 -7.2228 21 1 4.1343 0.6511 -8.4608 22 6 3.5762 -0.7269 -1.2448 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.7502 -0.1990 2.0372 27 1 1.6961 -1.6480 1.2226 28 1 0.4406 -2.1644 -1.2261 29 1 1.9125 -2.6848 -0.3720 30 1 1.6512 -2.3425 -3.3941 31 1 1.6299 -3.8973 -2.5273 32 1 3.8941 -3.3224 -3.4727 33 1 3.9055 -3.5154 -1.7007 34 1 6.5833 0.9251 -6.6002 35 1 3.9400 -1.1632 -0.3145 36 1 3.9472 0.2935 -1.3417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:49 Heat of formation + Delta-G solvation = -105.363051 kcal Electronic energy + Delta-G solvation = -19221.340781 eV Core-core repulsion = 16252.020693 eV Total energy + Delta-G solvation = -2969.320089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.82329 -35.50245 -35.15041 -33.87284 -33.04149 -31.44805 -30.08979 -28.48865 -26.07066 -24.35272 -23.09343 -21.14432 -19.20377 -18.39757 -17.32169 -16.26214 -16.08904 -15.09868 -14.98337 -14.50207 -14.30235 -13.98801 -13.43928 -13.30541 -13.10324 -12.88050 -12.62287 -12.51241 -11.97678 -11.58012 -11.35056 -11.21156 -11.16242 -10.76081 -10.64712 -10.56078 -10.48636 -10.21197 -10.17084 -9.89479 -9.72924 -9.21733 -8.84762 -8.66901 -7.99853 -6.64707 -5.25973 2.36836 3.07080 3.15341 3.22395 4.09100 4.60209 4.62076 4.68466 4.86816 5.00128 5.15095 5.28189 5.38704 5.42281 5.67560 5.81074 5.82446 5.90496 5.91427 5.94711 6.03543 6.11557 6.21130 6.30006 6.36153 6.45756 6.49725 6.62467 6.78591 7.00587 7.18951 7.37826 7.46001 7.73105 8.03957 8.94148 10.28637 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.007443 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.266429 B = 3761.169949 C = 4114.968765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.083 0.917 4 N -0.841 5.841 5 C -0.097 4.097 6 H 0.079 0.921 7 C -0.110 4.110 8 C -0.135 4.135 9 C 0.128 3.872 10 N -1.013 6.013 11 S 2.716 3.284 12 O -1.007 7.007 13 O -1.005 7.005 14 C -1.018 5.018 15 H 0.101 0.899 16 C 0.132 3.868 17 N -0.847 5.847 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.139 3.861 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.336 0.664 27 H 0.338 0.662 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.289 0.711 35 H 0.072 0.928 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 -3.120 9.478 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 H 0.101 0.899 4 N -0.370 5.370 5 C -0.117 4.117 6 H 0.097 0.903 7 C -0.148 4.148 8 C -0.174 4.174 9 C 0.001 3.999 10 N -0.848 5.848 11 S 2.817 3.183 12 O -0.997 6.997 13 O -0.995 6.995 14 C -1.152 5.152 15 H 0.119 0.881 16 C -0.085 4.085 17 N -0.477 5.477 18 Si 0.742 3.258 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.196 1.196 22 C 0.013 3.987 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.110 -3.011 9.197 13.995 hybrid contribution -2.212 0.558 -0.817 2.423 sum -12.322 -2.453 8.380 15.102 Atomic orbital electron populations 1.22670 0.98077 1.01933 1.01939 1.21440 0.91680 0.98511 0.90562 0.89873 1.58904 1.67509 1.06446 1.04168 1.21675 0.97259 0.95902 0.96886 0.90289 1.21544 0.99346 0.95703 0.98219 1.21916 0.96803 1.00099 0.98544 1.21159 0.93085 0.83463 1.02175 1.58170 1.64672 1.20948 1.41011 1.00457 0.72516 0.72732 0.72621 1.93343 1.73556 1.55451 1.77394 1.93348 1.72448 1.57528 1.76202 1.30694 1.06843 1.52188 1.25446 0.88057 1.24751 0.94650 0.91711 0.97382 1.69913 1.08096 1.37709 1.31959 0.86178 0.80583 0.79065 0.79987 1.18677 1.19646 1.19639 1.21241 0.92078 0.96100 0.89248 0.92428 0.93157 0.92015 0.85185 0.84863 0.92531 0.91900 0.91319 0.91730 0.89414 0.92673 0.90020 0.91014 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.13 37.16 0.34 -1.44 16 2 C 0.09 1.04 3.18 -67.71 -0.22 0.83 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 N -0.84 -8.69 8.32 -4.67 -0.04 -8.72 16 5 C -0.10 -1.39 2.24 -90.28 -0.20 -1.59 16 6 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.11 -1.38 4.48 -26.69 -0.12 -1.50 16 8 C -0.13 -1.91 6.08 -26.61 -0.16 -2.07 16 9 C 0.13 2.25 6.37 -3.71 -0.02 2.22 16 10 N -1.01 -21.17 3.28 -113.27 -0.37 -21.54 16 11 S 2.72 74.02 4.97 -107.50 -0.53 73.48 16 12 O -1.01 -30.02 16.73 -57.17 -0.96 -30.98 16 13 O -1.00 -30.05 16.72 -57.17 -0.96 -31.01 16 14 C -1.02 -28.43 9.75 30.60 0.30 -28.13 16 15 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 16 C 0.13 3.75 5.46 -17.82 -0.10 3.66 16 17 N -0.85 -25.34 13.19 55.43 0.73 -24.60 16 18 Si 0.92 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C 0.14 2.53 5.59 -3.49 -0.02 2.51 16 23 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 24 H 0.05 0.42 8.14 -51.94 -0.42 0.00 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.34 2.83 9.07 -39.29 -0.36 2.47 16 27 H 0.34 3.15 7.20 -39.29 -0.28 2.87 16 28 H 0.06 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.06 0.73 6.74 -51.93 -0.35 0.38 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.66 7.13 -51.93 -0.37 1.29 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.07 1.23 7.47 -51.93 -0.39 0.85 16 36 H 0.08 1.68 7.12 -51.93 -0.37 1.31 16 LS Contribution 296.95 15.07 4.48 4.48 Total: -1.00 -34.62 296.95 -8.16 -42.77 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.28 Total: 5.84 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -0.20 Total: -25.52 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.32 Total: -54.87 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -1.91 Total: -61.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 74.02 SS G_CDS: -0.53 Total: 73.48 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.62 -8.16 -42.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.588 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds