Wall clock time and date at job start Mon Mar 30 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46535 * 2 1 4 4 N 1.46891 * 109.47126 * 120.00156 * 2 1 3 5 5 C 1.53002 * 109.47154 * 240.00319 * 2 1 3 6 6 H 1.09006 * 109.49516 * 60.06534 * 5 2 1 7 7 C 1.53038 * 109.49952 * 300.00033 * 5 2 1 8 8 C 1.53035 * 109.54223 * 178.68534 * 7 5 2 9 9 C 1.53195 * 109.31211 * 61.36015 * 8 7 5 10 10 N 1.46927 * 108.77542 * 305.36789 * 9 8 7 11 11 S 1.65600 * 120.63069 * 233.58223 * 10 9 8 12 12 O 1.42103 * 106.39991 * 336.46429 * 11 10 9 13 13 O 1.42095 * 106.40377 * 203.54214 * 11 10 9 14 14 C 1.76199 * 107.21522 * 90.00034 * 11 10 9 15 15 H 1.08002 * 120.00405 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99836 * 179.72073 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28505 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27572 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46925 * 118.73952 * 53.86034 * 10 9 8 23 23 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 24 24 H 1.08989 * 109.47291 * 299.99828 * 1 2 3 25 25 H 1.09001 * 109.47225 * 60.00270 * 1 2 3 26 26 H 1.00903 * 111.00173 * 296.05012 * 4 2 1 27 27 H 1.00903 * 110.99982 * 59.99967 * 4 2 1 28 28 H 1.08997 * 109.46172 * 58.65712 * 7 5 2 29 29 H 1.09000 * 109.45884 * 298.70702 * 7 5 2 30 30 H 1.09004 * 109.49440 * 301.41104 * 8 7 5 31 31 H 1.08991 * 109.52868 * 181.33140 * 8 7 5 32 32 H 1.09001 * 109.58354 * 185.58107 * 9 8 7 33 33 H 1.09001 * 109.58472 * 65.15641 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.58577 * 65.92685 * 22 10 9 36 36 H 1.08998 * 109.58834 * 186.34796 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0400 -0.7212 -1.2493 6 1 1.6779 -0.2069 -2.1396 7 6 1.5303 -2.1642 -1.2500 8 6 2.0127 -2.8768 -2.5155 9 6 3.5443 -2.9051 -2.5284 10 7 4.0439 -1.5311 -2.3819 11 16 5.1189 -0.9033 -3.4739 12 8 5.7800 -2.0117 -4.0688 13 8 5.8069 0.1435 -2.8033 14 6 4.1774 -0.1405 -4.7531 15 1 3.0983 -0.1521 -4.7097 16 6 4.8184 0.4767 -5.8064 17 7 6.1324 0.4911 -5.8590 18 14 3.8204 1.2921 -7.1585 19 1 2.3725 1.1379 -6.8667 20 1 4.1609 2.7362 -7.2228 21 1 4.1343 0.6511 -8.4608 22 6 3.5762 -0.7269 -1.2448 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.7502 -0.1990 2.0372 27 1 1.6961 -1.6480 1.2226 28 1 0.4406 -2.1644 -1.2261 29 1 1.9125 -2.6848 -0.3720 30 1 1.6512 -2.3425 -3.3941 31 1 1.6299 -3.8973 -2.5273 32 1 3.8941 -3.3224 -3.4727 33 1 3.9055 -3.5154 -1.7007 34 1 6.5833 0.9251 -6.6002 35 1 3.9400 -1.1632 -0.3145 36 1 3.9472 0.2935 -1.3417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:48 Heat of formation + Delta-G solvation = -133.885657 kcal Electronic energy + Delta-G solvation = -19222.577615 eV Core-core repulsion = 16252.020693 eV Total energy + Delta-G solvation = -2970.556922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01007 -37.47476 -36.60212 -36.13535 -35.18577 -32.77511 -31.27041 -29.34038 -28.26663 -25.60651 -24.36829 -22.39625 -20.77219 -19.97341 -19.15293 -18.30115 -17.10816 -17.01158 -16.65362 -16.03584 -15.63518 -15.35404 -15.11465 -14.56444 -14.37536 -14.09097 -13.98755 -13.68095 -13.56324 -13.34000 -13.04627 -12.75909 -12.59130 -12.49505 -12.33597 -12.30249 -12.10809 -11.90092 -11.66001 -11.28062 -11.25919 -11.05360 -10.86657 -9.77475 -9.35419 -8.74593 -7.48804 0.33380 1.30912 1.31278 1.49366 2.19188 2.56358 2.86233 3.74277 3.80025 3.84579 3.85781 4.10095 4.22736 4.30384 4.35122 4.48647 4.57013 4.62731 4.70285 4.73335 4.94705 5.00166 5.03118 5.12172 5.13848 5.18810 5.26008 5.30535 5.42366 5.56192 5.60326 5.91104 6.06296 6.41046 6.77060 6.78551 8.20490 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.007443 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.266429 B = 3761.169949 C = 4114.968765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 H 0.069 0.931 4 N -0.849 5.849 5 C -0.094 4.094 6 H 0.063 0.937 7 C -0.104 4.104 8 C -0.130 4.130 9 C 0.115 3.885 10 N -1.009 6.009 11 S 2.715 3.285 12 O -1.044 7.044 13 O -1.044 7.044 14 C -1.036 5.036 15 H 0.117 0.883 16 C 0.068 3.932 17 N -0.897 5.897 18 Si 0.990 3.010 19 H -0.246 1.246 20 H -0.259 1.259 21 H -0.258 1.258 22 C 0.135 3.865 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.349 0.651 27 H 0.347 0.653 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.299 0.701 35 H 0.083 0.917 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 -3.532 10.040 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.017 4.017 3 H 0.088 0.912 4 N -0.381 5.381 5 C -0.114 4.114 6 H 0.081 0.919 7 C -0.141 4.141 8 C -0.169 4.169 9 C -0.010 4.010 10 N -0.848 5.848 11 S 2.817 3.183 12 O -1.034 7.034 13 O -1.035 7.035 14 C -1.169 5.169 15 H 0.135 0.865 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.808 3.192 19 H -0.169 1.169 20 H -0.183 1.183 21 H -0.182 1.182 22 C 0.010 3.990 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.200 -3.438 9.787 16.788 hybrid contribution -1.211 0.631 -0.888 1.629 sum -14.410 -2.807 8.899 17.168 Atomic orbital electron populations 1.22579 0.95904 1.02875 1.02435 1.21279 0.93225 0.97438 0.89735 0.91228 1.58826 1.67899 1.07098 1.04242 1.21634 0.93983 0.97921 0.97887 0.91873 1.21543 1.01011 0.93777 0.97800 1.21917 0.93661 1.02295 0.99023 1.21499 0.95923 0.81494 1.02054 1.57684 1.64021 1.22558 1.40505 1.00060 0.73179 0.71985 0.73034 1.93280 1.75296 1.56274 1.78589 1.93283 1.74315 1.58965 1.76904 1.30994 1.07683 1.52337 1.25926 0.86510 1.26060 0.95841 0.92137 1.00387 1.70009 1.10256 1.39091 1.33504 0.85113 0.79362 0.78339 0.76413 1.16921 1.18293 1.18189 1.21441 0.95125 0.94189 0.88264 0.91195 0.91689 0.92554 0.83750 0.83878 0.89674 0.90313 0.92691 0.88306 0.91505 0.90432 0.89135 0.89929 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.13 71.98 0.66 -2.16 16 2 C 0.10 2.01 3.18 44.92 0.14 2.16 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 N -0.85 -15.31 8.32 -168.69 -1.40 -16.71 16 5 C -0.09 -2.55 2.24 -10.57 -0.02 -2.57 16 6 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 7 C -0.10 -2.23 4.48 30.62 0.14 -2.10 16 8 C -0.13 -3.36 6.08 30.67 0.19 -3.17 16 9 C 0.12 3.98 6.37 86.36 0.55 4.53 16 10 N -1.01 -42.81 3.28 -512.28 -1.68 -44.49 16 11 S 2.71 153.87 4.97 -56.49 -0.28 153.59 16 12 O -1.04 -65.00 16.73 -128.00 -2.14 -67.14 16 13 O -1.04 -65.60 16.72 -128.00 -2.14 -67.74 16 14 C -1.04 -58.99 9.75 67.74 0.66 -58.33 16 15 H 0.12 6.04 7.81 -2.91 -0.02 6.02 16 16 C 0.07 3.89 5.46 84.66 0.46 4.36 16 17 N -0.90 -55.18 13.19 21.45 0.28 -54.89 16 18 Si 0.99 42.19 29.54 68.60 2.03 44.22 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 C 0.13 4.91 5.59 86.51 0.48 5.39 16 23 H 0.07 0.94 6.40 -2.39 -0.02 0.93 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.35 4.92 9.07 -89.69 -0.81 4.11 16 27 H 0.35 5.22 7.20 -89.69 -0.65 4.57 16 28 H 0.08 1.43 6.36 -2.39 -0.02 1.41 16 29 H 0.08 1.49 6.74 -2.39 -0.02 1.47 16 30 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.57 7.13 -2.39 -0.02 2.55 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.30 16.40 8.31 -92.70 -0.77 15.63 16 35 H 0.08 2.80 7.47 -2.39 -0.02 2.78 16 36 H 0.06 2.33 7.12 -2.39 -0.02 2.32 16 Total: -1.00 -78.14 296.95 -2.45 -80.58 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.37 Total: 24.49 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 3.26 Total: -51.89 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -2.80 Total: -116.10 kcal Atomic # 8 Polarization: -130.60 SS G_CDS: -4.28 Total: -134.89 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 153.87 SS G_CDS: -0.28 Total: 153.59 kcal Total: -78.14 -2.45 -80.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.301 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds