Wall clock time and date at job start Mon Mar 30 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49362 * 2 1 4 4 C 1.53044 * 109.49465 * 239.94002 * 2 1 3 5 5 C 1.53039 * 109.53610 * 301.41374 * 4 2 1 6 6 C 1.53198 * 109.31075 * 298.63366 * 5 4 2 7 7 N 1.46925 * 108.77616 * 54.63838 * 6 5 4 8 8 S 1.65598 * 120.63325 * 126.36702 * 7 6 5 9 9 O 1.42107 * 106.39883 * 346.91441 * 8 7 6 10 10 O 1.42097 * 106.40387 * 213.99555 * 8 7 6 11 11 C 1.76203 * 107.21806 * 100.45303 * 8 7 6 12 12 H 1.07993 * 119.99873 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99781 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99877 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99365 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47312 * 59.99979 * 15 13 11 17 17 H 1.48497 * 109.47221 * 299.99326 * 15 13 11 18 18 H 1.48513 * 109.46637 * 179.97438 * 15 13 11 19 19 C 1.46932 * 118.73456 * 306.64191 * 7 6 5 20 20 H 1.08995 * 109.58926 * 293.56774 * 19 7 6 21 21 C 1.53005 * 109.58038 * 173.14182 * 19 7 6 22 22 N 1.46895 * 109.47161 * 60.29988 * 21 19 7 23 23 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46589 * 300.06121 * 1 2 3 25 25 H 1.08998 * 109.47639 * 60.05891 * 1 2 3 26 26 H 1.08998 * 109.45593 * 181.38938 * 4 2 1 27 27 H 1.09003 * 109.46131 * 61.43201 * 4 2 1 28 28 H 1.09006 * 109.49498 * 178.68589 * 5 4 2 29 29 H 1.08994 * 109.52854 * 58.60313 * 5 4 2 30 30 H 1.09004 * 109.58520 * 294.85036 * 6 5 4 31 31 H 1.08997 * 109.58308 * 174.42568 * 6 5 4 32 32 H 0.96999 * 120.00491 * 0.02562 * 14 13 11 33 33 H 1.09009 * 109.46470 * 180.29338 * 21 19 7 34 34 H 1.08999 * 109.47554 * 300.29306 * 21 19 7 35 35 H 1.00903 * 111.00517 * 56.03931 * 22 21 19 36 36 H 1.00903 * 111.00416 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7227 -1.2487 5 6 1.5029 -2.1553 -1.2668 6 6 2.0140 -2.9040 -0.0318 7 7 1.6516 -2.1386 1.1688 8 16 0.8191 -2.8561 2.4076 9 8 0.3360 -4.0934 1.9026 10 8 -0.0290 -1.8553 2.9538 11 6 1.9910 -3.2541 3.6618 12 1 3.0351 -3.0177 3.5198 13 6 1.5750 -3.8683 4.8240 14 7 0.3036 -4.1567 4.9966 15 14 2.8173 -4.2896 6.1539 16 1 3.4812 -3.0468 6.6227 17 1 3.8369 -5.2179 5.6027 18 1 2.1211 -4.9387 7.2939 19 6 2.0365 -0.7227 1.2468 20 1 3.1223 -0.6414 1.2972 21 6 1.4135 -0.0898 2.4928 22 7 1.8978 -0.7881 3.6910 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5148 0.8895 25 1 -0.3634 0.5129 -0.8905 26 1 3.1304 -0.7439 -1.2356 27 1 1.6986 -0.1951 -2.1390 28 1 1.8480 -2.6621 -2.1681 29 1 0.4132 -2.1355 -1.2551 30 1 3.0980 -3.0042 -0.0879 31 1 1.5554 -3.8918 0.0124 32 1 -0.3416 -3.9376 4.3061 33 1 1.6960 0.9617 2.5460 34 1 0.3280 -0.1721 2.4381 35 1 2.9060 -0.7816 3.7306 36 1 1.5007 -0.3882 4.5279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:52 Heat of formation + Delta-G solvation = -91.458875 kcal Electronic energy + Delta-G solvation = -20273.745258 eV Core-core repulsion = 17305.028100 eV Total energy + Delta-G solvation = -2968.717158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.34502 -37.73550 -36.20937 -35.09024 -34.93041 -33.87755 -31.82874 -27.93605 -27.41527 -26.20828 -24.22822 -22.53730 -21.05458 -20.23295 -18.77412 -17.91244 -17.11375 -16.58865 -16.41071 -15.90851 -15.62366 -15.45424 -15.18142 -14.90817 -14.50674 -14.17954 -14.02167 -13.47357 -13.36698 -12.87079 -12.77415 -12.73272 -12.47190 -12.33478 -12.27418 -12.06530 -11.94554 -11.71617 -11.44113 -11.19106 -10.95063 -10.67696 -10.32715 -9.51810 -9.15411 -8.97289 -6.90030 0.55375 1.53270 1.59704 1.80479 2.50640 2.82421 2.93171 3.68392 3.75623 3.89519 3.98593 4.15522 4.28244 4.29153 4.37954 4.52103 4.56839 4.65918 4.71864 4.85045 4.87617 4.93284 5.01985 5.10356 5.12981 5.27778 5.33482 5.42022 5.52597 5.61866 5.82616 6.16037 6.19145 6.57802 6.91674 6.95650 8.33754 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.008993 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.569335 B = 3112.657808 C = 3304.660008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 H 0.104 0.896 4 C -0.103 4.103 5 C -0.133 4.133 6 C 0.109 3.891 7 N -0.993 5.993 8 S 2.720 3.280 9 O -1.082 7.082 10 O -1.016 7.016 11 C -1.008 5.008 12 H 0.106 0.894 13 C 0.030 3.970 14 N -0.906 5.906 15 Si 1.117 2.883 16 H -0.250 1.250 17 H -0.264 1.264 18 H -0.284 1.284 19 C 0.165 3.835 20 H 0.078 0.922 21 C 0.018 3.982 22 N -0.831 5.831 23 H 0.027 0.973 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.248 0.752 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.335 0.665 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 10.359 -10.185 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.140 4.140 5 C -0.172 4.172 6 C -0.017 4.017 7 N -0.831 5.831 8 S 2.825 3.175 9 O -1.073 7.073 10 O -1.005 7.005 11 C -1.144 5.144 12 H 0.125 0.875 13 C -0.176 4.176 14 N -0.541 5.541 15 Si 0.935 3.065 16 H -0.174 1.174 17 H -0.189 1.189 18 H -0.210 1.210 19 C 0.059 3.941 20 H 0.096 0.904 21 C -0.114 4.114 22 N -0.364 5.364 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.149 0.851 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.847 8.906 -9.072 14.439 hybrid contribution 0.304 1.220 -0.744 1.461 sum 7.151 10.126 -9.816 15.812 Atomic orbital electron populations 1.21927 0.96179 1.00629 1.02009 1.21419 0.95676 1.00150 0.94397 0.87779 1.21486 1.01106 0.94229 0.97218 1.21952 1.00668 0.97381 0.97175 1.21496 1.00731 0.94591 0.84854 1.57387 1.75634 1.18664 1.31453 0.99875 0.74531 0.70369 0.72740 1.93291 1.82536 1.48837 1.82595 1.93268 1.69201 1.58831 1.79243 1.31356 1.12235 1.50817 1.20007 0.87549 1.27226 0.99225 0.89507 1.01668 1.70995 1.02990 1.43788 1.36319 0.83045 0.72699 0.78210 0.72540 1.17416 1.18910 1.20997 1.21025 0.98814 0.79129 0.95138 0.90443 1.22819 1.03577 0.95247 0.89731 1.59247 1.11981 1.60214 1.04910 0.95400 0.93091 0.90701 0.90419 0.89684 0.88748 0.93044 0.90352 0.92030 0.94105 0.93416 0.88156 0.85098 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 8.18 71.98 0.59 -3.64 16 2 C -0.10 -2.34 2.80 -10.86 -0.03 -2.37 16 3 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.10 -2.11 5.43 30.62 0.17 -1.95 16 5 C -0.13 -3.43 5.74 30.67 0.18 -3.26 16 6 C 0.11 3.70 6.51 86.36 0.56 4.26 16 7 N -0.99 -39.08 2.74 -491.50 -1.34 -40.43 16 8 S 2.72 144.22 3.74 -56.49 -0.21 144.01 16 9 O -1.08 -66.55 16.02 -128.00 -2.05 -68.60 16 10 O -1.02 -56.04 12.21 -128.00 -1.56 -57.61 16 11 C -1.01 -54.32 6.93 67.73 0.47 -53.85 16 12 H 0.11 5.22 7.49 -2.91 -0.02 5.20 16 13 C 0.03 1.70 5.46 84.66 0.46 2.16 16 14 N -0.91 -57.88 13.66 21.45 0.29 -57.59 16 15 Si 1.12 48.32 29.90 68.60 2.05 50.37 16 16 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.17 5.16 2.82 44.83 0.13 5.29 16 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 21 C 0.02 0.61 4.87 86.31 0.42 1.03 16 22 N -0.83 -32.23 3.99 -186.71 -0.75 -32.98 16 23 H 0.03 0.94 5.97 -2.39 -0.01 0.93 16 24 H 0.05 1.52 6.33 -2.38 -0.02 1.51 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.05 1.50 6.34 -2.39 -0.02 1.48 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.45 6.72 -2.39 -0.02 2.43 16 32 H 0.25 16.73 6.52 -92.71 -0.60 16.13 16 33 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.10 4.13 3.94 -3.31 -0.01 4.12 16 35 H 0.34 11.32 8.63 -89.69 -0.77 10.55 16 36 H 0.34 13.22 9.08 -89.69 -0.81 12.40 16 Total: -1.00 -76.01 278.47 -0.95 -76.96 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.32 Total: 38.15 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 2.94 Total: -52.30 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -1.80 Total: -130.99 kcal Atomic # 8 Polarization: -122.59 SS G_CDS: -3.61 Total: -126.21 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Atomic # 16 Polarization: 144.22 SS G_CDS: -0.21 Total: 144.01 kcal Total: -76.01 -0.95 -76.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.496 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds