Wall clock time and date at job start Mon Mar 30 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58675 * 2 1 4 4 C 1.53183 * 109.70724 * 120.36062 * 2 1 3 5 5 C 1.53046 * 109.31719 * 174.49195 * 4 2 1 6 6 C 1.53040 * 109.53445 * 298.63712 * 5 4 2 7 7 H 1.08997 * 109.49722 * 301.40715 * 6 5 4 8 8 C 1.53001 * 109.49546 * 181.31133 * 6 5 4 9 9 N 1.46908 * 109.46831 * 65.16419 * 8 6 5 10 10 C 1.53192 * 109.31300 * 61.36275 * 6 5 4 11 11 N 1.46924 * 109.58631 * 239.72370 * 2 1 3 12 12 S 1.65597 * 120.63087 * 6.48064 * 11 2 1 13 13 O 1.42095 * 106.40391 * 32.81071 * 12 11 2 14 14 O 1.42104 * 106.40501 * 165.72700 * 12 11 2 15 15 C 1.76205 * 107.22068 * 279.26996 * 12 11 2 16 16 H 1.08001 * 119.99549 * 0.02562 * 15 12 11 17 17 C 1.37869 * 120.00312 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99917 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00125 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46904 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47591 * 120.00041 * 19 17 15 22 22 H 1.48504 * 109.47229 * 240.00286 * 19 17 15 23 23 H 1.09000 * 109.47060 * 167.65151 * 1 2 3 24 24 H 1.09004 * 109.47058 * 287.64912 * 1 2 3 25 25 H 1.08997 * 109.47134 * 47.65077 * 1 2 3 26 26 H 1.09001 * 109.49827 * 294.44093 * 4 2 1 27 27 H 1.08995 * 109.49847 * 54.53943 * 4 2 1 28 28 H 1.08998 * 109.45503 * 58.65410 * 5 4 2 29 29 H 1.08996 * 109.46124 * 178.61469 * 5 4 2 30 30 H 1.08998 * 109.47194 * 185.15499 * 8 6 5 31 31 H 1.08996 * 109.47735 * 305.16280 * 8 6 5 32 32 H 1.00892 * 111.00417 * 56.04175 * 9 8 6 33 33 H 1.00900 * 110.99766 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.58384 * 185.57531 * 10 6 5 35 35 H 1.09003 * 109.58689 * 65.15270 * 10 6 5 36 36 H 0.96997 * 119.99741 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 1.2443 5 6 3.5707 -0.8444 1.1672 6 6 3.9602 -1.6607 -0.0673 7 1 3.5037 -2.6488 -0.0090 8 6 5.4824 -1.8033 -0.1257 9 7 5.9443 -2.5962 1.0216 10 6 3.4653 -0.9423 -1.3266 11 7 2.0225 -0.6979 -1.1954 12 16 0.9715 -1.1990 -2.3729 13 8 -0.0816 -0.2455 -2.4031 14 8 1.7637 -1.5182 -3.5086 15 6 0.2562 -2.7129 -1.8237 16 1 0.5406 -3.1292 -0.8686 17 6 -0.6672 -3.3653 -2.6127 18 7 -1.0138 -2.8579 -3.7756 19 14 -1.4259 -4.9697 -2.0302 20 1 -0.8720 -5.3245 -0.6988 21 1 -2.8990 -4.8125 -1.9282 22 1 -1.1093 -6.0482 -3.0008 23 1 -0.3633 -1.0039 -0.2198 24 1 -0.3633 0.3116 0.9793 25 1 -0.3633 0.6923 -0.7595 26 1 1.7690 -0.1673 2.1364 27 1 1.6081 -1.7257 1.2903 28 1 4.0071 0.1519 1.0964 29 1 3.9430 -1.3409 2.0632 30 1 5.7651 -2.3049 -1.0512 31 1 5.9415 -0.8153 -0.0929 32 1 5.4838 -3.4935 1.0499 33 1 6.9472 -2.7051 1.0056 34 1 3.6523 -1.5663 -2.2006 35 1 3.9886 0.0078 -1.4347 36 1 -1.6632 -3.3171 -4.3308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:26 Heat of formation + Delta-G solvation = -98.815481 kcal Electronic energy + Delta-G solvation = -19465.319651 eV Core-core repulsion = 16496.283486 eV Total energy + Delta-G solvation = -2969.036165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.59938 -35.70040 -34.82239 -33.93299 -33.09027 -31.46935 -31.34770 -27.19373 -26.11621 -23.77489 -23.09432 -21.06556 -19.87620 -18.38765 -17.15513 -16.06693 -15.84156 -15.27498 -14.92023 -14.55139 -14.26698 -14.11061 -13.57311 -13.46534 -13.24486 -12.68224 -12.19138 -12.00505 -11.71562 -11.61549 -11.32788 -11.23159 -10.99878 -10.72046 -10.59780 -10.51568 -10.43382 -10.21981 -10.10805 -9.97713 -9.27639 -9.18140 -8.83033 -8.67321 -8.08350 -6.68297 -5.28753 2.31894 3.04746 3.13488 3.20527 4.05704 4.50068 4.60354 4.65504 5.00310 5.16255 5.29631 5.41388 5.62557 5.66615 5.76896 5.82659 5.86821 5.93958 6.05208 6.16077 6.19934 6.22352 6.37444 6.40894 6.53312 6.55093 6.69188 6.87096 6.96326 7.10214 7.29881 7.36402 7.40050 7.71926 8.00805 8.90693 10.24967 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.008252 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.754949 B = 3392.275311 C = 3694.122556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.163 3.837 3 H 0.060 0.940 4 C -0.132 4.132 5 C -0.099 4.099 6 C -0.102 4.102 7 H 0.075 0.925 8 C 0.065 3.935 9 N -0.850 5.850 10 C 0.129 3.871 11 N -1.008 6.008 12 S 2.718 3.282 13 O -1.000 7.000 14 O -1.010 7.010 15 C -1.017 5.017 16 H 0.102 0.898 17 C 0.134 3.866 18 N -0.846 5.846 19 Si 0.916 3.084 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.272 1.272 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.340 0.660 33 H 0.337 0.663 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.738 1.242 9.115 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.056 3.944 3 H 0.078 0.922 4 C -0.171 4.171 5 C -0.136 4.136 6 C -0.123 4.123 7 H 0.094 0.906 8 C -0.066 4.066 9 N -0.379 5.379 10 C 0.002 3.998 11 N -0.843 5.843 12 S 2.819 3.181 13 O -0.990 6.990 14 O -1.001 7.001 15 C -1.150 5.150 16 H 0.120 0.880 17 C -0.084 4.084 18 N -0.476 5.476 19 Si 0.740 3.260 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.197 1.197 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.173 2.339 8.554 12.060 hybrid contribution -0.094 -2.090 0.004 2.093 sum 8.078 0.249 8.558 11.771 Atomic orbital electron populations 1.22806 0.93359 1.06500 1.02869 1.20717 0.94534 0.94590 0.84516 0.92213 1.22032 0.96111 1.01545 0.97461 1.21380 0.95139 0.99411 0.97696 1.21562 0.93922 1.00506 0.96276 0.90614 1.21798 0.95542 0.98093 0.91151 1.58720 1.10473 1.22781 1.45897 1.21183 0.81443 0.99516 0.97612 1.58240 1.16516 1.73154 1.36431 1.00423 0.71552 0.75281 0.70806 1.93346 1.55509 1.64022 1.86153 1.93325 1.71313 1.86304 1.49122 1.30669 1.38072 1.30743 1.15508 0.88005 1.24729 0.92800 0.98192 0.92682 1.69908 1.29024 1.39053 1.09613 0.86196 0.79054 0.80967 0.79750 1.18620 1.19605 1.19697 0.90063 0.92616 0.87932 0.91783 0.91365 0.92699 0.91238 0.95240 0.91066 0.84750 0.85140 0.89139 0.92604 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.83 7.70 37.16 0.29 -3.54 16 2 C 0.16 2.91 3.48 -67.61 -0.24 2.68 16 3 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -2.00 5.35 -26.61 -0.14 -2.14 16 5 C -0.10 -1.36 5.07 -26.69 -0.14 -1.49 16 6 C -0.10 -1.50 2.48 -90.50 -0.22 -1.72 16 7 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 8 C 0.07 0.78 6.18 -3.82 -0.02 0.76 16 9 N -0.85 -8.83 9.06 -10.37 -0.09 -8.92 16 10 C 0.13 2.28 5.71 -3.71 -0.02 2.25 16 11 N -1.01 -20.81 3.29 -106.48 -0.35 -21.16 16 12 S 2.72 72.13 4.39 -107.50 -0.47 71.66 16 13 O -1.00 -28.36 13.93 -57.17 -0.80 -29.15 16 14 O -1.01 -29.62 16.49 -57.17 -0.94 -30.56 16 15 C -1.02 -27.68 8.24 30.60 0.25 -27.43 16 16 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 17 C 0.13 3.70 5.46 -17.82 -0.10 3.61 16 18 N -0.85 -24.81 13.19 55.43 0.73 -24.08 16 19 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H 0.08 1.77 5.69 -51.93 -0.30 1.48 16 24 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 25 H 0.10 2.20 6.08 -51.93 -0.32 1.89 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.34 3.40 8.99 -39.30 -0.35 3.04 16 33 H 0.34 2.80 9.08 -39.29 -0.36 2.45 16 34 H 0.09 1.72 6.89 -51.93 -0.36 1.36 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -33.14 294.68 -8.27 -41.41 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.43 Total: 7.88 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -0.34 Total: -27.03 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.29 Total: -54.16 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -1.74 Total: -59.71 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 72.13 SS G_CDS: -0.47 Total: 71.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.14 -8.27 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.406 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds