Wall clock time and date at job start Mon Mar 30 2020 04:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58675 * 2 1 4 4 C 1.53183 * 109.70724 * 120.36062 * 2 1 3 5 5 C 1.53046 * 109.31719 * 174.49195 * 4 2 1 6 6 C 1.53040 * 109.53445 * 298.63712 * 5 4 2 7 7 H 1.08997 * 109.49722 * 301.40715 * 6 5 4 8 8 C 1.53001 * 109.49546 * 181.31133 * 6 5 4 9 9 N 1.46908 * 109.46831 * 65.16419 * 8 6 5 10 10 C 1.53192 * 109.31300 * 61.36275 * 6 5 4 11 11 N 1.46924 * 109.58631 * 239.72370 * 2 1 3 12 12 S 1.65597 * 120.63087 * 6.48064 * 11 2 1 13 13 O 1.42095 * 106.40391 * 32.81071 * 12 11 2 14 14 O 1.42104 * 106.40501 * 165.72700 * 12 11 2 15 15 C 1.76205 * 107.22068 * 279.26996 * 12 11 2 16 16 H 1.08001 * 119.99549 * 0.02562 * 15 12 11 17 17 C 1.37869 * 120.00312 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99917 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00125 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46904 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47591 * 120.00041 * 19 17 15 22 22 H 1.48504 * 109.47229 * 240.00286 * 19 17 15 23 23 H 1.09000 * 109.47060 * 167.65151 * 1 2 3 24 24 H 1.09004 * 109.47058 * 287.64912 * 1 2 3 25 25 H 1.08997 * 109.47134 * 47.65077 * 1 2 3 26 26 H 1.09001 * 109.49827 * 294.44093 * 4 2 1 27 27 H 1.08995 * 109.49847 * 54.53943 * 4 2 1 28 28 H 1.08998 * 109.45503 * 58.65410 * 5 4 2 29 29 H 1.08996 * 109.46124 * 178.61469 * 5 4 2 30 30 H 1.08998 * 109.47194 * 185.15499 * 8 6 5 31 31 H 1.08996 * 109.47735 * 305.16280 * 8 6 5 32 32 H 1.00892 * 111.00417 * 56.04175 * 9 8 6 33 33 H 1.00900 * 110.99766 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.58384 * 185.57531 * 10 6 5 35 35 H 1.09003 * 109.58689 * 65.15270 * 10 6 5 36 36 H 0.96997 * 119.99741 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 1.2443 5 6 3.5707 -0.8444 1.1672 6 6 3.9602 -1.6607 -0.0673 7 1 3.5037 -2.6488 -0.0090 8 6 5.4824 -1.8033 -0.1257 9 7 5.9443 -2.5962 1.0216 10 6 3.4653 -0.9423 -1.3266 11 7 2.0225 -0.6979 -1.1954 12 16 0.9715 -1.1990 -2.3729 13 8 -0.0816 -0.2455 -2.4031 14 8 1.7637 -1.5182 -3.5086 15 6 0.2562 -2.7129 -1.8237 16 1 0.5406 -3.1292 -0.8686 17 6 -0.6672 -3.3653 -2.6127 18 7 -1.0138 -2.8579 -3.7756 19 14 -1.4259 -4.9697 -2.0302 20 1 -0.8720 -5.3245 -0.6988 21 1 -2.8990 -4.8125 -1.9282 22 1 -1.1093 -6.0482 -3.0008 23 1 -0.3633 -1.0039 -0.2198 24 1 -0.3633 0.3116 0.9793 25 1 -0.3633 0.6923 -0.7595 26 1 1.7690 -0.1673 2.1364 27 1 1.6081 -1.7257 1.2903 28 1 4.0071 0.1519 1.0964 29 1 3.9430 -1.3409 2.0632 30 1 5.7651 -2.3049 -1.0512 31 1 5.9415 -0.8153 -0.0929 32 1 5.4838 -3.4935 1.0499 33 1 6.9472 -2.7051 1.0056 34 1 3.6523 -1.5663 -2.2006 35 1 3.9886 0.0078 -1.4347 36 1 -1.6632 -3.3171 -4.3308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:25 Heat of formation + Delta-G solvation = -125.824492 kcal Electronic energy + Delta-G solvation = -19466.490849 eV Core-core repulsion = 16496.283486 eV Total energy + Delta-G solvation = -2970.207363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91760 -37.67991 -36.20678 -36.00791 -35.18490 -32.90625 -32.51470 -28.57195 -28.18817 -25.10766 -24.30503 -22.46338 -21.21900 -20.27126 -19.05947 -17.92483 -17.17254 -16.95244 -16.51610 -15.93828 -15.63039 -15.41513 -15.23895 -15.04173 -14.64048 -14.04374 -13.90832 -13.49953 -13.29767 -13.18962 -13.07386 -12.97638 -12.46804 -12.41636 -12.35764 -12.29245 -12.02539 -11.70286 -11.55979 -11.32450 -11.26994 -11.00949 -10.77885 -9.69007 -9.49445 -8.73748 -7.45062 0.35297 1.29891 1.31281 1.48336 2.18828 2.57532 2.82391 3.64354 3.73612 3.83359 3.97274 4.08266 4.19345 4.35082 4.42911 4.47823 4.54305 4.64315 4.74024 4.81741 4.85464 4.89233 5.01281 5.12408 5.16147 5.26861 5.33562 5.44568 5.46989 5.62888 5.70690 5.93718 6.09178 6.27904 6.67725 6.78982 8.21147 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.008252 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.754949 B = 3392.275311 C = 3694.122556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.155 3.845 3 H 0.082 0.918 4 C -0.127 4.127 5 C -0.091 4.091 6 C -0.097 4.097 7 H 0.058 0.942 8 C 0.072 3.928 9 N -0.849 5.849 10 C 0.120 3.880 11 N -1.006 6.006 12 S 2.718 3.282 13 O -1.030 7.030 14 O -1.050 7.050 15 C -1.030 5.030 16 H 0.114 0.886 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.984 3.016 20 H -0.248 1.248 21 H -0.258 1.258 22 H -0.261 1.261 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.343 0.657 33 H 0.351 0.649 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 0.778 11.759 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.050 3.950 3 H 0.100 0.900 4 C -0.166 4.166 5 C -0.129 4.129 6 C -0.118 4.118 7 H 0.076 0.924 8 C -0.060 4.060 9 N -0.379 5.379 10 C -0.006 4.006 11 N -0.845 5.845 12 S 2.821 3.179 13 O -1.020 7.020 14 O -1.040 7.040 15 C -1.163 5.163 16 H 0.132 0.868 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.803 3.197 20 H -0.171 1.171 21 H -0.183 1.183 22 H -0.185 1.185 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.273 1.887 11.199 14.662 hybrid contribution -0.381 -1.859 -0.790 2.055 sum 8.892 0.028 10.408 13.690 Atomic orbital electron populations 1.22727 0.94814 1.03922 1.04110 1.21040 0.93530 0.95927 0.84493 0.89986 1.22015 0.96976 1.00769 0.96852 1.21350 0.94058 1.00083 0.97383 1.21493 0.95754 0.99341 0.95190 0.92356 1.21678 0.93443 0.99121 0.91723 1.58683 1.11607 1.22860 1.44799 1.21456 0.79742 1.00828 0.98553 1.57805 1.17128 1.73244 1.36292 1.00043 0.71505 0.75157 0.71214 1.93320 1.57105 1.64576 1.86999 1.93261 1.72080 1.86819 1.51880 1.30951 1.38215 1.31222 1.15951 0.86822 1.25951 0.93202 1.02341 0.92570 1.69999 1.30287 1.41217 1.11241 0.85185 0.78626 0.75944 0.79966 1.17079 1.18272 1.18488 0.93028 0.88717 0.90746 0.88659 0.92812 0.91235 0.89915 0.95525 0.89814 0.84500 0.83571 0.91424 0.90184 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.58 7.70 71.98 0.55 -7.02 16 2 C 0.16 5.31 3.48 44.97 0.16 5.47 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.13 -3.46 5.35 30.67 0.16 -3.29 16 5 C -0.09 -2.19 5.07 30.62 0.16 -2.04 16 6 C -0.10 -2.67 2.48 -10.72 -0.03 -2.70 16 7 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 8 C 0.07 1.54 6.18 86.30 0.53 2.07 16 9 N -0.85 -15.18 9.06 -186.71 -1.69 -16.87 16 10 C 0.12 4.15 5.71 86.36 0.49 4.64 16 11 N -1.01 -41.50 3.29 -490.79 -1.61 -43.11 16 12 S 2.72 149.16 4.39 -56.49 -0.25 148.91 16 13 O -1.03 -60.89 13.93 -128.00 -1.78 -62.67 16 14 O -1.05 -64.28 16.49 -128.00 -2.11 -66.39 16 15 C -1.03 -57.25 8.24 67.73 0.56 -56.69 16 16 H 0.11 5.81 7.81 -2.91 -0.02 5.78 16 17 C 0.07 4.03 5.46 84.65 0.46 4.49 16 18 N -0.90 -54.10 13.19 21.44 0.28 -53.82 16 19 Si 0.98 41.78 29.54 68.60 2.03 43.80 16 20 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 H 0.05 2.28 5.69 -2.39 -0.01 2.26 16 24 H 0.09 2.79 8.10 -2.38 -0.02 2.77 16 25 H 0.07 3.27 6.08 -2.39 -0.01 3.25 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.84 7.72 -2.39 -0.02 1.82 16 30 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.34 6.01 8.99 -89.70 -0.81 5.21 16 33 H 0.35 4.78 9.08 -89.69 -0.81 3.97 16 34 H 0.07 2.63 6.89 -2.38 -0.02 2.61 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -74.29 294.68 -2.62 -76.91 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.53 Total: 28.30 kcal Atomic # 6 Polarization: -58.12 SS G_CDS: 3.05 Total: -55.07 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -3.02 Total: -113.80 kcal Atomic # 8 Polarization: -125.17 SS G_CDS: -3.89 Total: -129.06 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 149.16 SS G_CDS: -0.25 Total: 148.91 kcal Total: -74.29 -2.62 -76.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.914 kcal (2) G-P(sol) polarization free energy of solvation -74.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds