Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47051 * 2 1 4 4 N 1.46896 * 109.47254 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 119.99443 * 2 1 3 6 6 H 1.09002 * 109.49918 * 305.00302 * 5 2 1 7 7 C 1.53036 * 109.49372 * 65.06783 * 5 2 1 8 8 C 1.53046 * 109.53927 * 181.34583 * 7 5 2 9 9 C 1.53189 * 109.31336 * 298.63505 * 8 7 5 10 10 N 1.46935 * 108.77418 * 54.63373 * 9 8 7 11 11 S 1.65603 * 120.62952 * 126.41298 * 10 9 8 12 12 O 1.42098 * 106.39705 * 203.54048 * 11 10 9 13 13 O 1.42099 * 106.40125 * 336.45832 * 11 10 9 14 14 C 1.76197 * 107.21703 * 90.00051 * 11 10 9 15 15 H 1.08007 * 120.00022 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99791 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00213 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99893 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47454 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47350 * 120.00074 * 18 16 14 21 21 H 1.48499 * 109.47327 * 239.99884 * 18 16 14 22 22 C 1.46996 * 118.75211 * 306.39315 * 10 9 8 23 23 H 1.09007 * 109.47385 * 300.00112 * 1 2 3 24 24 H 1.08996 * 109.47558 * 60.00118 * 1 2 3 25 25 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.00903 * 111.00040 * 299.99978 * 4 2 1 27 27 H 1.00898 * 110.99967 * 63.95334 * 4 2 1 28 28 H 1.08997 * 109.46472 * 301.36555 * 7 5 2 29 29 H 1.09003 * 109.46560 * 61.34241 * 7 5 2 30 30 H 1.09001 * 109.49287 * 58.58732 * 8 7 5 31 31 H 1.09004 * 109.49898 * 178.64868 * 8 7 5 32 32 H 1.09001 * 109.58579 * 174.41761 * 9 8 7 33 33 H 1.08995 * 109.58826 * 294.84578 * 9 8 7 34 34 H 0.96998 * 119.99745 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.57815 * 293.82544 * 22 10 9 36 36 H 1.09007 * 109.62790 * 173.38404 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7211 1.2493 6 1 1.6057 -0.2619 2.1373 7 6 1.6369 -2.1961 1.1879 8 6 2.1175 -2.9112 2.4528 9 6 3.6453 -2.8304 2.5311 10 7 4.0493 -1.4203 2.4445 11 16 5.0300 -0.7513 3.5990 12 8 4.7903 0.6490 3.5665 13 8 4.8682 -1.5406 4.7695 14 6 6.6940 -0.9837 3.0682 15 1 6.8978 -1.4892 2.1358 16 6 7.7359 -0.5203 3.8433 17 7 7.4877 0.0956 4.9784 18 14 9.5000 -0.7674 3.2809 19 1 9.5093 -1.4837 1.9801 20 1 10.1591 0.5540 3.1236 21 1 10.2342 -1.5694 4.2922 22 6 3.5669 -0.6147 1.3135 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6962 -1.6479 -1.2227 27 1 1.7503 -0.1989 -2.0372 28 1 0.5520 -2.2735 1.1170 29 1 2.0920 -2.6610 0.3132 30 1 1.6824 -2.4314 3.3295 31 1 1.8092 -3.9562 2.4194 32 1 3.9854 -3.2505 3.4776 33 1 4.0836 -3.3876 1.7031 34 1 8.2208 0.4213 5.5238 35 1 3.9988 -0.9913 0.3863 36 1 3.8549 0.4268 1.4566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -105.292669 kcal Electronic energy + Delta-G solvation = -19097.397242 eV Core-core repulsion = 16128.080205 eV Total energy + Delta-G solvation = -2969.317037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.84644 -35.51721 -35.15641 -33.87466 -33.01655 -31.45991 -30.13580 -28.52023 -26.05134 -24.35918 -23.11429 -21.12683 -19.12583 -18.64633 -17.17869 -16.29914 -16.09049 -15.18376 -14.93779 -14.47005 -14.26914 -13.98550 -13.45392 -13.33910 -13.14652 -12.90229 -12.65164 -12.54647 -11.94671 -11.58577 -11.34659 -11.18993 -11.15041 -10.79324 -10.67261 -10.54970 -10.49413 -10.21005 -10.19634 -9.87109 -9.74032 -9.20200 -8.84706 -8.68855 -7.99987 -6.63468 -5.24685 2.36543 3.09472 3.17551 3.25768 4.11426 4.58663 4.60521 4.69622 4.84632 4.98707 5.12116 5.26272 5.36533 5.40525 5.65851 5.79511 5.80330 5.88865 5.90476 5.94235 6.01671 6.09868 6.18040 6.31190 6.35381 6.43846 6.48414 6.61276 6.75348 7.00271 7.17768 7.39165 7.44906 7.72883 8.06129 8.95754 10.29771 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.006412 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.568623 B = 4366.000618 C = 4583.189164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.084 0.916 4 N -0.841 5.841 5 C -0.094 4.094 6 H 0.074 0.926 7 C -0.112 4.112 8 C -0.132 4.132 9 C 0.124 3.876 10 N -1.013 6.013 11 S 2.716 3.284 12 O -1.006 7.006 13 O -1.007 7.007 14 C -1.019 5.019 15 H 0.102 0.898 16 C 0.132 3.868 17 N -0.848 5.848 18 Si 0.919 3.081 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.135 3.865 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.338 0.662 27 H 0.336 0.664 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.289 0.711 35 H 0.071 0.929 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 -3.771 -10.360 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 H 0.102 0.898 4 N -0.370 5.370 5 C -0.114 4.114 6 H 0.092 0.908 7 C -0.149 4.149 8 C -0.171 4.171 9 C -0.002 4.002 10 N -0.848 5.848 11 S 2.817 3.183 12 O -0.996 6.996 13 O -0.997 6.997 14 C -1.152 5.152 15 H 0.120 0.880 16 C -0.085 4.085 17 N -0.478 5.478 18 Si 0.743 3.257 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.197 1.197 22 C 0.009 3.991 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.409 -3.120 -9.100 14.174 hybrid contribution 0.279 -0.403 -0.907 1.031 sum -10.130 -3.523 -10.008 14.669 Atomic orbital electron populations 1.22662 0.98056 1.01899 1.01979 1.21432 0.91663 0.98547 0.90519 0.89805 1.58905 1.67544 1.06455 1.04132 1.21550 0.97466 0.95685 0.96719 0.90794 1.21548 0.99555 0.95432 0.98389 1.21882 0.96959 0.99997 0.98262 1.21193 0.93857 0.82718 1.02462 1.58140 1.66507 1.18271 1.41862 1.00422 0.74414 0.72166 0.71266 1.93337 1.87163 1.32727 1.86373 1.93336 1.87973 1.71557 1.46858 1.30696 1.15217 1.51418 1.17897 0.87952 1.24761 1.01622 0.89679 0.92483 1.69910 1.35625 1.31252 1.10992 0.86151 0.80998 0.78829 0.79681 1.18598 1.19632 1.19658 1.21212 0.92152 0.96139 0.89618 0.92034 0.93070 0.92508 0.84799 0.85163 0.92631 0.91496 0.91797 0.91577 0.89173 0.92551 0.90036 0.91047 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 9.24 37.16 0.34 -1.41 16 2 C 0.09 1.04 3.12 -67.72 -0.21 0.83 16 3 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 4 N -0.84 -8.62 8.47 -4.67 -0.04 -8.66 16 5 C -0.09 -1.35 2.16 -90.51 -0.20 -1.54 16 6 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.11 -1.39 4.45 -26.69 -0.12 -1.51 16 8 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 9 C 0.12 2.19 6.48 -3.71 -0.02 2.16 16 10 N -1.01 -21.19 3.29 -113.46 -0.37 -21.57 16 11 S 2.72 74.00 5.01 -107.50 -0.54 73.46 16 12 O -1.01 -29.86 16.61 -57.17 -0.95 -30.81 16 13 O -1.01 -29.85 16.61 -57.17 -0.95 -30.80 16 14 C -1.02 -28.87 9.74 30.60 0.30 -28.57 16 15 H 0.10 2.70 7.81 -52.48 -0.41 2.29 16 16 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 17 N -0.85 -25.46 13.19 55.43 0.73 -24.73 16 18 Si 0.92 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.13 2.45 5.71 -3.67 -0.02 2.42 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 26 H 0.34 3.13 7.07 -39.29 -0.28 2.85 16 27 H 0.34 2.81 9.07 -39.29 -0.36 2.45 16 28 H 0.06 0.59 6.51 -51.93 -0.34 0.25 16 29 H 0.07 0.78 6.69 -51.93 -0.35 0.44 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.72 6.92 -51.93 -0.36 1.36 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.29 7.77 8.31 -40.82 -0.34 7.44 16 35 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 36 H 0.09 1.73 6.92 -51.92 -0.36 1.37 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -34.70 296.92 -8.13 -42.83 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.28 Total: 5.74 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -0.19 Total: -25.97 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.32 Total: -54.95 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -1.90 Total: -61.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 74.00 SS G_CDS: -0.54 Total: 73.46 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.70 -8.13 -42.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.466 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds