Wall clock time and date at job start Mon Mar 30 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.70129 * 2 1 4 4 C 1.53195 * 109.58528 * 239.64966 * 2 1 3 5 5 C 1.53039 * 109.31223 * 185.57621 * 4 2 1 6 6 C 1.53040 * 109.53013 * 61.36971 * 5 4 2 7 7 H 1.09000 * 109.49364 * 58.57944 * 6 5 4 8 8 C 1.52998 * 109.49943 * 178.67477 * 6 5 4 9 9 N 1.46905 * 109.47438 * 295.00337 * 8 6 5 10 10 C 1.53189 * 109.31136 * 298.61493 * 6 5 4 11 11 N 1.46923 * 109.59148 * 120.36088 * 2 1 3 12 12 S 1.65599 * 120.62969 * 353.41451 * 11 2 1 13 13 O 1.42099 * 106.40437 * 36.38624 * 12 11 2 14 14 O 1.42104 * 106.40391 * 169.30410 * 12 11 2 15 15 C 1.76199 * 107.21746 * 282.84558 * 12 11 2 16 16 H 1.08003 * 120.00490 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99998 * 179.97438 * 15 12 11 18 18 N 1.31523 * 119.99935 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00196 * 180.02562 * 17 15 12 20 20 H 1.48490 * 109.47474 * 90.00038 * 19 17 15 21 21 H 1.48507 * 109.47156 * 210.00041 * 19 17 15 22 22 H 1.48500 * 109.47076 * 329.99634 * 19 17 15 23 23 H 1.09008 * 109.46992 * 171.87356 * 1 2 3 24 24 H 1.08999 * 109.47027 * 291.85994 * 1 2 3 25 25 H 1.08994 * 109.47699 * 51.86788 * 1 2 3 26 26 H 1.09000 * 109.50103 * 65.62474 * 4 2 1 27 27 H 1.09004 * 109.49691 * 305.52786 * 4 2 1 28 28 H 1.09006 * 109.45896 * 181.38759 * 5 4 2 29 29 H 1.09004 * 109.45891 * 301.35205 * 5 4 2 30 30 H 1.09004 * 109.47050 * 54.99868 * 8 6 5 31 31 H 1.08998 * 109.46984 * 174.99855 * 8 6 5 32 32 H 1.00898 * 110.99934 * 56.04324 * 9 8 6 33 33 H 1.00894 * 110.99865 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.60114 * 294.86468 * 10 6 5 35 35 H 1.09001 * 109.70007 * 174.50104 * 10 6 5 36 36 H 0.96995 * 119.99718 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 6 3.9567 -1.6658 0.0632 7 1 3.4979 -2.6528 0.0048 8 6 5.4786 -1.8119 0.1197 9 7 5.9378 -2.6017 -1.0307 10 6 3.4651 -0.9469 1.3235 11 7 2.0226 -0.6996 1.1943 12 16 0.9719 -1.2003 2.3724 13 8 -0.2100 -1.6196 1.7041 14 8 1.7152 -2.0449 3.2404 15 6 0.5319 0.2206 3.3169 16 1 0.9463 1.1858 3.0656 17 6 -0.3414 0.1002 4.3771 18 7 -0.8456 -1.0752 4.6836 19 14 -0.8085 1.6066 5.3781 20 1 -2.0102 2.2437 4.7824 21 1 -1.1050 1.2001 6.7753 22 1 0.3186 2.5735 5.3726 23 1 -0.3633 -1.0174 -0.1453 24 1 -0.3633 0.3826 0.9538 25 1 -0.3634 0.6345 -0.8083 26 1 1.7659 -0.1667 -2.1369 27 1 1.6029 -1.7252 -1.2915 28 1 3.9377 -1.3446 -2.0671 29 1 4.0060 0.1475 -1.0993 30 1 5.9397 -0.8247 0.0899 31 1 5.7610 -2.3171 1.0433 32 1 5.6323 -2.1877 -1.8986 33 1 6.9405 -2.7128 -1.0159 34 1 3.9904 0.0020 1.4315 35 1 3.6522 -1.5697 2.1983 36 1 -1.4603 -1.1597 5.4292 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:29 Heat of formation + Delta-G solvation = -123.933499 kcal Electronic energy + Delta-G solvation = -19349.307274 eV Core-core repulsion = 16379.181911 eV Total energy + Delta-G solvation = -2970.125364 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98266 -37.68790 -36.24021 -36.02357 -35.16815 -32.94814 -32.47949 -28.61344 -28.21201 -25.07410 -24.49834 -22.46757 -20.89300 -20.68012 -18.89282 -17.91580 -17.15469 -17.04984 -16.64982 -16.09366 -15.88956 -15.35399 -15.04354 -14.75713 -14.60643 -14.24790 -13.94813 -13.53621 -13.41669 -13.27082 -13.03700 -12.83180 -12.69252 -12.45425 -12.33119 -12.22389 -11.98747 -11.78416 -11.55775 -11.26312 -11.23795 -10.94787 -10.86677 -9.70159 -9.50654 -8.73214 -7.46201 0.35743 1.32411 1.32911 1.48834 2.20042 2.58074 2.83051 3.62245 3.78190 3.80962 3.87672 4.01525 4.21590 4.27862 4.41028 4.45246 4.54352 4.54993 4.72556 4.80216 4.83940 4.88319 5.02829 5.07377 5.12036 5.23310 5.27135 5.33933 5.43693 5.55608 5.70434 5.92037 6.09869 6.31170 6.70050 6.78637 8.21300 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031702 B = 0.006932 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.009222 B = 4038.026324 C = 4304.206336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.152 3.848 3 H 0.088 0.912 4 C -0.124 4.124 5 C -0.104 4.104 6 C -0.098 4.098 7 H 0.052 0.948 8 C 0.073 3.927 9 N -0.859 5.859 10 C 0.118 3.882 11 N -1.006 6.006 12 S 2.717 3.283 13 O -1.029 7.029 14 O -1.051 7.051 15 C -1.036 5.036 16 H 0.116 0.884 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.988 3.012 20 H -0.253 1.253 21 H -0.264 1.264 22 H -0.249 1.249 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.348 0.652 33 H 0.352 0.648 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 5.827 -11.578 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.047 3.953 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.141 4.141 6 C -0.119 4.119 7 H 0.071 0.929 8 C -0.058 4.058 9 N -0.391 5.391 10 C -0.008 4.008 11 N -0.845 5.845 12 S 2.820 3.180 13 O -1.020 7.020 14 O -1.041 7.041 15 C -1.169 5.169 16 H 0.134 0.866 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.806 3.194 20 H -0.177 1.177 21 H -0.188 1.188 22 H -0.172 1.172 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.504 4.202 -11.051 15.169 hybrid contribution -0.056 1.536 0.833 1.749 sum 9.448 5.738 -10.217 15.053 Atomic orbital electron populations 1.22630 0.94637 1.04109 1.02990 1.21108 0.93545 0.96196 0.84433 0.89396 1.21959 0.96586 1.00569 0.97222 1.21522 0.95015 1.00505 0.97055 1.21489 0.96100 0.98926 0.95374 0.92906 1.21638 0.93012 0.96502 0.94678 1.58626 1.18804 1.56280 1.05435 1.21472 0.79816 1.00873 0.98653 1.57761 1.17525 1.74869 1.34360 1.00070 0.71292 0.75071 0.71563 1.93361 1.49218 1.84152 1.75221 1.93256 1.73851 1.69774 1.67217 1.30962 1.40035 1.16302 1.29649 0.86620 1.26009 0.91201 1.00979 0.96080 1.70003 1.27703 1.26383 1.28631 0.85159 0.79964 0.77047 0.77188 1.17684 1.18801 1.17193 0.91374 0.93404 0.88922 0.88068 0.93425 0.89733 0.90197 0.93276 0.91714 0.83779 0.83448 0.89824 0.91386 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.08 7.60 71.98 0.55 -6.53 16 2 C 0.15 5.10 3.51 44.97 0.16 5.25 16 3 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 4 C -0.12 -3.26 5.36 30.67 0.16 -3.09 16 5 C -0.10 -2.24 4.97 30.62 0.15 -2.09 16 6 C -0.10 -2.72 2.55 -10.72 -0.03 -2.75 16 7 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 8 C 0.07 1.58 6.25 86.30 0.54 2.12 16 9 N -0.86 -15.71 9.62 -186.71 -1.80 -17.51 16 10 C 0.12 4.08 5.80 86.36 0.50 4.58 16 11 N -1.01 -41.52 3.29 -490.78 -1.61 -43.14 16 12 S 2.72 150.27 4.43 -56.49 -0.25 150.02 16 13 O -1.03 -61.20 13.55 -128.00 -1.74 -62.94 16 14 O -1.05 -65.13 16.37 -128.00 -2.09 -67.23 16 15 C -1.04 -57.98 8.67 67.74 0.59 -57.39 16 16 H 0.12 5.88 7.81 -2.91 -0.02 5.85 16 17 C 0.07 3.94 5.46 84.65 0.46 4.40 16 18 N -0.90 -54.47 13.19 21.45 0.28 -54.19 16 19 Si 0.99 41.82 29.54 68.60 2.03 43.85 16 20 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 23 H 0.07 2.96 6.39 -2.38 -0.02 2.94 16 24 H 0.05 2.15 5.68 -2.39 -0.01 2.13 16 25 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.44 8.13 -2.39 -0.02 1.43 16 28 H 0.08 1.46 6.62 -2.38 -0.02 1.44 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.35 5.22 7.22 -89.70 -0.65 4.58 16 33 H 0.35 4.89 9.08 -89.70 -0.81 4.08 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.71 6.69 -2.39 -0.02 2.70 16 36 H 0.30 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -76.80 292.55 -2.47 -79.27 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.37 Total: 27.36 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 3.08 Total: -55.50 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -3.13 Total: -114.83 kcal Atomic # 8 Polarization: -126.34 SS G_CDS: -3.83 Total: -130.17 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 150.27 SS G_CDS: -0.25 Total: 150.02 kcal Total: -76.80 -2.47 -79.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.663 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds