Wall clock time and date at job start Mon Mar 30 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.70129 * 2 1 4 4 C 1.53195 * 109.58528 * 239.64966 * 2 1 3 5 5 C 1.53039 * 109.31223 * 185.57621 * 4 2 1 6 6 C 1.53040 * 109.53013 * 61.36971 * 5 4 2 7 7 H 1.09000 * 109.49364 * 58.57944 * 6 5 4 8 8 C 1.52998 * 109.49943 * 178.67477 * 6 5 4 9 9 N 1.46905 * 109.47438 * 295.00337 * 8 6 5 10 10 C 1.53189 * 109.31136 * 298.61493 * 6 5 4 11 11 N 1.46923 * 109.59148 * 120.36088 * 2 1 3 12 12 S 1.65599 * 120.62969 * 353.41451 * 11 2 1 13 13 O 1.42099 * 106.40437 * 36.38624 * 12 11 2 14 14 O 1.42104 * 106.40391 * 169.30410 * 12 11 2 15 15 C 1.76199 * 107.21746 * 282.84558 * 12 11 2 16 16 H 1.08003 * 120.00490 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99998 * 179.97438 * 15 12 11 18 18 N 1.31523 * 119.99935 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00196 * 180.02562 * 17 15 12 20 20 H 1.48490 * 109.47474 * 90.00038 * 19 17 15 21 21 H 1.48507 * 109.47156 * 210.00041 * 19 17 15 22 22 H 1.48500 * 109.47076 * 329.99634 * 19 17 15 23 23 H 1.09008 * 109.46992 * 171.87356 * 1 2 3 24 24 H 1.08999 * 109.47027 * 291.85994 * 1 2 3 25 25 H 1.08994 * 109.47699 * 51.86788 * 1 2 3 26 26 H 1.09000 * 109.50103 * 65.62474 * 4 2 1 27 27 H 1.09004 * 109.49691 * 305.52786 * 4 2 1 28 28 H 1.09006 * 109.45896 * 181.38759 * 5 4 2 29 29 H 1.09004 * 109.45891 * 301.35205 * 5 4 2 30 30 H 1.09004 * 109.47050 * 54.99868 * 8 6 5 31 31 H 1.08998 * 109.46984 * 174.99855 * 8 6 5 32 32 H 1.00898 * 110.99934 * 56.04324 * 9 8 6 33 33 H 1.00894 * 110.99865 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.60114 * 294.86468 * 10 6 5 35 35 H 1.09001 * 109.70007 * 174.50104 * 10 6 5 36 36 H 0.96995 * 119.99718 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 6 3.9567 -1.6658 0.0632 7 1 3.4979 -2.6528 0.0048 8 6 5.4786 -1.8119 0.1197 9 7 5.9378 -2.6017 -1.0307 10 6 3.4651 -0.9469 1.3235 11 7 2.0226 -0.6996 1.1943 12 16 0.9719 -1.2003 2.3724 13 8 -0.2100 -1.6196 1.7041 14 8 1.7152 -2.0449 3.2404 15 6 0.5319 0.2206 3.3169 16 1 0.9463 1.1858 3.0656 17 6 -0.3414 0.1002 4.3771 18 7 -0.8456 -1.0752 4.6836 19 14 -0.8085 1.6066 5.3781 20 1 -2.0102 2.2437 4.7824 21 1 -1.1050 1.2001 6.7753 22 1 0.3186 2.5735 5.3726 23 1 -0.3633 -1.0174 -0.1453 24 1 -0.3633 0.3826 0.9538 25 1 -0.3634 0.6345 -0.8083 26 1 1.7659 -0.1667 -2.1369 27 1 1.6029 -1.7252 -1.2915 28 1 3.9377 -1.3446 -2.0671 29 1 4.0060 0.1475 -1.0993 30 1 5.9397 -0.8247 0.0899 31 1 5.7610 -2.3171 1.0433 32 1 5.6323 -2.1877 -1.8986 33 1 6.9405 -2.7128 -1.0159 34 1 3.9904 0.0020 1.4315 35 1 3.6522 -1.5697 2.1983 36 1 -1.4603 -1.1597 5.4292 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:29 Heat of formation + Delta-G solvation = -96.328009 kcal Electronic energy + Delta-G solvation = -19348.110210 eV Core-core repulsion = 16379.181911 eV Total energy + Delta-G solvation = -2968.928300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.70073 -35.73586 -34.85996 -33.91436 -33.06469 -31.54245 -31.33492 -27.28217 -26.10469 -23.74371 -23.33391 -21.09079 -19.70672 -18.63382 -16.98110 -16.15470 -15.88691 -15.53403 -15.06625 -14.56485 -14.18067 -13.89116 -13.71312 -13.42410 -13.19969 -12.97509 -12.24702 -11.98029 -11.83016 -11.52411 -11.34865 -11.21191 -11.16532 -10.80579 -10.61276 -10.60544 -10.42426 -10.17552 -10.06076 -9.98798 -9.26701 -9.15164 -8.83956 -8.72948 -8.09919 -6.67403 -5.28753 2.31887 3.07183 3.14131 3.20656 4.06824 4.46948 4.60567 4.66245 4.96357 5.01052 5.12123 5.41015 5.51911 5.60119 5.72989 5.77428 5.81888 5.85770 6.02778 6.05125 6.13273 6.20827 6.30294 6.36173 6.40413 6.52440 6.64025 6.82385 6.91648 7.10043 7.29204 7.35957 7.36837 7.70894 8.00306 8.91146 10.25822 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031702 B = 0.006932 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.009222 B = 4038.026324 C = 4304.206336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.161 3.839 3 H 0.060 0.940 4 C -0.127 4.127 5 C -0.110 4.110 6 C -0.102 4.102 7 H 0.082 0.918 8 C 0.067 3.933 9 N -0.851 5.851 10 C 0.127 3.873 11 N -1.008 6.008 12 S 2.717 3.283 13 O -0.999 6.999 14 O -1.009 7.009 15 C -1.020 5.020 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.918 3.082 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.263 1.263 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.338 0.662 33 H 0.338 0.662 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 3.307 -9.974 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.054 3.946 3 H 0.078 0.922 4 C -0.166 4.166 5 C -0.148 4.148 6 C -0.122 4.122 7 H 0.101 0.899 8 C -0.065 4.065 9 N -0.381 5.381 10 C 0.000 4.000 11 N -0.843 5.843 12 S 2.819 3.181 13 O -0.990 6.990 14 O -0.999 6.999 15 C -1.153 5.153 16 H 0.119 0.881 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.742 3.258 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.032 1.698 -9.426 12.500 hybrid contribution 0.366 2.354 0.418 2.419 sum 8.398 4.052 -9.007 12.965 Atomic orbital electron populations 1.22715 0.92966 1.05188 1.03426 1.20748 0.94712 0.94626 0.84502 0.92199 1.21957 0.95329 1.01614 0.97738 1.21523 0.96432 0.99478 0.97347 1.21561 0.94344 1.00483 0.95860 0.89936 1.21787 0.95086 0.95206 0.94388 1.58716 1.17552 1.56315 1.05541 1.21207 0.81447 0.99511 0.97854 1.58201 1.16923 1.74545 1.34658 1.00443 0.71344 0.75078 0.71207 1.93389 1.47329 1.83423 1.74818 1.93321 1.73074 1.68251 1.65254 1.30638 1.39870 1.15581 1.29214 0.88095 1.24739 0.91535 0.97408 0.94769 1.69902 1.26489 1.23707 1.27423 0.86200 0.79493 0.81429 0.78661 1.19192 1.20001 1.18734 0.88615 0.89942 0.92956 0.91594 0.91334 0.92293 0.92420 0.95489 0.90627 0.84836 0.85029 0.92646 0.88642 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 7.60 37.16 0.28 -3.27 16 2 C 0.16 2.83 3.51 -67.60 -0.24 2.59 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -1.84 5.36 -26.61 -0.14 -1.98 16 5 C -0.11 -1.40 4.97 -26.69 -0.13 -1.53 16 6 C -0.10 -1.49 2.55 -90.50 -0.23 -1.72 16 7 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 8 C 0.07 0.79 6.25 -3.82 -0.02 0.77 16 9 N -0.85 -8.92 9.62 -10.37 -0.10 -9.02 16 10 C 0.13 2.23 5.80 -3.71 -0.02 2.21 16 11 N -1.01 -20.73 3.29 -106.48 -0.35 -21.08 16 12 S 2.72 72.22 4.43 -107.50 -0.48 71.74 16 13 O -1.00 -28.21 13.55 -57.17 -0.77 -28.98 16 14 O -1.01 -29.66 16.37 -57.17 -0.94 -30.59 16 15 C -1.02 -28.03 8.67 30.60 0.27 -27.77 16 16 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16 17 C 0.13 3.72 5.46 -17.81 -0.10 3.62 16 18 N -0.85 -24.88 13.19 55.43 0.73 -24.15 16 19 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 23 H 0.10 2.01 6.39 -51.92 -0.33 1.68 16 24 H 0.08 1.82 5.68 -51.93 -0.29 1.53 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 28 H 0.06 0.64 6.62 -51.93 -0.34 0.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.34 3.15 7.22 -39.29 -0.28 2.86 16 33 H 0.34 2.82 9.08 -39.29 -0.36 2.46 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.83 6.69 -51.93 -0.35 1.48 16 36 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -33.46 292.55 -8.16 -41.63 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.31 Total: 7.55 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -0.34 Total: -27.09 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.25 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -1.71 Total: -59.57 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 72.22 SS G_CDS: -0.48 Total: 71.74 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.46 -8.16 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.701 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds