Wall clock time and date at job start Mon Mar 30 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49362 * 2 1 4 4 C 1.53044 * 109.49465 * 239.94002 * 2 1 3 5 5 C 1.53039 * 109.53610 * 301.41374 * 4 2 1 6 6 C 1.53198 * 109.31075 * 298.63366 * 5 4 2 7 7 N 1.46925 * 108.77616 * 54.63838 * 6 5 4 8 8 S 1.65598 * 120.63325 * 126.36702 * 7 6 5 9 9 O 1.42107 * 106.39883 * 346.91441 * 8 7 6 10 10 O 1.42097 * 106.40387 * 213.99555 * 8 7 6 11 11 C 1.76203 * 107.21806 * 100.45303 * 8 7 6 12 12 H 1.07993 * 119.99873 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99781 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99877 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99365 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47312 * 59.99979 * 15 13 11 17 17 H 1.48497 * 109.47221 * 299.99326 * 15 13 11 18 18 H 1.48513 * 109.46637 * 179.97438 * 15 13 11 19 19 C 1.46932 * 118.73456 * 306.64191 * 7 6 5 20 20 H 1.08995 * 109.58926 * 293.56774 * 19 7 6 21 21 C 1.53005 * 109.58038 * 173.14182 * 19 7 6 22 22 N 1.46895 * 109.47161 * 60.29988 * 21 19 7 23 23 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46589 * 300.06121 * 1 2 3 25 25 H 1.08998 * 109.47639 * 60.05891 * 1 2 3 26 26 H 1.08998 * 109.45593 * 181.38938 * 4 2 1 27 27 H 1.09003 * 109.46131 * 61.43201 * 4 2 1 28 28 H 1.09006 * 109.49498 * 178.68589 * 5 4 2 29 29 H 1.08994 * 109.52854 * 58.60313 * 5 4 2 30 30 H 1.09004 * 109.58520 * 294.85036 * 6 5 4 31 31 H 1.08997 * 109.58308 * 174.42568 * 6 5 4 32 32 H 0.96999 * 120.00491 * 0.02562 * 14 13 11 33 33 H 1.09009 * 109.46470 * 180.29338 * 21 19 7 34 34 H 1.08999 * 109.47554 * 300.29306 * 21 19 7 35 35 H 1.00903 * 111.00517 * 56.03931 * 22 21 19 36 36 H 1.00903 * 111.00416 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7227 -1.2487 5 6 1.5029 -2.1553 -1.2668 6 6 2.0140 -2.9040 -0.0318 7 7 1.6516 -2.1386 1.1688 8 16 0.8191 -2.8561 2.4076 9 8 0.3360 -4.0934 1.9026 10 8 -0.0290 -1.8553 2.9538 11 6 1.9910 -3.2541 3.6618 12 1 3.0351 -3.0177 3.5198 13 6 1.5750 -3.8683 4.8240 14 7 0.3036 -4.1567 4.9966 15 14 2.8173 -4.2896 6.1539 16 1 3.4812 -3.0468 6.6227 17 1 3.8369 -5.2179 5.6027 18 1 2.1211 -4.9387 7.2939 19 6 2.0365 -0.7227 1.2468 20 1 3.1223 -0.6414 1.2972 21 6 1.4135 -0.0898 2.4928 22 7 1.8978 -0.7881 3.6910 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5148 0.8895 25 1 -0.3634 0.5129 -0.8905 26 1 3.1304 -0.7439 -1.2356 27 1 1.6986 -0.1951 -2.1390 28 1 1.8480 -2.6621 -2.1681 29 1 0.4132 -2.1355 -1.2551 30 1 3.0980 -3.0042 -0.0879 31 1 1.5554 -3.8918 0.0124 32 1 -0.3416 -3.9376 4.3061 33 1 1.6960 0.9617 2.5460 34 1 0.3280 -0.1721 2.4381 35 1 2.9060 -0.7816 3.7306 36 1 1.5007 -0.3882 4.5279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:52 Heat of formation + Delta-G solvation = -65.315856 kcal Electronic energy + Delta-G solvation = -20272.611612 eV Core-core repulsion = 17305.028100 eV Total energy + Delta-G solvation = -2967.583512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05520 -35.80873 -34.13101 -33.45647 -32.91096 -32.45078 -30.48003 -26.70887 -25.46065 -24.65699 -22.90121 -21.19438 -19.04128 -18.82951 -17.11993 -16.10243 -15.56032 -15.00708 -14.83069 -14.40399 -13.94943 -13.84554 -13.63302 -13.31428 -13.07811 -12.80376 -12.31997 -12.11855 -11.76569 -11.50375 -11.16733 -10.92521 -10.86869 -10.69406 -10.65854 -10.45546 -10.21661 -10.17403 -10.02913 -9.95697 -9.07104 -8.84617 -8.45834 -7.82333 -7.58925 -6.78897 -4.72471 2.47835 3.35086 3.37001 3.56701 4.32564 4.52197 4.91199 4.98969 5.04753 5.07323 5.33624 5.52276 5.59169 5.64953 5.74610 5.83480 5.88167 5.91832 5.99128 6.04702 6.11597 6.22534 6.26226 6.33238 6.37069 6.42877 6.59278 6.67140 6.88459 7.09511 7.78826 7.99564 8.04794 8.37539 8.42076 9.03468 10.58171 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.008993 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.569335 B = 3112.657808 C = 3304.660008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.108 4.108 5 C -0.136 4.136 6 C 0.120 3.880 7 N -0.996 5.996 8 S 2.718 3.282 9 O -1.036 7.036 10 O -0.999 6.999 11 C -1.011 5.011 12 H 0.091 0.909 13 C 0.085 3.915 14 N -0.868 5.868 15 Si 1.076 2.924 16 H -0.282 1.282 17 H -0.283 1.283 18 H -0.279 1.279 19 C 0.173 3.827 20 H 0.056 0.944 21 C 0.018 3.982 22 N -0.806 5.806 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.271 0.729 33 H 0.013 0.987 34 H 0.131 0.869 35 H 0.325 0.675 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 8.468 -8.823 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 H 0.089 0.911 4 C -0.146 4.146 5 C -0.175 4.175 6 C -0.007 4.007 7 N -0.831 5.831 8 S 2.822 3.178 9 O -1.026 7.026 10 O -0.989 6.989 11 C -1.148 5.148 12 H 0.109 0.891 13 C -0.130 4.130 14 N -0.501 5.501 15 Si 0.901 3.099 16 H -0.208 1.208 17 H -0.209 1.209 18 H -0.204 1.204 19 C 0.065 3.935 20 H 0.074 0.926 21 C -0.113 4.113 22 N -0.338 5.338 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.031 0.969 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.115 6.998 -7.683 11.177 hybrid contribution 1.142 1.743 -1.072 2.344 sum 5.256 8.741 -8.756 13.442 Atomic orbital electron populations 1.21915 0.94965 1.02471 1.01225 1.21360 0.96741 0.98635 0.95261 0.91052 1.21471 1.00128 0.95891 0.97102 1.21951 1.01558 0.95936 0.98026 1.21237 0.99454 0.95591 0.84396 1.57840 1.75883 1.17135 1.32215 1.00287 0.74243 0.71063 0.72219 1.93356 1.81387 1.46153 1.81724 1.93261 1.68281 1.59055 1.78281 1.31055 1.11277 1.52263 1.20161 0.89104 1.25594 0.98654 0.90070 0.98676 1.70830 1.01916 1.40721 1.36608 0.83504 0.74451 0.76729 0.75189 1.20767 1.20885 1.20393 1.20664 0.97640 0.81095 0.94108 0.92620 1.22901 1.05276 0.93292 0.89880 1.59430 1.11100 1.58976 1.04294 0.92231 0.91909 0.93397 0.92208 0.92359 0.91621 0.91417 0.92725 0.88992 0.91665 0.96886 0.85175 0.86301 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.18 37.16 0.30 -1.91 16 2 C -0.10 -1.39 2.80 -90.72 -0.25 -1.65 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.37 5.43 -26.69 -0.14 -1.51 16 5 C -0.14 -1.92 5.74 -26.61 -0.15 -2.08 16 6 C 0.12 2.10 6.51 -3.71 -0.02 2.08 16 7 N -1.00 -19.96 2.74 -106.70 -0.29 -20.26 16 8 S 2.72 70.19 3.74 -107.50 -0.40 69.79 16 9 O -1.04 -30.37 16.02 -57.17 -0.92 -31.29 16 10 O -1.00 -26.56 12.21 -57.17 -0.70 -27.26 16 11 C -1.01 -27.16 6.93 30.60 0.21 -26.94 16 12 H 0.09 2.29 7.49 -52.49 -0.39 1.89 16 13 C 0.08 2.40 5.46 -17.82 -0.10 2.30 16 14 N -0.87 -26.80 13.66 55.43 0.76 -26.04 16 15 Si 1.08 24.42 29.90 -169.99 -5.08 19.34 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.17 2.92 2.82 -67.82 -0.19 2.73 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 C 0.02 0.32 4.87 -3.82 -0.02 0.31 16 22 N -0.81 -15.97 3.99 -10.37 -0.04 -16.01 16 23 H 0.06 1.02 5.97 -51.93 -0.31 0.71 16 24 H 0.06 0.96 6.33 -51.93 -0.33 0.63 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.78 6.72 -51.93 -0.35 1.43 16 32 H 0.27 8.68 6.52 -40.82 -0.27 8.41 16 33 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.13 2.66 3.94 -51.99 -0.20 2.46 16 35 H 0.32 5.78 8.63 -39.29 -0.34 5.44 16 36 H 0.34 6.65 9.08 -39.29 -0.36 6.30 16 LS Contribution 278.47 15.07 4.20 4.20 Total: -1.00 -33.36 278.47 -7.90 -41.27 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.05 Total: 12.94 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -0.37 Total: -26.68 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.42 Total: -62.31 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -1.61 Total: -58.54 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.08 Total: 19.34 kcal Atomic # 16 Polarization: 70.19 SS G_CDS: -0.40 Total: 69.79 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.36 -7.90 -41.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.051 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds