Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47051 * 2 1 4 4 N 1.46896 * 109.47254 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 119.99443 * 2 1 3 6 6 H 1.09002 * 109.49918 * 305.00302 * 5 2 1 7 7 C 1.53036 * 109.49372 * 65.06783 * 5 2 1 8 8 C 1.53046 * 109.53927 * 181.34583 * 7 5 2 9 9 C 1.53189 * 109.31336 * 298.63505 * 8 7 5 10 10 N 1.46935 * 108.77418 * 54.63373 * 9 8 7 11 11 S 1.65603 * 120.62952 * 126.41298 * 10 9 8 12 12 O 1.42098 * 106.39705 * 203.54048 * 11 10 9 13 13 O 1.42099 * 106.40125 * 336.45832 * 11 10 9 14 14 C 1.76197 * 107.21703 * 90.00051 * 11 10 9 15 15 H 1.08007 * 120.00022 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99791 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00213 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99893 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47454 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47350 * 120.00074 * 18 16 14 21 21 H 1.48499 * 109.47327 * 239.99884 * 18 16 14 22 22 C 1.46996 * 118.75211 * 306.39315 * 10 9 8 23 23 H 1.09007 * 109.47385 * 300.00112 * 1 2 3 24 24 H 1.08996 * 109.47558 * 60.00118 * 1 2 3 25 25 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.00903 * 111.00040 * 299.99978 * 4 2 1 27 27 H 1.00898 * 110.99967 * 63.95334 * 4 2 1 28 28 H 1.08997 * 109.46472 * 301.36555 * 7 5 2 29 29 H 1.09003 * 109.46560 * 61.34241 * 7 5 2 30 30 H 1.09001 * 109.49287 * 58.58732 * 8 7 5 31 31 H 1.09004 * 109.49898 * 178.64868 * 8 7 5 32 32 H 1.09001 * 109.58579 * 174.41761 * 9 8 7 33 33 H 1.08995 * 109.58826 * 294.84578 * 9 8 7 34 34 H 0.96998 * 119.99745 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.57815 * 293.82544 * 22 10 9 36 36 H 1.09007 * 109.62790 * 173.38404 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7211 1.2493 6 1 1.6057 -0.2619 2.1373 7 6 1.6369 -2.1961 1.1879 8 6 2.1175 -2.9112 2.4528 9 6 3.6453 -2.8304 2.5311 10 7 4.0493 -1.4203 2.4445 11 16 5.0300 -0.7513 3.5990 12 8 4.7903 0.6490 3.5665 13 8 4.8682 -1.5406 4.7695 14 6 6.6940 -0.9837 3.0682 15 1 6.8978 -1.4892 2.1358 16 6 7.7359 -0.5203 3.8433 17 7 7.4877 0.0956 4.9784 18 14 9.5000 -0.7674 3.2809 19 1 9.5093 -1.4837 1.9801 20 1 10.1591 0.5540 3.1236 21 1 10.2342 -1.5694 4.2922 22 6 3.5669 -0.6147 1.3135 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6962 -1.6479 -1.2227 27 1 1.7503 -0.1989 -2.0372 28 1 0.5520 -2.2735 1.1170 29 1 2.0920 -2.6610 0.3132 30 1 1.6824 -2.4314 3.3295 31 1 1.8092 -3.9562 2.4194 32 1 3.9854 -3.2505 3.4776 33 1 4.0836 -3.3876 1.7031 34 1 8.2208 0.4213 5.5238 35 1 3.9988 -0.9913 0.3863 36 1 3.8549 0.4268 1.4566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -133.881500 kcal Electronic energy + Delta-G solvation = -19098.636947 eV Core-core repulsion = 16128.080205 eV Total energy + Delta-G solvation = -2970.556741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03411 -37.47658 -36.61424 -36.13156 -35.17688 -32.79095 -31.31564 -29.36396 -28.25928 -25.62162 -24.38905 -22.35479 -20.73160 -20.25032 -18.97120 -18.34104 -17.14414 -17.00213 -16.64764 -15.97558 -15.65055 -15.38449 -15.14457 -14.68639 -14.35395 -14.08648 -13.97603 -13.70513 -13.56664 -13.30576 -13.03658 -12.77808 -12.58606 -12.50007 -12.37830 -12.29327 -12.17189 -11.86513 -11.65007 -11.27586 -11.25207 -11.06696 -10.93851 -9.77084 -9.37221 -8.74436 -7.49229 0.33262 1.31897 1.32312 1.50882 2.20281 2.56207 2.85425 3.72656 3.79972 3.81468 3.83392 4.08560 4.20548 4.29758 4.35327 4.47734 4.54924 4.60824 4.67602 4.71141 4.93941 4.98470 5.02618 5.10768 5.12317 5.16712 5.23956 5.27106 5.40510 5.52980 5.57461 5.90506 6.06059 6.40080 6.77107 6.78376 8.20235 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.006412 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.568623 B = 4366.000618 C = 4583.189164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 H 0.069 0.931 4 N -0.847 5.847 5 C -0.093 4.093 6 H 0.055 0.945 7 C -0.104 4.104 8 C -0.129 4.129 9 C 0.112 3.888 10 N -1.009 6.009 11 S 2.716 3.284 12 O -1.043 7.043 13 O -1.042 7.042 14 C -1.041 5.041 15 H 0.116 0.884 16 C 0.067 3.933 17 N -0.896 5.896 18 Si 0.992 3.008 19 H -0.248 1.248 20 H -0.258 1.258 21 H -0.257 1.257 22 C 0.130 3.870 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.347 0.653 27 H 0.349 0.651 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.299 0.701 35 H 0.085 0.915 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 -5.241 -12.807 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.016 4.016 3 H 0.088 0.912 4 N -0.379 5.379 5 C -0.113 4.113 6 H 0.074 0.926 7 C -0.141 4.141 8 C -0.168 4.168 9 C -0.013 4.013 10 N -0.848 5.848 11 S 2.819 3.181 12 O -1.033 7.033 13 O -1.033 7.033 14 C -1.175 5.175 15 H 0.134 0.866 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.810 3.190 19 H -0.171 1.171 20 H -0.182 1.182 21 H -0.181 1.181 22 C 0.005 3.995 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.856 -4.592 -11.549 16.502 hybrid contribution 0.348 0.040 -0.176 0.392 sum -10.508 -4.552 -11.725 16.390 Atomic orbital electron populations 1.22578 0.95942 1.02864 1.02452 1.21256 0.93174 0.97441 0.89713 0.91229 1.58826 1.67864 1.07103 1.04117 1.21533 0.94248 0.97883 0.97679 0.92642 1.21542 1.01429 0.93287 0.97889 1.21905 0.93863 1.02356 0.98704 1.21537 0.96811 0.80566 1.02389 1.57671 1.65682 1.19985 1.41414 0.99993 0.74912 0.71414 0.71767 1.93275 1.87715 1.35115 1.87245 1.93275 1.88519 1.71969 1.49502 1.31044 1.16137 1.51689 1.18580 0.86584 1.26074 1.07281 0.88847 0.92302 1.70000 1.37737 1.32497 1.12566 0.85084 0.74280 0.79688 0.79979 1.17075 1.18209 1.18112 1.21419 0.95177 0.94194 0.88676 0.92719 0.91509 0.91237 0.83776 0.83710 0.89720 0.89835 0.93426 0.88047 0.91362 0.89998 0.89114 0.89688 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.24 71.98 0.67 -2.20 16 2 C 0.10 2.05 3.12 44.92 0.14 2.19 16 3 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 4 N -0.85 -14.97 8.47 -168.68 -1.43 -16.40 16 5 C -0.09 -2.56 2.16 -10.72 -0.02 -2.59 16 6 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.10 -2.26 4.45 30.62 0.14 -2.12 16 8 C -0.13 -3.39 6.08 30.67 0.19 -3.21 16 9 C 0.11 3.87 6.48 86.36 0.56 4.43 16 10 N -1.01 -42.86 3.29 -512.89 -1.69 -44.55 16 11 S 2.72 153.96 5.01 -56.49 -0.28 153.67 16 12 O -1.04 -65.17 16.61 -128.00 -2.13 -67.30 16 13 O -1.04 -64.64 16.61 -128.00 -2.13 -66.77 16 14 C -1.04 -60.04 9.74 67.73 0.66 -59.38 16 15 H 0.12 6.12 7.81 -2.91 -0.02 6.10 16 16 C 0.07 3.88 5.46 84.65 0.46 4.34 16 17 N -0.90 -55.28 13.19 21.45 0.28 -55.00 16 18 Si 0.99 42.64 29.54 68.60 2.03 44.66 16 19 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 22 C 0.13 4.75 5.71 86.35 0.49 5.24 16 23 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.95 6.54 -2.39 -0.02 0.93 16 26 H 0.35 5.07 7.07 -89.69 -0.63 4.44 16 27 H 0.35 4.81 9.07 -89.70 -0.81 3.99 16 28 H 0.08 1.42 6.51 -2.39 -0.02 1.40 16 29 H 0.08 1.59 6.69 -2.39 -0.02 1.57 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.07 2.65 6.92 -2.39 -0.02 2.63 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.30 16.44 8.31 -92.71 -0.77 15.67 16 35 H 0.08 2.83 7.63 -2.38 -0.02 2.82 16 36 H 0.06 2.43 6.92 -2.38 -0.02 2.41 16 Total: -1.00 -78.32 296.92 -2.42 -80.74 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.35 Total: 24.23 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 3.28 Total: -53.30 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -2.83 Total: -115.95 kcal Atomic # 8 Polarization: -129.81 SS G_CDS: -4.25 Total: -134.07 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 153.96 SS G_CDS: -0.28 Total: 153.67 kcal Total: -78.32 -2.42 -80.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.140 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds